Rorug05G0551400

Classical arabinogalactan protein 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003772
Physical Location & Seq
Forward (+)
73954140 .. 73957354
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0551400.1

Sequence Viewer

Length: 1764 bp
ATGGATAACAACAATGGGAGTCCTCCTCAAGGTGGAGAGCCTGCAATGGATGCAGGAGATTGGAGGTGCCAATTGCAGGCGGATTCGCGGCAAAGAATTGTCAATAAGATAATGGATACATTGAAGAGGCATATTCCTTACTCCAGTGAAGATGAACTCAAGAAAATTGCTGTTAGGTTTGAGGAAAAGATTTATGTTGCTGCCCCAAGTCTGTCAGATTATCTATCGAAAATTTCTCTAAAGATGCTCTCTATGGAGACCAAGTCTCAGAACACAATGCCCAATTCTTTACAATCCAACTCTGCTGGGTCTTCTGGTATGCAACCTCAAGTCATCAGTCAAGGACAACTCTTATCAGAGAACATTCAAAGTAGCATTCCACCTGCTGGAGTTCAAAATTCTGCTGGCTTATCATCTGCACTACCTCCTACCTCCGGGCCACAAGAGCAAATATTGCCCCCACAGCATCAACCGCAACAATTAATAGCACCTTTGGATTCCACAGTCCAGACTGGGAATACAAATGGAGCTGATTGGCAAGAGGAGGGCTATCAAAAGATCAAAGTCATGAAGGAGATGTACTACCCCGAACTAAGTGAAATGTACCAAAAAATTGCTACTAAACTTCATCAGCACGACTCCCTTCCACAACAGCCAAAGTCAGATCAGCTTGAGAAGCTGAAGATGTTTAAGACCATGCTGGAGCGCCTGATAACAGTCTTACAAATTTCCAAAACTAACATATCACCTGGTTTGAAGGAGAAGTTGGGTTTATACGAGAAGCAGATGATAAATTTTATTAATACAAATAGACCCAGGAAGCCTGTTTCTTCTCTGCCGCCAGGGCAGCTCCCCCCACCGCATATGCAGTCCATGCAGCAGTCACAATCCCAGATTACTCAAGTGCAATCTCATGAAAATCAGATGAACCCACAATTGCAATCCCTGAACTTGCAAGGTTCTGTGCCAACAATGCAGCAGAACAATATGACGGGCATGCAGCAAAATTCTATGTCTTCTTTATCCGGGGTTTCAACAGCACAGCAAAACATGATGAATCCGTTGCAGCCAAGTTCCAATATGGATCCAGGACAAGGAACCGCACTGAACTCACTGCAGCAGGTCCCTGTGGGCTCTATCGAACAGACCCCTGTCAGTGCTCCCCAACAAGCTAACATGAATGCCTTATCATCACAGAATGGGATTAACATGCTGCAGAGCAACATTAATCCCCTTCAGTCAAATTCTGGTATGCTTCATAGCCAACATCTGAAACAGCAGGAACAGCAGTTGTATCAGAATCAACTCAAGCAACAATATCAACAACGACAGATGCAGCAGCAGCAGATATTTCAACAGCAACAGCAAGAGCTACAGCAGCTGCTGCCTGGACAGTTGGAACCCCAGCTTCACCAAATCAGTGTTGTTAATGACATGAACATGAATCACTTGTCATCATCACAGAGTGGGAGTAATATGCTGCAGGAAAGCACTGATTCCCTCAAGTCAAACTCTGGTATGCTTGATAACCAGCGTCAGAAGCAAGAAACTTCCTCTGTGAACCTCAAGCAACTGTATCAACAGCTACAGATGCAGCAGCAATGGATGCAGAAACTGCAGATGCTTCAAGAAAAGCAACAGCAGCAGATACAGCAACTACAGCAGCAAGCAAAGCAGCGGCTGCATTTTATTTATTTCATCCATCTCATCTTTCTCATTATTCTATACGTTGCTGCTGTTTTCGGGAAAGGCTATTGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

587

Amino Acids

66.27

Weight (kDa)

8.32

Isoelectric Point (pI)

