Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

12496837 .. 12498444

Gene Structure 1608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCATTTGGTACCACCACGCTCGAACGAGCTTCCCGTTGCTCACGCTTCTAACGAGAAGGGCCTATTTAACCAGTCCCAGTTGCTCTCTCTCTCTCCCACTCTAAACCCAAAACTCCATAAGTCGACCGAGTCGACTTACTCATTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTAATCACACAGAGAGATCAGACATGGATCGCAAGACTTTGTTCTTCCTAGGCTTTGTCTGCATTGTCTTCGCCGGTGTCGGGGGCCAATCTCCCCCCACTACCACTCCTGCTCCCCCCGCCACATCCACAACTCCACCATCCAACAACCAGCCACCACCCTCTCCCCCCGCGAGCACTCCACCTCCCGCATCCACCCCTCCTCCCACGTCAGCTCCTCCTCCCGTTACCACATCACCGCCCCCAGCTACCACGTCTCCGCCTCCATCAACTCCTCCCCCTGTCTCAGCTCCCCCGCCGGCCACCCCACCTCCAGTCAACGCTCCTCCACCCGCAACTCCACCTCCAGCGACTCCTCCACCCGCTACTCCTCCACCAGCAAGTCCGCCACCGGCCACACCCCCACCGGCCACACCACCACCAGCCACTCCGCCACCCGCCACTCCACCACCAGCAACACCACCACCGGCCCCTCTTGCGTCTCCTCCAGCTCAGGTACCAGCTCCAGCTCCCACCGTGAAATCTCCAGCTTTGGCGCCTTCTCCCCTCGCACTGGCCCCCGGCCCACCCGCACCGCCAGTCGGAGCTCCAGCGCCGTCCCTCGATTCCGGCGCTCCGGGACCGTCATCTTCAGTTGATCAGAGCGGAGCAGAGAAGATGTGGTCGATGCAGAAGATGGTAGGGAGCTTCCTGTTTGGGTGGGCTGTCCTCAGCTTGATGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

30.01

Weight (kDa)

7.94

Isoelectric Point (pI)

