Rmu_sc0000010.1_g000007

Classical arabinogalactan protein 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000010.1
OG0003772
Physical Location & Seq
Reverse (-)
22562 .. 27159
4598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000010.1_g000007.1.cds

Sequence Viewer

Length: 423 bp
atgaagaggtcgaagcctgaaaatttctccatagatggagtcgctccaatccccccgcccccccccccccccgccactcctcccccggcaactccaccacccgccacccctcccccggcaaccccacctccggcaactcctcccccggccactccaccaccagctcctcttgcatcgcccccagctcttgtcccagctccatctcccaaggtgaaatctccggctctggctccaactcctgcagctctttcgccgggcccaccatcgcctcctgttggagctcctggtcccagcagcatcgaggcagcctctccgggcccgtctcagtcgtctgatcagagtggagtagagaagatgtggacaatgcagaagatggttgggagcttgttgttcggatgggctcttctcagcttgatgctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

13.83

Weight (kDa)

9.3

Isoelectric Point (pI)

106.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 56, 72, 102
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 22
AfiI CCNNNNNNNGG 3 cut(s) 115, 130, 275
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 7 cut(s) 164, 185, 197, 245, 281, 384, 411
AluI AGCT 7 cut(s) 164, 185, 197, 245, 281, 384, 411
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 327
AoxI GGCC 3 cut(s) 147, 256, 316
ApaI GGGCCC 2 cut(s) 260, 320
ApeKI GCWGC 3 cut(s) 242, 294, 305
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 5 cut(s) 256, 257, 287, 316, 317
AsuC2I CCSGG 5 cut(s) 86, 116, 146, 255, 315
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 287
BaeGI GKGCMC 2 cut(s) 260, 320
BanII GRGCYC 4 cut(s) 260, 283, 320, 403
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 3 cut(s) 254, 306, 317
BccI CCATC 5 cut(s) 29, 208, 271, 367, 390
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BciT130I CCWGG 1 cut(s) 285
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 5 cut(s) 86, 116, 146, 255, 315
BcoDI GTCTC 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 3 cut(s) 243, 295, 306
BlsI GCNGC 3 cut(s) 244, 296, 307
Bme1390I CCNGG 6 cut(s) 86, 116, 146, 255, 285, 315
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 5 cut(s) 256, 257, 287, 316, 317
BmiI GGNNCC 4 cut(s) 231, 258, 289, 318
BmrFI CCNGG 6 cut(s) 86, 116, 146, 255, 285, 315
BmsI GCATC 3 cut(s) 182, 306, 405
BplI GAGNNNNNCTC 2 cut(s) 293, 325
BpuMI CCSGG 5 cut(s) 86, 116, 146, 255, 315
BsaJI CCNNGG 4 cut(s) 84, 114, 144, 207
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 130, 275
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 4 cut(s) 84, 114, 144, 207
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 3 cut(s) 115, 130, 275
BseMII CTCAG 2 cut(s) 338, 421
BseRI GAGGAG 3 cut(s) 69, 129, 156
BseSI GKGCMC 2 cut(s) 260, 320
BseXI GCAGC 3 cut(s) 254, 306, 317
BseYI CCCAGC 3 cut(s) 181, 193, 290
BshFI GGCC 3 cut(s) 149, 258, 318
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 7 cut(s) 86, 116, 131, 146, 221, 254, 314
BslFI GGGAC 2 cut(s) 176, 273
BslI CCNNNNNNNGG 3 cut(s) 115, 130, 275
BsmAI GTCTC 1 cut(s) 327
BsmBI CGTCTC 1 cut(s) 327
BsmFI GGGAC 2 cut(s) 176, 273
BsnI GGCC 3 cut(s) 149, 258, 318
Bsp120I GGGCCC 2 cut(s) 256, 316
Bsp1286I GDGCHC 4 cut(s) 260, 283, 320, 403
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 3 cut(s) 56, 72, 102
BspANI GGCC 3 cut(s) 149, 258, 318
BspCNI CTCAG 2 cut(s) 337, 420
BspLI GGNNCC 4 cut(s) 231, 258, 289, 318
BspMAI CTGCAG 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 408