67.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 19 - 94 1.5e-27 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 391
Acc36I ACCTGC 2 cut(s) 391, 1111
AccB1I GGYRCC 1 cut(s) 66
AccB7I CCANNNNNTGG 1 cut(s) 386
AccII CGCG 1 cut(s) 88
AciI CCGC 7 cut(s) 80, 88, 473, 839, 860, 1101, 1678
AclWI GGATC 2 cut(s) 1079, 1092
AcsI RAATTY 6 cut(s) 231, 397, 726, 793, 1006, 1243
AcuI CTGAAG 2 cut(s) 701, 1220
AdeI CACNNNGTG 1 cut(s) 1466
AfaI GTAC 2 cut(s) 581, 605
AfiI CCNNNNNNNGG 6 cut(s) 29, 32, 76, 386, 434, 1094
AgsI TTSAA 7 cut(s) 124, 368, 395, 757, 1035, 1355, 1628
AjnI CCWGG 5 cut(s) 748, 815, 841, 1087, 1387
AjuI GAANNNNNNNTTGG 2 cut(s) 749, 781
AluBI AGCT 9 cut(s) 530, 670, 679, 850, 1172, 1372, 1381, 1408, 1585
AluI AGCT 9 cut(s) 530, 670, 679, 850, 1172, 1372, 1381, 1408, 1585
Alw21I GWGCWC 1 cut(s) 1162
Alw26I GTCTC 2 cut(s) 251, 270
AlwI GGATC 2 cut(s) 1079, 1092
AlwNI CAGNNNCTG 4 cut(s) 1381, 1384, 1615, 1681
AoxI GGCC 1 cut(s) 437
ApoI RAATTY 6 cut(s) 231, 397, 726, 793, 1006, 1243
AseI ATTAAT 3 cut(s) 482, 801, 1227
AspLEI GCGC 1 cut(s) 708
AspS9I GGNCC 2 cut(s) 437, 1123
AsuC2I CCSGG 2 cut(s) 436, 1027
AsuHPI GGTGA 2 cut(s) 738, 1403
AvaII GGWCC 1 cut(s) 1123
BamHI GGATCC 1 cut(s) 1084
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 1 cut(s) 1136
BarI GAAGNNNNNNTAC 2 cut(s) 563, 595
BbsI GAAGAC 2 cut(s) 303, 1008
Bbv12I GWGCWC 1 cut(s) 1162
BccI CCATC 1 cut(s) 1710
BciT130I CCWGG 5 cut(s) 750, 817, 843, 1089, 1389
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 2 cut(s) 436, 1027
BcoDI GTCTC 2 cut(s) 251, 270
BfmI CTRYAG 7 cut(s) 1115, 1214, 1373, 1481, 1586, 1616, 1658
BfoI RGCGCY 1 cut(s) 709
BfuAI ACCTGC 2 cut(s) 391, 1111
BfuI GTATCC 1 cut(s) 109
BglI GCCNNNNNGGC 1 cut(s) 844
Bme1390I CCNGG 7 cut(s) 436, 750, 817, 843, 1027, 1089, 1389
Bme18I GGWCC 1 cut(s) 1123
BmgT120I GGNCC 2 cut(s) 437, 1123
BmiI GGNNCC 5 cut(s) 68, 1086, 1099, 1125, 1401
BmrFI CCNGG 7 cut(s) 436, 750, 817, 843, 1027, 1089, 1389
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 7 cut(s) 40, 234, 475, 1323, 1581, 1596, 1611
BmuI ACTGGG 1 cut(s) 522
BoxI GACNNNNGTC 1 cut(s) 1151
BpiI GAAGAC 2 cut(s) 303, 1008
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 3 cut(s) 127, 408, 722
BpuEI CTTGAG 8 cut(s) 12, 143, 312, 692, 885, 1292, 1487, 1550
BpuMI CCSGG 2 cut(s) 436, 1027
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 815, 842, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 6 cut(s) 29, 32, 76, 386, 434, 1094
Bse1I ACTGG 2 cut(s) 144, 517
