Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

18843358 .. 18845959

Gene Structure 2602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG203900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATCGCAGCACCGCCTTAACGTTCGCCTTCATCTGCATTATCGTCGCCGGCGTCGGAGGTCAAGCTCCGGCTTCTGCACCCACTAAATCTACCGCCACTCCGGCTTCCGCACCCACTAAATCTCCCGCCACTCCCGCCCCCACCACATCACCATCCGCCGCTCCTTCAAAGCCCAAGTCCCCAGCTCCCGTCGCCACACCGGCCTCAGCTCCGACCGCCGCTCCACCTACCCCCGTCGCCGCCGCTCCAACTCCGGTAGCCACTCCTCCCGCGAAATCTCCGCCGACTGCTGCACCTACACCGGCCGTAACTCCGGTCAGCTCACCCCCCGCCACTCCTCCCGCCAAATCTCCACCGACCGCTGCTCCCACACCAACCGCCGTCCCCGTAGCACCGGTTTCTCCTCCCTCCATCGCACCTGCTGCTCCGGCTCCAAAATCCGAGACTCCTTCAGCTGCTCCCGGTCCAGCAACTGTCAGTCCACCCGCACCGCCACCTGAGACCCCCGGAGGGAGCCCTGAAGCCGGTCCTTCCGGCGGTCCTTCCGGCGCCGCAGCTGATGAGAGTGGAGCAGAGAAGGTGCATTACATGGTTGGATCGATTGCATTGGGATGGGGTGTGATCATGGCATTGTGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

20.09

Weight (kDa)

8.85

Isoelectric Point (pI)