96.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	10, 676
AccB1I	GGYRCC	3 cut(s)	10, 676, 715
AccBSI	CCGCTC	1 cut(s)	825
AccI	GTMKAC	2 cut(s)	125, 134
AccII	CGCG	1 cut(s)	353
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	3 cut(s)	480, 573, 588
AcuI	CTGAAG	1 cut(s)	795
AcyI	GRCGYC	1 cut(s)	716
AfaI	GTAC	2 cut(s)	12, 678
AfiI	CCNNNNNNNGG	3 cut(s)	261, 733, 761
AjiI	CACGTC	2 cut(s)	390, 435
Alw21I	GWGCWC	2 cut(s)	359, 769
Alw26I	GTCTC	3 cut(s)	441, 469, 666
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	8 cut(s)	61, 265, 480, 573, 588, 648, 735, 742
Asp718I	GGTACC	2 cut(s)	10, 676
AspA2I	CCTAGG	1 cut(s)	229
AspLEI	GCGC	3 cut(s)	718, 775, 794
AspS9I	GGNCC	6 cut(s)	61, 265, 649, 736, 743, 800
AsuC2I	CCSGG	2 cut(s)	741, 798
AsuHPI	GGTGA	1 cut(s)	408
AvaII	GGWCC	1 cut(s)	800
AvrII	CCTAGG	1 cut(s)	229
BanI	GGYRCC	3 cut(s)	10, 676, 715
BanII	GRGCYC	1 cut(s)	769
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	2 cut(s)	359, 769
BbvCI	CCTCAGC	1 cut(s)	890
BccI	CCATC	3 cut(s)	328, 454, 850
BceAI	ACGGC	1 cut(s)	760
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BclI	TGATCA	1 cut(s)	817
BcnI	CCSGG	2 cut(s)	741, 798
BcoDI	GTCTC	3 cut(s)	441, 469, 666
BfaI	CTAG	1 cut(s)	230
BfoI	RGCGCY	3 cut(s)	719, 776, 795
BlnI	CCTAGG	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	741, 798
Bme18I	GGWCC	1 cut(s)	800
BmgBI	CACGTC	2 cut(s)	390, 435
BmgT120I	GGNCC	6 cut(s)	61, 265, 649, 736, 743, 800
BmiI	GGNNCC	7 cut(s)	12, 266, 651, 678, 717, 738, 801
BmrFI	CCNGG	2 cut(s)	741, 798
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	3 cut(s)	380, 837, 888
BmuI	ACTGGG	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	6 cut(s)	477, 510, 651, 669, 690, 753
Bpu10I	CCTNAGC	2 cut(s)	672, 890
BpuMI	CCSGG	2 cut(s)	741, 798
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	229, 739
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 733, 761
Bse118I	RCCGGY	5 cut(s)	254, 478, 571, 586, 646
Bse1I	ACTGG	5 cut(s)	73, 79, 494, 738, 758
BseDI	CCNNGG	2 cut(s)	229, 739
BseGI	GGATG	3 cut(s)	305, 320, 371
BseLI	CCNNNNNNNGG	3 cut(s)	261, 733, 761
BseMII	CTCAG	3 cut(s)	480, 686, 904
BseNI	ACTGG	5 cut(s)	73, 79, 494, 738, 758
BseRI	GAGGAG	8 cut(s)	372, 387, 390, 444, 495, 525, 540, 654
BseYI	CCCAGC	1 cut(s)	424
Bsh1236I	CGCG	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	8 cut(s)	63, 267, 482, 575, 590, 650, 737, 744
BshNI	GGYRCC	3 cut(s)	10, 676, 715
BsiEI	CGRYCG	1 cut(s)	129
BsiHKAI	GWGCWC	2 cut(s)	359, 769
BsiSI	CCGG	8 cut(s)	255, 479, 572, 587, 647, 741, 789, 797
BslFI	GGGAC	3 cut(s)	61, 763, 813
BslI	CCNNNNNNNGG	3 cut(s)	261, 733, 761
BsmAI	GTCTC	3 cut(s)	441, 469, 666
BsmBI	CGTCTC	2 cut(s)	441, 666
BsmFI	GGGAC	3 cut(s)	61, 763, 813
BsnI	GGCC	8 cut(s)	63, 267, 482, 575, 590, 650, 737, 744
Bsp1286I	GDGCHC	2 cut(s)	359, 769
Bsp143I	GATC	3 cut(s)	197, 208, 817
BspANI	GGCC	8 cut(s)	63, 267, 482, 575, 590, 650, 737, 744
BspCNI	CTCAG	3 cut(s)	479, 685, 903
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	7 cut(s)	12, 266, 651, 678, 717, 738, 801