Bse3DI GCAATG 2 cut(s) 51, 1607
BseBI CCWGG 5 cut(s) 750, 817, 843, 1089, 1389
BseDI CCNNGG 3 cut(s) 815, 842, 1026
BseGI GGATG 3 cut(s) 55, 1611, 1698
BseLI CCNNNNNNNGG 6 cut(s) 29, 32, 76, 386, 434, 1094
BseMI GCAATG 2 cut(s) 51, 1607
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 2 cut(s) 144, 517
BseRI GAGGAG 2 cut(s) 15, 557
BseYI CCCAGC 2 cut(s) 305, 1404
BsgI GTGCAG 1 cut(s) 402
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 439
BshNI GGYRCC 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 1162
BsiSI CCGG 2 cut(s) 435, 1026
BslFI GGGAC 1 cut(s) 1109
BslI CCNNNNNNNGG 6 cut(s) 29, 32, 76, 386, 434, 1094
BsmAI GTCTC 2 cut(s) 251, 270
BsmFI GGGAC 1 cut(s) 1109
BsmI GAATGC 2 cut(s) 375, 1186
BsnI GGCC 1 cut(s) 439
Bso31I GGTCTC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 1136, 1162
Bsp143I GATC 3 cut(s) 558, 664, 1084
BspACI CCGC 7 cut(s) 80, 88, 473, 839, 860, 1101, 1678
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 1 cut(s) 88
BspHI TCATGA 2 cut(s) 567, 913
BspLI GGNNCC 5 cut(s) 68, 1086, 1099, 1125, 1401
BspMAI CTGCAG 4 cut(s) 1119, 1218, 1485, 1620
BspMI ACCTGC 2 cut(s) 391, 1111
BspPI GGATC 2 cut(s) 1079, 1092
BspT107I GGYRCC 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 51, 1607
BsrI ACTGG 2 cut(s) 144, 517
BssECI CCNNGG 3 cut(s) 815, 842, 1026
BssMI GATC 3 cut(s) 558, 664, 1084
Bst2UI CCWGG 5 cut(s) 750, 817, 843, 1089, 1389
Bst4CI ACNGT 4 cut(s) 505, 718, 1395, 1575
Bst6I CTCTTC 1 cut(s) 119
BstAPI GCANNNNNTGC 7 cut(s) 50, 454, 874, 1384, 1606, 1615, 1681
BstC8I GCNNGC 5 cut(s) 42, 78, 406, 998, 1668
BstDEI CTNAG 2 cut(s) 267, 593
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 55, 1611, 1698
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 709
BstHHI GCGC 1 cut(s) 708
BstKTI GATC 3 cut(s) 561, 667, 1087
BstMAI GTCTC 2 cut(s) 251, 270
BstMBI GATC 3 cut(s) 558, 664, 1084
BstNI CCWGG 5 cut(s) 750, 817, 843, 1089, 1389
BstNSI RCATGY 2 cut(s) 1000, 1213
BstPAI GACNNNNGTC 1 cut(s) 1151
BstSCI CCNGG 7 cut(s) 434, 748, 815, 841, 1025, 1087, 1387
BstSFI CTRYAG 7 cut(s) 1115, 1214, 1373, 1481, 1586, 1616, 1658
BstUI CGCG 1 cut(s) 88
BstV2I GAAGAC 2 cut(s) 303, 1008
BstX2I RGATCY 1 cut(s) 1084
BstYI RGATCY 1 cut(s) 1084
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 439
BtsCI GGATG 3 cut(s) 55, 1611, 1698
BtsI GCAGTG 1 cut(s) 1112
BtsIMutI CAGTG 6 cut(s) 151, 1103, 1112, 1162, 1426, 1491
BveI ACCTGC 2 cut(s) 391, 1111
Cac8I GCNNGC 5 cut(s) 42, 78, 406, 998, 1668
CaiI CAGNNNCTG 4 cut(s) 1381, 1384, 1615, 1681
