Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

9874723 .. 9876186

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGATCGCAGCACCGCCTTAACATTCGCATTCATCTGCATTATCGTCGCCGGCGTCGGCGGCCAAGCTCCGGCCGCTGCCCCCACTAAATCCCCCGCCACTCCCGCCCCCACCACCACACCCGCCGCCGCTCCCTCCAAGCCCAAATCCCCAGCTCCAGTCGCCACACCCGCCGCAACCCCAACCGCCACTCCACCTACACCCGTCGCCGCCGCTCCAGCTCCGGTAGCCACTCCTCCCGCCGCATCTCCCCCGGCTACAGCTCCGGTCAGCTCACCTCCCGCCAAATCTCCACCCACCGCTGCTCCCACACCCGCCGTCGTGCCCGTAGCACCGGTTTCTCCTCCCGCCACCACACCTGTGGCCTCTGCTCCTGCTCCGAGCACTAAGCCTGAAGCTCCTTCAGCCGCTCCCGGCCCCGCTATTCTCGGACCACCTGCACCGCCATCTGAGGCTCCCGCCGCTGAGGGTCCCTCCGGCGCCTTGTCTCCCGGTCCTTCAGGCTCCGCAGCCGATGAGAGTGGAGCAGAGAAGGTGGTGGTTGGATCCATTGCGTTGGGATGGGGTTTGATCATGGCTTTGTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

18.16

Weight (kDa)

6.13

Isoelectric Point (pI)

