RchiOBHm_Chr6g0254241

Classical arabinogalactan protein 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003772
Physical Location & Seq
Forward (+)
9282927 .. 9284882
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22804

Sequence Viewer

Length: 609 bp
ATGCTTCTTCGCATTCCTCTTATAACGAGAACCCTATTTAAACCATTCCCATTACTTCTCTCTCCCTCAAACTCACTCACTCTCTCTCTCTTTTTCTCTCTGTTAATCCCACACAGAGAGATCAGAGACAACATGAGTCGCAATGCCTTGTTCTTCCTAGGCTTCCTTTGCATTGCGGTCGCCGGAGTCGGAGGCCAATCTCCCTCTACCTCACCCACCGCCACACCAGCTCCTCCAACCCCCACTACTCCACCACCGGTCACCTCATCCCCACCCCCAGCTGCCACCTCACCTCCCCCAGCTGCCGCCTCACCACCACCAGTGACCGCATCACCACCACCAGCCACTCCTCCTCCAGTCAGCGCACCCCCGCCGGCCACTCCACCTCCGGCCACCCCACCACCAGTCAGCGCTCCCCCTCCGGCCACTCCACCACCCGCAACTCCTCCCCCGGCAACTCCACCACCCTCCACTCCTCCCCGGCAACTCCACCACCCGCCACCCCTCCCCCGGCAACCCCACCTCCTGCAACTCCTCCCCCGGCCACTCCACCACCAGCTCCTCTTGCATCGCCCCCAGCTCTTGTCCCAGCTCCATCTCCCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

21.12

Weight (kDa)

12.0

Isoelectric Point (pI)