CciI TCATGA 2 cut(s) 567, 913
CfoI GCGC 1 cut(s) 708
Cfr13I GGNCC 2 cut(s) 437, 1123
CseI GACGC 1 cut(s) 1523
CsiI ACCWGGT 1 cut(s) 748
Csp6I GTAC 2 cut(s) 580, 604
CviQI GTAC 2 cut(s) 580, 604
DdeI CTNAG 2 cut(s) 267, 593
DpnI GATC 3 cut(s) 560, 666, 1086
DpnII GATC 3 cut(s) 558, 664, 1084
DraIII CACNNNGTG 1 cut(s) 1466
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 1136
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 1123
Eco57I CTGAAG 2 cut(s) 701, 1220
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 1123
EcoRII CCWGG 5 cut(s) 748, 815, 841, 1087, 1387
EcoT38I GRGCYC 1 cut(s) 1136
FaqI GGGAC 1 cut(s) 1109
FauNDI CATATG 1 cut(s) 864
FokI GGATG 3 cut(s) 62, 1618, 1685
FriOI GRGCYC 1 cut(s) 1136
GlaI GCGC 1 cut(s) 707
GsaI CCCAGC 2 cut(s) 309, 1408
GsuI CTGGAG 3 cut(s) 127, 408, 722
HaeII RGCGCY 1 cut(s) 709
HaeIII GGCC 1 cut(s) 439
HapII CCGG 2 cut(s) 435, 1026
HgaI GACGC 1 cut(s) 1523
HhaI GCGC 1 cut(s) 708
Hin6I GCGC 1 cut(s) 706
HinP1I GCGC 1 cut(s) 706
HinfI GANTC 8 cut(s) 19, 83, 497, 638, 1057, 1300, 1444, 1496
HpaII CCGG 2 cut(s) 435, 1026
HphI GGTGA 2 cut(s) 738, 1403
Hpy166II GTNNAC 1 cut(s) 1561
Hpy188I TCNGA 8 cut(s) 217, 270, 358, 664, 924, 1272, 1299, 1539
Hpy188III TCNNGA 6 cut(s) 160, 508, 568, 914, 1628, 1744
Hpy8I GTNNAC 1 cut(s) 1561
HpyAV CCTTC 4 cut(s) 565, 653, 751, 1244
HpyCH4III ACNGT 4 cut(s) 505, 718, 1395, 1575
HpyCH4IV ACGT 1 cut(s) 1728
HpyF3I CTNAG 2 cut(s) 267, 593
HpySE526I ACGT 1 cut(s) 1728
HspAI GCGC 1 cut(s) 706
Kzo9I GATC 3 cut(s) 558, 664, 1084
LmnI GCTCC 4 cut(s) 527, 703, 855, 1165
LweI GCATC 7 cut(s) 40, 234, 475, 1323, 1581, 1596, 1611
MabI ACCWGGT 1 cut(s) 748
MaeII ACGT 1 cut(s) 1728
MaeIII GTNAC 1 cut(s) 882
MalI GATC 3 cut(s) 560, 666, 1086
MboI GATC 3 cut(s) 558, 664, 1084
MboII GAAGA 6 cut(s) 136, 161, 303, 694, 822, 1008
MfeI CAATTG 2 cut(s) 71, 935
MflI RGATCY 1 cut(s) 1084
MhlI GDGCHC 2 cut(s) 1136, 1162
MlyI GAGTC 2 cut(s) 28, 632
MmeI TCCRAC 2 cut(s) 321, 1377
MseI TTAA 7 cut(s) 482, 690, 801, 1206, 1227, 1428, 1762
MslI CAYNNNNRTG 1 cut(s) 1439
MspA1I CMGCKG 2 cut(s) 1381, 1678
MspI CCGG 2 cut(s) 435, 1026
MspR9I CCNGG 7 cut(s) 436, 750, 817, 843, 1027, 1089, 1389
MunI CAATTG 2 cut(s) 71, 935
Mva1269I GAATGC 2 cut(s) 375, 1186
MvaI CCWGG 5 cut(s) 750, 817, 843, 1089, 1389
MvnI CGCG 1 cut(s) 88
NciI CCSGG 2 cut(s) 436, 1027
NdeI CATATG 1 cut(s) 864
NdeII GATC 3 cut(s) 558, 664, 1084
NlaIV GGNNCC 5 cut(s) 68, 1086, 1099, 1125, 1401
NmuCI GTSAC 1 cut(s) 882