87.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	551
AccBSI	CCGCTC	3 cut(s)	164, 224, 248
AccII	CGCG	1 cut(s)	275
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	2 cut(s)	12, 607
AcoI	YGGCCR	1 cut(s)	306
AcuI	CTGAAG	2 cut(s)	438, 543
AcyI	GRCGYC	2 cut(s)	54, 552
AfiI	CCNNNNNNNGG	3 cut(s)	513, 527, 539
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	171
AluBI	AGCT	6 cut(s)	68, 188, 212, 324, 458, 560
AluI	AGCT	6 cut(s)	68, 188, 212, 324, 458, 560
Alw26I	GTCTC	2 cut(s)	440, 497
AlwI	GGATC	2 cut(s)	12, 607
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	2 cut(s)	204, 306
ApeKI	GCWGC	6 cut(s)	9, 293, 365, 425, 458, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AsiGI	ACCGGT	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	3 cut(s)	467, 530, 542
AsuC2I	CCSGG	2 cut(s)	465, 510
AsuHPI	GGTGA	2 cut(s)	144, 318
AvaII	GGWCC	3 cut(s)	467, 530, 542
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	521
BarI	GAAGNNNNNNTAC	2 cut(s)	572, 604
BbvCI	CCTCAGC	1 cut(s)	208
BbvI	GCAGC	6 cut(s)	21, 280, 352, 412, 445, 569
BccI	CCATC	3 cut(s)	163, 422, 609
BceAI	ACGGC	2 cut(s)	293, 368
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BclI	TGATCA	1 cut(s)	624
BcnI	CCSGG	2 cut(s)	465, 510
BcoDI	GTCTC	2 cut(s)	440, 497
BfaI	CTAG	1 cut(s)	643
BfoI	RGCGCY	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	430
BglI	GCCNNNNNGGC	2 cut(s)	104, 203
Bme1390I	CCNGG	2 cut(s)	465, 510
Bme18I	GGWCC	3 cut(s)	467, 530, 542
BmgT120I	GGNCC	3 cut(s)	467, 530, 542
BmiI	GGNNCC	3 cut(s)	435, 518, 553
BmrFI	CCNGG	2 cut(s)	465, 510
Bpu10I	CCTNAGC	1 cut(s)	208
BpuMI	CCSGG	2 cut(s)	465, 510
Bsa29I	ATCGAT	1 cut(s)	602
BsaHI	GRCGYC	2 cut(s)	54, 552
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	3 cut(s)	256, 316, 397
BsaXI	ACNNNNNCTCC	8 cut(s)	85, 109, 115, 139, 208, 238, 352, 382
Bsc4I	CCNNNNNNNGG	3 cut(s)	513, 527, 539
Bse118I	RCCGGY	5 cut(s)	50, 202, 304, 397, 527
BseCI	ATCGAT	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	2 cut(s)	155, 620
BseLI	CCNNNNNNNGG	3 cut(s)	513, 527, 539
BseMII	CTCAG	2 cut(s)	222, 492
BseRI	GAGGAG	3 cut(s)	258, 330, 396
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	6 cut(s)	21, 280, 352, 412, 445, 569
BseYI	CCCAGC	1 cut(s)	184
BsgI	GTGCAG	2 cut(s)	63, 279
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	3 cut(s)	219, 309, 363
BshFI	GGCC	2 cut(s)	206, 308
BshNI	GGYRCC	1 cut(s)	551
BshTI	ACCGGT	1 cut(s)	397
BshVI	ATCGAT	1 cut(s)	602
BsiEI	CGRYCG	3 cut(s)	219, 309, 363
BslFI	GGGAC	2 cut(s)	166, 371
BslI	CCNNNNNNNGG	3 cut(s)	513, 527, 539
BsmAI	GTCTC	2 cut(s)	440, 497
BsmFI	GGGAC	2 cut(s)	166, 371
BsnI	GGCC	2 cut(s)	206, 308
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	4, 599, 624
BspANI	GGCC	2 cut(s)	206, 308
BspCNI	CTCAG	2 cut(s)	221, 493
BspDI	ATCGAT	1 cut(s)	602
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	3 cut(s)	435, 518, 553
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	12, 607
BspT107I	GGYRCC	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	3 cut(s)	164, 224, 248
BsrFI	RCCGGY	5 cut(s)	50, 202, 304, 397, 527
BssAI	RCCGGY	5 cut(s)	50, 202, 304, 397, 527
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	3 cut(s)	4, 599, 624
BssNI	GRCGYC	2 cut(s)	54, 552
Bst4CI	ACNGT	1 cut(s)	478
BstACI	GRCGYC	2 cut(s)	54, 552
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	208, 501
BstF5I	GGATG	2 cut(s)	155, 620
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	3 cut(s)	7, 602, 627
BstMAI	GTCTC	2 cut(s)	440, 497
BstMBI	GATC	3 cut(s)	4, 599, 624
BstMCI	CGRYCG	3 cut(s)	219, 309, 363
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 137, 194, 203, 218, 425, 431
BstSCI	CCNGG	2 cut(s)	463, 508
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	6 cut(s)	21, 280, 352, 412, 445, 569
BstZI	CGGCCG	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	602
BsuRI	GGCC	2 cut(s)	206, 308
BsuTUI	ATCGAT	1 cut(s)	602
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	155, 620
