Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

19991945 .. 19993379

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1094200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATCGCAAGACTTTGTTCTTCCTAGGCTTTGTCTGCATTGTCTTCGCCGGTGTCGGGGGCCAATCTCCCCCCGCCAACCCACCCACCACTAGCACTCCTGCTCCCCCTGCCACACCCACAACTCCACCATCCAACAACCAGCCACCACCCTCTCCCCCCGCCAGCACTCCACCTCCCGCATCCACCCCTCCTCCCACGTCAGCTCCTCCTCCCGTTGCCACAGCACCGCCCCCAGTTACCACGTCTCCGCCTCCATCAACTCCTCCCCCTGTCTCAGCTCCCCCGCCGGCCACCCCACCTCCAGTCAACGCTCCTCCACCCGCAACTCCACCTCCAGCTACTCCTCCACCCGCTACTCCACCACCGGCCACACCACCACCAGCCACTCCGCCACCCGCCACTCCACCACCAGCAACACCACCACCGGCCCCTCTTGCGTCTCCGCCAGCTCAGGTACCAGCTCCAGCACCCACCGTGAAATCTCCAGCTTTGGCGCCTTCTCCCCTCGCACTGGCCCCCGGCCCACCCGCACCTCCAGTCGGAGCTCCAGCGCCGGCCCTCGATTCCGGCGCTCCGGGACCGTCATCTTCAGTTGATCAGAGTGGAGCAGAGAAGATGTGGTCGATGCAGAAGATGGTAGGAAGCTTGGTGTTTGGGTGGGCTGTCCTCAGCTTGATGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

22.01

Weight (kDa)

7.92

Isoelectric Point (pI)