83.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	479
AccBSI	CCGCTC	3 cut(s)	131, 215, 410
AclWI	GGATC	3 cut(s)	12, 540, 553
AcoI	YGGCCR	2 cut(s)	61, 72
AcuI	CTGAAG	3 cut(s)	387, 414, 483
AcyI	GRCGYC	2 cut(s)	54, 480
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgeI	ACCGGT	1 cut(s)	334
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	6 cut(s)	68, 155, 221, 263, 273, 398
AluI	AGCT	6 cut(s)	68, 155, 221, 263, 273, 398
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	3 cut(s)	12, 540, 553
AoxI	GGCC	4 cut(s)	61, 72, 363, 415
ApeKI	GCWGC	4 cut(s)	9, 77, 302, 509
AsiGI	ACCGGT	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	4 cut(s)	416, 431, 470, 494
AsuC2I	CCSGG	3 cut(s)	254, 414, 492
AsuHPI	GGTGA	1 cut(s)	267
AvaII	GGWCC	3 cut(s)	431, 470, 494
BaeGI	GKGCMC	1 cut(s)	327
BamHI	GGATCC	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	386
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	4 cut(s)	21, 64, 289, 521
BccI	CCATC	2 cut(s)	454, 555
BceAI	ACGGC	1 cut(s)	302
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	3 cut(s)	254, 414, 492
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	1 cut(s)	589
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	483
BfuAI	ACCTGC	1 cut(s)	445
Bme1390I	CCNGG	3 cut(s)	254, 414, 492
Bme18I	GGWCC	3 cut(s)	431, 470, 494
BmgT120I	GGNCC	4 cut(s)	416, 431, 470, 494
BmiI	GGNNCC	7 cut(s)	418, 456, 471, 472, 481, 505, 547
BmrFI	CCNGG	3 cut(s)	254, 414, 492
BmsI	GCATC	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	2 cut(s)	141, 201
Bpu10I	CCTNAGC	1 cut(s)	465
BpuMI	CCSGG	3 cut(s)	254, 414, 492
BsaHI	GRCGYC	2 cut(s)	54, 480
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	3 cut(s)	223, 265, 334
BsaXI	ACNNNNNCTCC	4 cut(s)	175, 205, 289, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse118I	RCCGGY	2 cut(s)	50, 334
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	566
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	441, 456
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	2 cut(s)	225, 333
BseSI	GKGCMC	1 cut(s)	327
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	4 cut(s)	21, 64, 289, 521
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	4 cut(s)	63, 74, 365, 417
BshNI	GGYRCC	1 cut(s)	479
BshTI	ACCGGT	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	9 cut(s)	51, 71, 224, 254, 266, 335, 414, 477, 492
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	4 cut(s)	63, 74, 365, 417
Bsp1286I	GDGCHC	2 cut(s)	327, 386
Bsp143I	GATC	3 cut(s)	4, 545, 570
BspANI	GGCC	4 cut(s)	63, 74, 365, 417
BspCNI	CTCAG	2 cut(s)	442, 457
BspLI	GGNNCC	7 cut(s)	418, 456, 471, 472, 481, 505, 547
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	3 cut(s)	12, 540, 553
BspT107I	GGYRCC	1 cut(s)	479
BsrBI	CCGCTC	3 cut(s)	131, 215, 410
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	2 cut(s)	50, 334
BsrI	ACTGG	1 cut(s)	158
BssAI	RCCGGY	2 cut(s)	50, 334
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	4, 545, 570
BssNI	GRCGYC	2 cut(s)	54, 480
BstACI	GRCGYC	2 cut(s)	54, 480
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	387, 450, 465
BstF5I	GGATG	1 cut(s)	566
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	3 cut(s)	7, 548, 573
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	3 cut(s)	4, 545, 570
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	9 cut(s)	60, 74, 104, 161, 170, 218, 227, 404, 461
BstSCI	CCNGG	3 cut(s)	252, 412, 490
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	4 cut(s)	21, 64, 289, 521
BstX2I	RGATCY	1 cut(s)	545
BstXI	CCANNNNNNTGG	2 cut(s)	361, 556
BstYI	RGATCY	1 cut(s)	545
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	4 cut(s)	63, 74, 365, 417
BtsCI	GGATG	1 cut(s)	566
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	482
Cfr10I	RCCGGY	2 cut(s)	50, 334
Cfr13I	GGNCC	4 cut(s)	416, 431, 470, 494
CseI	GACGC	1 cut(s)	43
CspAI	ACCGGT	1 cut(s)	334
CviAII	CATG	1 cut(s)	574
DdeI	CTNAG	3 cut(s)	387, 450, 465
DinI	GGCGCC	1 cut(s)	481
DpnI	GATC	3 cut(s)	6, 547, 572
DpnII	GATC	3 cut(s)	4, 545, 570
EaeI	YGGCCR	2 cut(s)	61, 72
EagI	CGGCCG	1 cut(s)	72
EclXI	CGGCCG	1 cut(s)	72
Eco47I	GGWCC	3 cut(s)	431, 470, 494
Eco52I	CGGCCG	1 cut(s)	72
Eco57I	CTGAAG	3 cut(s)	387, 414, 483
EcoO109I	RGGNCCY	1 cut(s)	470
EgeI	GGCGCC	1 cut(s)	481
EheI	GGCGCC	1 cut(s)	481
FaeI	CATG	1 cut(s)	577
FaiI	YATR	1 cut(s)	575
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	570
FokI	GGATG	1 cut(s)	573
FspBI	CTAG	1 cut(s)	589
GlaI	GCGC	1 cut(s)	481
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	2 cut(s)	141, 201
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	4 cut(s)	63, 74, 365, 417
HapII	CCGG	9 cut(s)	51, 71, 224, 254, 266, 335, 414, 477, 492
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	482
Hin1I	GRCGYC	2 cut(s)	54, 480
Hin1II	CATG	1 cut(s)	577
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HpaII	CCGG	9 cut(s)	51, 71, 224, 254, 266, 335, 414, 477, 492
HphI	GGTGA	1 cut(s)	267
Hpy188I	TCNGA	3 cut(s)	381, 431, 451
Hpy99I	CGWCG	4 cut(s)	50, 59, 209, 323
HpyAV	CCTTC	3 cut(s)	411, 507, 526
HpyCH4V	TGCA	2 cut(s)	39, 440
HpyF10VI	GCNNNNNNNGC	9 cut(s)	60, 74, 104, 161, 170, 218, 227, 404, 461
HpyF3I	CTNAG	3 cut(s)	387, 450, 465
Hsp92I	GRCGYC	2 cut(s)	54, 480
Hsp92II	CATG	1 cut(s)	577
HspAI	GCGC	1 cut(s)	480
KasI	GGCGCC	1 cut(s)	479
KflI	GGGWCCC	1 cut(s)	470
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	3 cut(s)	4, 545, 570
Lsp1109I	GCAGC	4 cut(s)	21, 64, 289, 521
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	589
MalI	GATC	3 cut(s)	6, 547, 572
MbiI	CCGCTC	3 cut(s)	131, 215, 410
MboI	GATC	3 cut(s)	4, 545, 570
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	2 cut(s)	327, 386
Mly113I	GGCGCC	1 cut(s)	480
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	8 cut(s)	145, 246, 288, 354, 376, 445, 460, 484
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	3 cut(s)	77, 302, 464
MspI	CCGG	9 cut(s)	51, 71, 224, 254, 266, 335, 414, 477, 492
MspR9I	CCNGG	3 cut(s)	254, 414, 492
Mva1269I	GAATGC	1 cut(s)	29
MwoI	GCNNNNNNNGC	9 cut(s)	60, 74, 104, 161, 170, 218, 227, 404, 461
NaeI	GCCGGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	480
NciI	CCSGG	3 cut(s)	254, 414, 492
NdeII	GATC	3 cut(s)	4, 545, 570
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	577
NlaIV	GGNNCC	7 cut(s)	418, 456, 471, 472, 481, 505, 547
OliI	CACNNNNGTG	1 cut(s)	359
PaqCI	CACCTGC	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	29
PdiI	GCCGGC	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	334
PluTI	GGCGCC	1 cut(s)	483
PpuMI	RGGWCCY	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	151
PspN4I	GGNNCC	7 cut(s)	418, 456, 471, 472, 481, 505, 547
PspPI	GGNCC	4 cut(s)	416, 431, 470, 494
PspPPI	RGGWCCY	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	4, 545, 570
Sau96I	GGNCC	4 cut(s)	416, 431, 470, 494
ScrFI	CCNGG	3 cut(s)	254, 414, 492
SduI	GDGCHC	2 cut(s)	327, 386
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	258
SfoI	GGCGCC	1 cut(s)	481
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	3 cut(s)	431, 470, 494
SmiMI	CAYNNNNRTG	1 cut(s)	359
SspDI	GGCGCC	1 cut(s)	479
SspMI	CTAG	1 cut(s)	589
StyD4I	CCNGG	3 cut(s)	252, 412, 490
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseI	GCWGC	4 cut(s)	9, 77, 302, 509
TspDTI	ATGAA	1 cut(s)	22
VpaK11BI	GGWCC	3 cut(s)	431, 470, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XspI	CTAG	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.