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	476
CfoI	GCGC	1 cut(s)	554
Cfr10I	RCCGGY	5 cut(s)	50, 202, 304, 397, 527
Cfr13I	GGNCC	3 cut(s)	467, 530, 542
ClaI	ATCGAT	1 cut(s)	602
CseI	GACGC	1 cut(s)	43
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	2 cut(s)	592, 628
DdeI	CTNAG	2 cut(s)	208, 501
DinI	GGCGCC	1 cut(s)	553
DpnI	GATC	3 cut(s)	6, 601, 626
DpnII	GATC	3 cut(s)	4, 599, 624
EaeI	YGGCCR	1 cut(s)	306
EagI	CGGCCG	1 cut(s)	306
EciI	GGCGGA	2 cut(s)	148, 273
EclXI	CGGCCG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	521
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	3 cut(s)	467, 530, 542
Eco52I	CGGCCG	1 cut(s)	306
Eco57I	CTGAAG	2 cut(s)	438, 543
EcoT38I	GRGCYC	1 cut(s)	521
EgeI	GGCGCC	1 cut(s)	553
EheI	GGCGCC	1 cut(s)	553
FaeI	CATG	2 cut(s)	595, 631
FaiI	YATR	2 cut(s)	593, 629
FaqI	GGGAC	2 cut(s)	166, 371
FatI	CATG	2 cut(s)	591, 627
FauI	CCCGC	6 cut(s)	136, 145, 280, 340, 352, 496
FbaI	TGATCA	1 cut(s)	624
FokI	GGATG	2 cut(s)	142, 627
FriOI	GRGCYC	1 cut(s)	521
FspBI	CTAG	1 cut(s)	643
GlaI	GCGC	1 cut(s)	553
GsaI	CCCAGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	206, 308
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	554
Hin1I	GRCGYC	2 cut(s)	54, 552
Hin1II	CATG	2 cut(s)	595, 631
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HinfI	GANTC	1 cut(s)	448
HphI	GGTGA	2 cut(s)	144, 318
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	3 cut(s)	59, 216, 445
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	4 cut(s)	50, 59, 197, 242
HpyAV	CCTTC	6 cut(s)	40, 177, 462, 543, 555, 574
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	39, 80, 296, 586, 608
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 137, 194, 203, 218, 425, 431
HpyF3I	CTNAG	2 cut(s)	208, 501
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	2 cut(s)	54, 552
Hsp92II	CATG	2 cut(s)	595, 631
HspAI	GCGC	1 cut(s)	552
KasI	GGCGCC	1 cut(s)	551
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	3 cut(s)	4, 599, 624
Lsp1109I	GCAGC	6 cut(s)	21, 280, 352, 412, 445, 569
MaeI	CTAG	1 cut(s)	643
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	3 cut(s)	6, 601, 626
MbiI	CCGCTC	3 cut(s)	164, 224, 248
MboI	GATC	3 cut(s)	4, 599, 624
MhlI	GDGCHC	1 cut(s)	521
Mly113I	GGCGCC	1 cut(s)	552
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	4 cut(s)	37, 239, 275, 577
MnlI	CCTC	7 cut(s)	53, 217, 279, 351, 417, 421, 506
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	613
MspA1I	CMGCKG	3 cut(s)	365, 458, 560
MspR9I	CCNGG	2 cut(s)	465, 510
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	7 cut(s)	104, 137, 194, 203, 218, 425, 431
NaeI	GCCGGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	552
NciI	CCSGG	2 cut(s)	465, 510
NdeII	GATC	3 cut(s)	4, 599, 624
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	595, 631
NlaIV	GGNNCC	3 cut(s)	435, 518, 553
PaqCI	CACCTGC	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	397
PleI	GAGTC	1 cut(s)	442
PluTI	GGCGCC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	442
Psp1406I	AACGTT	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	184
PspN4I	GGNNCC	3 cut(s)	435, 518, 553
PspPI	GGNCC	3 cut(s)	467, 530, 542
PstNI	CAGNNNCTG	1 cut(s)	476
PvuII	CAGCTG	2 cut(s)	458, 560
RseI	CAYNNNNRTG	1 cut(s)	613
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	4, 599, 624
Sau96I	GGNCC	3 cut(s)	467, 530, 542
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	2 cut(s)	465, 510
SduI	GDGCHC	1 cut(s)	521
SfoI	GGCGCC	1 cut(s)	553
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	3 cut(s)	467, 530, 542
SmiMI	CAYNNNNRTG	1 cut(s)	613
SspDI	GGCGCC	1 cut(s)	551
SspMI	CTAG	1 cut(s)	643
StyD4I	CCNGG	2 cut(s)	463, 508
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	602
TauI	GCSGC	5 cut(s)	164, 224, 245, 248, 557
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseI	GCWGC	6 cut(s)	9, 293, 365, 425, 458, 557
TspDTI	ATGAA	1 cut(s)	22
VpaK11BI	GGWCC	3 cut(s)	467, 530, 542
XspI	CTAG	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.