BssECI CCNNGG 4 cut(s) 84, 114, 144, 207
BssMI GATC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 324, 407
BstF5I GGATG 1 cut(s) 401
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 6 cut(s) 84, 114, 144, 253, 283, 313
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 2 cut(s) 260, 320
BstV1I GCAGC 3 cut(s) 254, 306, 317
BsuRI GGCC 3 cut(s) 149, 258, 318
BtgZI GCGATG 2 cut(s) 159, 249
BtsCI GGATG 1 cut(s) 401
Cfr13I GGNCC 5 cut(s) 256, 257, 287, 316, 317
DdeI CTNAG 2 cut(s) 324, 407
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Ecl136II GAGCTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 4 cut(s) 260, 283, 320, 403
Eco47I GGWCC 1 cut(s) 287
Eco53kI GAGCTC 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 4 cut(s) 260, 283, 320, 403
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 327
FaiI YATR 1 cut(s) 32
FaqI GGGAC 2 cut(s) 176, 273
FauI CCCGC 3 cut(s) 63, 79, 109
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 243, 295, 306
FokI GGATG 1 cut(s) 408
FriOI GRGCYC 4 cut(s) 260, 283, 320, 403
Fsp4HI GCNGC 3 cut(s) 243, 295, 306
GluI GCNGC 3 cut(s) 243, 295, 306
GsaI CCCAGC 3 cut(s) 185, 197, 294
HaeIII GGCC 3 cut(s) 149, 258, 318
HapII CCGG 7 cut(s) 86, 116, 131, 146, 221, 254, 314
HinfI GANTC 1 cut(s) 39
HpaII CCGG 7 cut(s) 86, 116, 131, 146, 221, 254, 314
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 3 cut(s) 334, 339, 395
Hpy8I GTNNAC 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 173, 242, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 324, 407
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 1 cut(s) 334
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 7 cut(s) 49, 169, 202, 235, 278, 286, 381
Lsp1109I GCAGC 3 cut(s) 254, 306, 317
LweI GCATC 3 cut(s) 182, 306, 405
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 4 cut(s) 16, 364, 382, 395
MhlI GDGCHC 4 cut(s) 260, 283, 320, 403
MluCI AATT 1 cut(s) 22
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 2 cut(s) 256, 257
MnlI CCTC 8 cut(s) 90, 120, 138, 150, 177, 279, 295, 319
MspI CCGG 7 cut(s) 86, 116, 131, 146, 221, 254, 314
MspR9I CCNGG 6 cut(s) 86, 116, 146, 255, 285, 315
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 5 cut(s) 86, 116, 146, 255, 315
NdeII GATC 1 cut(s) 334
NlaIV GGNNCC 4 cut(s) 231, 258, 289, 318
PciSI GCTCTTC 1 cut(s) 408
PkrI GCNGC 3 cut(s) 244, 296, 307
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 283
PspFI CCCAGC 3 cut(s) 181, 193, 290
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 4 cut(s) 231, 258, 289, 318
PspOMI GGGCCC 2 cut(s) 256, 316
PspPI GGNCC 5 cut(s) 256, 257, 287, 316, 317
PstI CTGCAG 1 cut(s) 244
SacI GAGCTC 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 408
SatI GCNGC 3 cut(s) 243, 295, 306
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 5 cut(s) 256, 257, 287, 316, 317
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 6 cut(s) 86, 116, 146, 255, 285, 315
SduI GDGCHC 4 cut(s) 260, 283, 320, 403
SfaNI GCATC 3 cut(s) 182, 306, 405
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 1 cut(s) 287
Sse9I AATT 1 cut(s) 22
SsiI CCGC 3 cut(s) 56, 72, 102
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 6 cut(s) 84, 114, 144, 253, 283, 313
StyI CCWWGG 1 cut(s) 207
TaqI TCGA 2 cut(s) 11, 300
TasI AATT 1 cut(s) 22
TseI GCWGC 3 cut(s) 242, 294, 305
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.