BspPI	GGATC	1 cut(s)	216
BspT107I	GGYRCC	3 cut(s)	10, 676, 715
BsrBI	CCGCTC	1 cut(s)	825
BsrFI	RCCGGY	5 cut(s)	254, 478, 571, 586, 646
BsrI	ACTGG	5 cut(s)	73, 79, 494, 738, 758
BssAI	RCCGGY	5 cut(s)	254, 478, 571, 586, 646
BssECI	CCNNGG	2 cut(s)	229, 739
BssMI	GATC	3 cut(s)	197, 208, 817
BssNI	GRCGYC	1 cut(s)	716
BssT1I	CCWWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	697, 804
BstACI	GRCGYC	1 cut(s)	716
BstC8I	GCNNGC	2 cut(s)	355, 480
BstDEI	CTNAG	3 cut(s)	466, 672, 890
BstF5I	GGATG	3 cut(s)	305, 320, 371
BstFNI	CGCG	1 cut(s)	353
BstH2I	RGCGCY	3 cut(s)	719, 776, 795
BstHHI	GCGC	3 cut(s)	718, 775, 794
BstKTI	GATC	3 cut(s)	200, 211, 820
BstMAI	GTCTC	3 cut(s)	441, 469, 666
BstMBI	GATC	3 cut(s)	197, 208, 817
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 299, 656
BstSCI	CCNGG	2 cut(s)	739, 796
BstUI	CGCG	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	241
BsuRI	GGCC	8 cut(s)	63, 267, 482, 575, 590, 650, 737, 744
BtrI	CACGTC	2 cut(s)	390, 435
BtsCI	GGATG	3 cut(s)	305, 320, 371
BtsIMutI	CAGTG	1 cut(s)	731
Cac8I	GCNNGC	2 cut(s)	355, 480
CfoI	GCGC	3 cut(s)	718, 775, 794
Cfr10I	RCCGGY	5 cut(s)	254, 478, 571, 586, 646
Cfr13I	GGNCC	6 cut(s)	61, 265, 649, 736, 743, 800
CseI	GACGC	1 cut(s)	648
Csp6I	GTAC	2 cut(s)	11, 677
CviAII	CATG	1 cut(s)	205
CviQI	GTAC	2 cut(s)	11, 677
DdeI	CTNAG	3 cut(s)	466, 672, 890
DinI	GGCGCC	1 cut(s)	717
DpnI	GATC	3 cut(s)	199, 210, 819
DpnII	GATC	3 cut(s)	197, 208, 817
EaeI	YGGCCR	3 cut(s)	480, 573, 588
EciI	GGCGGA	3 cut(s)	429, 555, 600
Ecl136II	GAGCTC	1 cut(s)	767
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	769
Eco47I	GGWCC	1 cut(s)	800
Eco53kI	GAGCTC	1 cut(s)	767
Eco57I	CTGAAG	1 cut(s)	795
EcoICRI	GAGCTC	1 cut(s)	767
EcoO109I	RGGNCCY	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	769
EgeI	GGCGCC	1 cut(s)	717
EheI	GGCGCC	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	229
Esp3I	CGTCTC	2 cut(s)	441, 666
FaeI	CATG	1 cut(s)	208
FaiI	YATR	2 cut(s)	120, 206
FaqI	GGGAC	3 cut(s)	61, 763, 813
FatI	CATG	1 cut(s)	204
FauI	CCCGC	8 cut(s)	307, 358, 376, 483, 520, 550, 625, 757
FbaI	TGATCA	1 cut(s)	817
FblI	GTMKAC	2 cut(s)	125, 134
FokI	GGATG	3 cut(s)	292, 307, 358
FriOI	GRGCYC	1 cut(s)	769
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	3 cut(s)	717, 774, 793
GsaI	CCCAGC	1 cut(s)	428
GsuI	CTGGAG	6 cut(s)	477, 510, 651, 669, 690, 753
HaeII	RGCGCY	3 cut(s)	719, 776, 795
HaeIII	GGCC	8 cut(s)	63, 267, 482, 575, 590, 650, 737, 744
HapII	CCGG	8 cut(s)	255, 479, 572, 587, 647, 741, 789, 797
HgaI	GACGC	1 cut(s)	648
HhaI	GCGC	3 cut(s)	718, 775, 794
Hin1I	GRCGYC	1 cut(s)	716
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	3 cut(s)	716, 773, 792
HinP1I	GCGC	3 cut(s)	716, 773, 792
HincII	GTYRAC	3 cut(s)	126, 135, 499
HindII	GTYRAC	3 cut(s)	126, 135, 499
HinfI	GANTC	3 cut(s)	131, 532, 785
HpaII	CCGG	8 cut(s)	255, 479, 572, 587, 647, 741, 789, 797
HphI	GGTGA	1 cut(s)	408
Hpy166II	GTNNAC	3 cut(s)	126, 135, 499
Hpy188I	TCNGA	3 cut(s)	202, 764, 822
Hpy8I	GTNNAC	3 cut(s)	126, 135, 499
