Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

18563360 .. 18564735

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48127

Sequence Viewer

CDS Protein Promoter (2k)

Length: 129 bp

ATGAGCCCTGAAGCCTCATCTCCCGGTCCTTCCGGCGCCGCAGCCGATGAGAGTGGAGCAGAGAAGGTGCATTACATGGTTGGATCGATTGCATTGGGATGGGGTGTGATCATGGCATTGTGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

42

Amino Acids

4.27

Weight (kDa)

4.4

Isoelectric Point (pI)

78.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	93
BclI	TGATCA	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	2 cut(s)	39, 42
BlsI	GCNGC	2 cut(s)	40, 43
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	86
BseGI	GGATG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	35
BshVI	ATCGAT	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	24, 33
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	83, 108
BspACI	CCGC	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	35
BssMI	GATC	2 cut(s)	83, 108
BssNI	GRCGYC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	104
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	2 cut(s)	86, 111
BstMBI	GATC	2 cut(s)	83, 108
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	26
ClaI	ATCGAT	1 cut(s)	86
CviAII	CATG	2 cut(s)	76, 112
CviJI	RGCY	3 cut(s)	6, 14, 44
CviKI_1	RGCY	3 cut(s)	6, 14, 44
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	2 cut(s)	85, 110
DpnII	GATC	2 cut(s)	83, 108
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
FaeI	CATG	2 cut(s)	79, 115
FaiI	YATR	2 cut(s)	77, 113
FatI	CATG	2 cut(s)	75, 111
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	39, 42
FokI	GGATG	1 cut(s)	111
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	39, 42
FspBI	CTAG	1 cut(s)	127
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	2 cut(s)	39, 42
HaeII	RGCGCY	1 cut(s)	39
HapII	CCGG	2 cut(s)	24, 33
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	79, 115
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HpaII	CCGG	2 cut(s)	24, 33
HpyAV	CCTTC	2 cut(s)	39, 58
HpyCH4V	TGCA	2 cut(s)	70, 92
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	79, 115
HspAI	GCGC	1 cut(s)	36
KasI	GGCGCC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	83, 108
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	3 cut(s)	21, 37, 46
Lsp1109I	GCAGC	1 cut(s)	53
MaeI	CTAG	1 cut(s)	127
MalI	GATC	2 cut(s)	85, 110
MboI	GATC	2 cut(s)	83, 108
MhlI	GDGCHC	1 cut(s)	8
Mly113I	GGCGCC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	1 cut(s)	25
MslI	CAYNNNNRTG	1 cut(s)	97
MspI	CCGG	2 cut(s)	24, 33
MspR9I	CCNGG	1 cut(s)	24
NarI	GGCGCC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	83, 108
NlaIII	CATG	2 cut(s)	79, 115
NlaIV	GGNNCC	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	40, 43
PluTI	GGCGCC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	97
SatI	GCNGC	2 cut(s)	39, 42
Sau3AI	GATC	2 cut(s)	83, 108
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	1 cut(s)	69
SfoI	GGCGCC	1 cut(s)	37
SgeI	CNNG	6 cut(s)	20, 35, 36, 45, 88, 124
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	97
SsiI	CCGC	1 cut(s)	39
SspDI	GGCGCC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	22
TaqI	TCGA	1 cut(s)	86
TauI	GCSGC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	26
XspI	CTAG	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.