NspI RCATGY 2 cut(s) 1000, 1213
PaeI GCATGC 1 cut(s) 1000
PagI TCATGA 2 cut(s) 567, 913
PaqCI CACCTGC 1 cut(s) 391
PctI GAATGC 2 cut(s) 375, 1186
PfeI GAWTC 6 cut(s) 83, 497, 1057, 1300, 1444, 1496
PflFI GACNNNGTC 1 cut(s) 262
PflMI CCANNNNNTGG 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 1087
PleI GAGTC 2 cut(s) 27, 632
PpsI GAGTC 2 cut(s) 27, 632
PpuMI RGGWCCY 1 cut(s) 1123
PshAI GACNNNNGTC 1 cut(s) 1151
PshBI ATTAAT 3 cut(s) 482, 801, 1227
Psp5II RGGWCCY 1 cut(s) 1123
Psp6I CCWGG 5 cut(s) 748, 815, 841, 1087, 1387
PspFI CCCAGC 2 cut(s) 305, 1404
PspGI CCWGG 5 cut(s) 748, 815, 841, 1087, 1387
PspN4I GGNNCC 5 cut(s) 68, 1086, 1099, 1125, 1401
PspPI GGNCC 2 cut(s) 437, 1123
PspPPI RGGWCCY 1 cut(s) 1123
PstI CTGCAG 4 cut(s) 1119, 1218, 1485, 1620
PstNI CAGNNNCTG 4 cut(s) 1381, 1384, 1615, 1681
PsuI RGATCY 1 cut(s) 1084
PsyI GACNNNGTC 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 1381
RsaI GTAC 2 cut(s) 581, 605
RsaNI GTAC 2 cut(s) 580, 604
RseI CAYNNNNRTG 1 cut(s) 1439
SaqAI TTAA 7 cut(s) 482, 690, 801, 1206, 1227, 1428, 1762
Sau3AI GATC 3 cut(s) 558, 664, 1084
Sau96I GGNCC 2 cut(s) 437, 1123
SchI GAGTC 2 cut(s) 28, 632
ScrFI CCNGG 7 cut(s) 436, 750, 817, 843, 1027, 1089, 1389
SduI GDGCHC 2 cut(s) 1136, 1162
SexAI ACCWGGT 1 cut(s) 748
SfaNI GCATC 7 cut(s) 40, 234, 475, 1323, 1581, 1596, 1611
SfcI CTRYAG 7 cut(s) 1115, 1214, 1373, 1481, 1586, 1616, 1658
SinI GGWCC 1 cut(s) 1123
SmiMI CAYNNNNRTG 1 cut(s) 1439
SmlI CTYRAG 8 cut(s) 27, 158, 327, 671, 900, 1307, 1502, 1565
SmoI CTYRAG 8 cut(s) 27, 158, 327, 671, 900, 1307, 1502, 1565
SphI GCATGC 1 cut(s) 1000
SsiI CCGC 7 cut(s) 80, 88, 473, 839, 860, 1101, 1678
SspI AATATT 1 cut(s) 453
StyD4I CCNGG 7 cut(s) 434, 748, 815, 841, 1025, 1087, 1387
TaaI ACNGT 4 cut(s) 505, 718, 1395, 1575
TaiI ACGT 1 cut(s) 1731
TaqI TCGA 2 cut(s) 227, 1140
TatI WGTACW 1 cut(s) 579
TauI GCSGC 3 cut(s) 91, 841, 1681
TfiI GAWTC 6 cut(s) 83, 497, 1057, 1300, 1444, 1496
Tru1I TTAA 7 cut(s) 482, 690, 801, 1206, 1227, 1428, 1762
Tru9I TTAA 7 cut(s) 482, 690, 801, 1206, 1227, 1428, 1762
TscAI CASTG 6 cut(s) 151, 1110, 1119, 1162, 1426, 1498
TseFI GTSAC 1 cut(s) 882
Tsp45I GTSAC 1 cut(s) 882
TspGWI ACGGA 1 cut(s) 1050
TspRI CASTG 6 cut(s) 151, 1110, 1119, 1162, 1426, 1498
Tth111I GACNNNGTC 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 1123
VspI ATTAAT 3 cut(s) 482, 801, 1227
XagI CCTNNNNNAGG 1 cut(s) 27
XapI RAATTY 6 cut(s) 231, 397, 726, 793, 1006, 1243
XceI RCATGY 2 cut(s) 1000, 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.