HpyAV	CCTTC	2 cut(s)	52, 729
HpyCH4III	ACNGT	2 cut(s)	697, 804
HpyCH4IV	ACGT	2 cut(s)	389, 434
HpyCH4V	TGCA	3 cut(s)	4, 243, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 299, 656
HpyF3I	CTNAG	3 cut(s)	466, 672, 890
HpySE526I	ACGT	2 cut(s)	389, 434
Hsp92I	GRCGYC	1 cut(s)	716
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	3 cut(s)	716, 773, 792
KasI	GGCGCC	1 cut(s)	715
KpnI	GGTACC	2 cut(s)	14, 680
KroI	GCCGGC	1 cut(s)	478
KroNI	GCCGGC	1 cut(s)	480
Ksp22I	TGATCA	1 cut(s)	817
Kzo9I	GATC	3 cut(s)	197, 208, 817
LweI	GCATC	3 cut(s)	380, 837, 888
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	389, 434
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	3 cut(s)	199, 210, 819
MbiI	CCGCTC	1 cut(s)	825
MboI	GATC	3 cut(s)	197, 208, 817
MboII	GAAGA	5 cut(s)	217, 241, 801, 847, 865
MhlI	GDGCHC	2 cut(s)	359, 769
Mly113I	GGCGCC	1 cut(s)	716
MlyI	GAGTC	2 cut(s)	140, 526
MmeI	TCCRAC	2 cut(s)	348, 742
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	478
MseI	TTAA	2 cut(s)	69, 183
MspI	CCGG	8 cut(s)	255, 479, 572, 587, 647, 741, 789, 797
MspR9I	CCNGG	2 cut(s)	741, 798
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	3 cut(s)	240, 299, 656
NaeI	GCCGGC	1 cut(s)	480
NarI	GGCGCC	1 cut(s)	716
NciI	CCSGG	2 cut(s)	741, 798
NdeII	GATC	3 cut(s)	197, 208, 817
NgoMIV	GCCGGC	1 cut(s)	478
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	7 cut(s)	12, 266, 651, 678, 717, 738, 801
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	3 cut(s)	33, 51, 131
PdiI	GCCGGC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	785
PflFI	GACNNNGTC	1 cut(s)	130
PfoI	TCCNGGA	1 cut(s)	796
PleI	GAGTC	2 cut(s)	139, 526
PluTI	GGCGCC	1 cut(s)	719
PpsI	GAGTC	2 cut(s)	139, 526
Psp124BI	GAGCTC	1 cut(s)	769
PspFI	CCCAGC	1 cut(s)	424
PspN4I	GGNNCC	7 cut(s)	12, 266, 651, 678, 717, 738, 801
PspPI	GGNCC	6 cut(s)	61, 265, 649, 736, 743, 800
PsyI	GACNNNGTC	1 cut(s)	130
RsaI	GTAC	2 cut(s)	12, 678
RsaNI	GTAC	2 cut(s)	11, 677
SacI	GAGCTC	1 cut(s)	769
SalI	GTCGAC	2 cut(s)	124, 133
SaqAI	TTAA	2 cut(s)	69, 183
Sau3AI	GATC	3 cut(s)	197, 208, 817
Sau96I	GGNCC	6 cut(s)	61, 265, 649, 736, 743, 800
SchI	GAGTC	2 cut(s)	140, 526
ScrFI	CCNGG	2 cut(s)	741, 798
SduI	GDGCHC	2 cut(s)	359, 769
SfaNI	GCATC	3 cut(s)	380, 837, 888
SfoI	GGCGCC	1 cut(s)	717
SgrAI	CRCCGGYG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	800
SspDI	GGCGCC	1 cut(s)	715
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	769
StyD4I	CCNGG	2 cut(s)	739, 796
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	697, 804
TaiI	ACGT	2 cut(s)	392, 437
TaqI	TCGA	5 cut(s)	23, 125, 134, 783, 845
TaqII	GACCGA	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	785
Tru1I	TTAA	2 cut(s)	69, 183
Tru9I	TTAA	2 cut(s)	69, 183
TscAI	CASTG	1 cut(s)	738
TspDTI	ATGAA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	738
Tth111I	GACNNNGTC	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	800
XmaJI	CCTAGG	1 cut(s)	229
XmiI	GTMKAC	2 cut(s)	125, 134
XspI	CTAG	1 cut(s)	230
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.