90.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AciI CCGC 7 cut(s) 176, 219, 306, 327, 371, 438, 497
AcoI YGGCCR 4 cut(s) 375, 390, 423, 542
AfeI AGCGCT 1 cut(s) 412
AfiI CCNNNNNNNGG 1 cut(s) 510
AgeI ACCGGT 1 cut(s) 256
AluBI AGCT 6 cut(s) 230, 281, 302, 559, 580, 592
AluI AGCT 6 cut(s) 230, 281, 302, 559, 580, 592
Alw26I GTCTC 1 cut(s) 120
Aor51HI AGCGCT 1 cut(s) 412
AoxI GGCC 5 cut(s) 193, 375, 390, 423, 542
ApeKI GCWGC 2 cut(s) 281, 302
AsiGI ACCGGT 1 cut(s) 256
AspA2I CCTAGG 1 cut(s) 157
AspLEI GCGC 2 cut(s) 365, 413
AsuC2I CCSGG 4 cut(s) 452, 481, 511, 541
AsuHPI GGTGA 5 cut(s) 204, 253, 282, 303, 324
AvrII CCTAGG 1 cut(s) 157
BbvI GCAGC 2 cut(s) 268, 289
BccI CCATC 1 cut(s) 603
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BcnI CCSGG 4 cut(s) 452, 481, 511, 541
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 158
BfoI RGCGCY 1 cut(s) 414
BisI GCNGC 3 cut(s) 282, 303, 306
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 3 cut(s) 283, 304, 307
Bme1390I CCNGG 4 cut(s) 452, 481, 511, 541
BmrFI CCNGG 4 cut(s) 452, 481, 511, 541
BmsI GCATC 2 cut(s) 338, 577
BpmI CTGGAG 1 cut(s) 339
BpuMI CCSGG 4 cut(s) 452, 481, 511, 541
BsaJI CCNNGG 6 cut(s) 157, 450, 479, 509, 539, 602
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 510
Bse118I RCCGGY 2 cut(s) 256, 373
Bse1I ACTGG 3 cut(s) 320, 356, 404
Bse3DI GCAATG 2 cut(s) 148, 171
BseDI CCNNGG 6 cut(s) 157, 450, 479, 509, 539, 602
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 510
BseMI GCAATG 2 cut(s) 148, 171
BseNI ACTGG 3 cut(s) 320, 356, 404
BseRI GAGGAG 7 cut(s) 222, 339, 342, 435, 465, 524, 551
BseXI GCAGC 2 cut(s) 268, 289
BseYI CCCAGC 4 cut(s) 277, 298, 576, 588
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 5 cut(s) 195, 377, 392, 425, 544
BshTI ACCGGT 1 cut(s) 256
BsiEI CGRYCG 1 cut(s) 180
BsiSI CCGG 9 cut(s) 183, 257, 374, 389, 422, 452, 481, 511, 541
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 1 cut(s) 510
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 571
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 5 cut(s) 195, 377, 392, 425, 544
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 7 cut(s) 176, 219, 306, 327, 371, 438, 497
BspANI GGCC 5 cut(s) 195, 377, 392, 425, 544
BsrDI GCAATG 2 cut(s) 148, 171
BsrFI RCCGGY 2 cut(s) 256, 373
BsrI ACTGG 3 cut(s) 320, 356, 404
BssAI RCCGGY 2 cut(s) 256, 373
BssECI CCNNGG 6 cut(s) 157, 450, 479, 509, 539, 602
BssMI GATC 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 157, 602
BstC8I GCNNGC 1 cut(s) 375
BstEII GGTNACC 1 cut(s) 259
BstF5I GGATG 1 cut(s) 266
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 2 cut(s) 365, 413
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 120
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 3 cut(s) 168, 227, 565
BstPI GGTNACC 1 cut(s) 259
BstSCI CCNGG 4 cut(s) 450, 479, 509, 539
BstV1I GCAGC 2 cut(s) 268, 289
BsuRI GGCC 5 cut(s) 195, 377, 392, 425, 544
BtgZI GCGATG 1 cut(s) 554
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 375
CfoI GCGC 2 cut(s) 365, 413
Cfr10I RCCGGY 2 cut(s) 256, 373
CspAI ACCGGT 1 cut(s) 256
CviAII CATG 1 cut(s) 133
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DraI TTTAAA 1 cut(s) 40
EaeI YGGCCR 4 cut(s) 375, 390, 423, 542
Eco130I CCWWGG 2 cut(s) 157, 602
Eco47III AGCGCT 1 cut(s) 412
Eco91I GGTNACC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 157, 602
ErhI CCWWGG 2 cut(s) 157, 602
FaeI CATG 1 cut(s) 136
FaiI YATR 2 cut(s) 23, 134
FaqI GGGAC 1 cut(s) 571
FatI CATG 1 cut(s) 132
FauI CCCGC 3 cut(s) 378, 445, 504
Fnu4HI GCNGC 3 cut(s) 282, 303, 306
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 3 cut(s) 282, 303, 306
FspBI CTAG 1 cut(s) 158
GlaI GCGC 2 cut(s) 364, 412
GluI GCNGC 3 cut(s) 282, 303, 306
GsaI CCCAGC 4 cut(s) 281, 302, 580, 592
GsuI CTGGAG 1 cut(s) 339
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 5 cut(s) 195, 377, 392, 425, 544
HapII CCGG 9 cut(s) 183, 257, 374, 389, 422, 452, 481, 511, 541
HhaI GCGC 2 cut(s) 365, 413
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 2 cut(s) 363, 411
HinP1I GCGC 2 cut(s) 363, 411
HinfI GANTC 2 cut(s) 136, 186
HpaII CCGG 9 cut(s) 183, 257, 374, 389, 422, 452, 481, 511, 541
HphI GGTGA 5 cut(s) 204, 253, 282, 303, 324
Hpy188I TCNGA 2 cut(s) 125, 191
HpyCH4V TGCA 3 cut(s) 171, 529, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 227, 565
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 2 cut(s) 363, 411
KroI GCCGGC 1 cut(s) 373
KroNI GCCGGC 1 cut(s) 375
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 4 cut(s) 235, 418, 564, 597
Lsp1109I GCAGC 2 cut(s) 268, 289
LweI GCATC 2 cut(s) 338, 577
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 259, 322
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 145
MlyI GAGTC 2 cut(s) 145, 195
MmeI TCCRAC 2 cut(s) 169, 260
MroNI GCCGGC 1 cut(s) 373
MseI TTAA 2 cut(s) 39, 104
MspA1I CMGCKG 2 cut(s) 281, 302
MspI CCGG 9 cut(s) 183, 257, 374, 389, 422, 452, 481, 511, 541
MspR9I CCNGG 4 cut(s) 452, 481, 511, 541
Mva1269I GAATGC 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 168, 227, 565
NaeI GCCGGC 1 cut(s) 375
NciI CCSGG 4 cut(s) 452, 481, 511, 541
NdeII GATC 1 cut(s) 120
NgoMIV GCCGGC 1 cut(s) 373
NlaIII CATG 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 259, 322
PctI GAATGC 1 cut(s) 12
PdiI GCCGGC 1 cut(s) 375
PinAI ACCGGT 1 cut(s) 256
PkrI GCNGC 3 cut(s) 283, 304, 307
PleI GAGTC 2 cut(s) 144, 194
PpsI GAGTC 2 cut(s) 144, 194
PsiI TTATAA 1 cut(s) 23
PspEI GGTNACC 1 cut(s) 259
PspFI CCCAGC 4 cut(s) 277, 298, 576, 588
PvuII CAGCTG 2 cut(s) 281, 302
SaqAI TTAA 2 cut(s) 39, 104
SatI GCNGC 3 cut(s) 282, 303, 306
Sau3AI GATC 1 cut(s) 120
SchI GAGTC 2 cut(s) 145, 195
ScrFI CCNGG 4 cut(s) 452, 481, 511, 541
SfaNI GCATC 2 cut(s) 338, 577
SsiI CCGC 7 cut(s) 176, 219, 306, 327, 371, 438, 497
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 4 cut(s) 450, 479, 509, 539
StyI CCWWGG 2 cut(s) 157, 602
TauI GCSGC 1 cut(s) 308
Tru1I TTAA 2 cut(s) 39, 104
Tru9I TTAA 2 cut(s) 39, 104
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 2 cut(s) 259, 322
TseI GCWGC 2 cut(s) 281, 302
Tsp45I GTSAC 2 cut(s) 259, 322
TspRI CASTG 1 cut(s) 327
XmaJI CCTAGG 1 cut(s) 157
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.