101.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	2 cut(s)	457, 496
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	291, 369
AcuI	CTGAAG	1 cut(s)	576
AcyI	GRCGYC	1 cut(s)	497
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	3 cut(s)	57, 514, 542
AjiI	CACGTC	2 cut(s)	201, 246
AluBI	AGCT	9 cut(s)	206, 281, 341, 452, 464, 491, 548, 648, 675
AluI	AGCT	9 cut(s)	206, 281, 341, 452, 464, 491, 548, 648, 675
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	3 cut(s)	252, 280, 447
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	7 cut(s)	61, 291, 369, 429, 516, 523, 558
Asp718I	GGTACC	1 cut(s)	457
AspA2I	CCTAGG	1 cut(s)	25
AspLEI	GCGC	3 cut(s)	499, 556, 575
AspS9I	GGNCC	6 cut(s)	61, 430, 517, 524, 559, 581
AsuC2I	CCSGG	2 cut(s)	522, 579
AvaII	GGWCC	1 cut(s)	581
AvrII	CCTAGG	1 cut(s)	25
BanI	GGYRCC	2 cut(s)	457, 496
BanII	GRGCYC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	550
BbvCI	CCTCAGC	1 cut(s)	671
BccI	CCATC	3 cut(s)	139, 265, 631
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	2 cut(s)	522, 579
BcoDI	GTCTC	3 cut(s)	252, 280, 447
BfaI	CTAG	2 cut(s)	26, 93
BfoI	RGCGCY	3 cut(s)	500, 557, 576
BlnI	CCTAGG	1 cut(s)	25
Bme1390I	CCNGG	2 cut(s)	522, 579
Bme18I	GGWCC	1 cut(s)	581
BmgBI	CACGTC	2 cut(s)	201, 246
BmgT120I	GGNCC	6 cut(s)	61, 430, 517, 524, 559, 581
BmiI	GGNNCC	6 cut(s)	62, 432, 459, 498, 519, 582
BmrFI	CCNGG	2 cut(s)	522, 579
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	3 cut(s)	191, 618, 669
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	6 cut(s)	288, 321, 450, 471, 522, 534
Bpu10I	CCTNAGC	2 cut(s)	453, 671
BpuMI	CCSGG	2 cut(s)	522, 579
BsaHI	GRCGYC	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	25, 520
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 514, 542
Bse118I	RCCGGY	5 cut(s)	50, 289, 367, 427, 556
Bse1I	ACTGG	4 cut(s)	236, 305, 519, 539
BseDI	CCNNGG	2 cut(s)	25, 520
BseGI	GGATG	2 cut(s)	131, 182
BseLI	CCNNNNNNNGG	3 cut(s)	57, 514, 542
BseMII	CTCAG	3 cut(s)	291, 467, 685
BseNI	ACTGG	4 cut(s)	236, 305, 519, 539
BseRI	GAGGAG	6 cut(s)	183, 198, 201, 255, 306, 336
BshFI	GGCC	7 cut(s)	63, 293, 371, 431, 518, 525, 560
BshNI	GGYRCC	2 cut(s)	457, 496
BsiHKAI	GWGCWC	1 cut(s)	550
BsiSI	CCGG	8 cut(s)	51, 290, 368, 428, 522, 557, 570, 578
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	3 cut(s)	57, 514, 542
BsmAI	GTCTC	3 cut(s)	252, 280, 447
BsmBI	CGTCTC	2 cut(s)	252, 447
BsmFI	GGGAC	1 cut(s)	594
BsnI	GGCC	7 cut(s)	63, 293, 371, 431, 518, 525, 560
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	2 cut(s)	4, 598
BspANI	GGCC	7 cut(s)	63, 293, 371, 431, 518, 525, 560
BspCNI	CTCAG	3 cut(s)	290, 466, 684
BspLI	GGNNCC	6 cut(s)	62, 432, 459, 498, 519, 582
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	457, 496
BsrFI	RCCGGY	5 cut(s)	50, 289, 367, 427, 556
BsrI	ACTGG	4 cut(s)	236, 305, 519, 539
BssAI	RCCGGY	5 cut(s)	50, 289, 367, 427, 556
BssECI	CCNNGG	2 cut(s)	25, 520
BssMI	GATC	2 cut(s)	4, 598
BssNI	GRCGYC	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	478, 585
BstACI	GRCGYC	1 cut(s)	497
BstC8I	GCNNGC	4 cut(s)	166, 291, 450, 558
BstDEI	CTNAG	3 cut(s)	277, 453, 671
BstF5I	GGATG	2 cut(s)	131, 182
BstH2I	RGCGCY	3 cut(s)	500, 557, 576
BstHHI	GCGC	3 cut(s)	499, 556, 575
BstKTI	GATC	2 cut(s)	7, 601
BstMAI	GTCTC	3 cut(s)	252, 280, 447
BstMBI	GATC	2 cut(s)	4, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 110, 437
BstSCI	CCNGG	2 cut(s)	520, 577
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	7 cut(s)	63, 293, 371, 431, 518, 525, 560
BtrI	CACGTC	2 cut(s)	201, 246
BtsCI	GGATG	2 cut(s)	131, 182
BtsIMutI	CAGTG	1 cut(s)	512
Cac8I	GCNNGC	4 cut(s)	166, 291, 450, 558
CfoI	GCGC	3 cut(s)	499, 556, 575
Cfr10I	RCCGGY	5 cut(s)	50, 289, 367, 427, 556
Cfr13I	GGNCC	6 cut(s)	61, 430, 517, 524, 559, 581
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	458
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	3 cut(s)	277, 453, 671
DinI	GGCGCC	1 cut(s)	498
DpnI	GATC	2 cut(s)	6, 600
DpnII	GATC	2 cut(s)	4, 598
EaeI	YGGCCR	2 cut(s)	291, 369
EciI	GGCGGA	3 cut(s)	240, 381, 435
Ecl136II	GAGCTC	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	581
Eco53kI	GAGCTC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	576
EcoICRI	GAGCTC	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	550
EgeI	GGCGCC	1 cut(s)	498
EheI	GGCGCC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	25
Esp3I	CGTCTC	2 cut(s)	252, 447
FaqI	GGGAC	1 cut(s)	594
FauI	CCCGC	8 cut(s)	82, 169, 187, 294, 331, 361, 406, 538
FbaI	TGATCA	1 cut(s)	598
FokI	GGATG	2 cut(s)	118, 169
FriOI	GRGCYC	1 cut(s)	550
FspBI	CTAG	2 cut(s)	26, 93
GlaI	GCGC	3 cut(s)	498, 555, 574
GsuI	CTGGAG	6 cut(s)	288, 321, 450, 471, 522, 534
HaeII	RGCGCY	3 cut(s)	500, 557, 576
HaeIII	GGCC	7 cut(s)	63, 293, 371, 431, 518, 525, 560
HapII	CCGG	8 cut(s)	51, 290, 368, 428, 522, 557, 570, 578
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	3 cut(s)	499, 556, 575
Hin1I	GRCGYC	1 cut(s)	497
Hin6I	GCGC	3 cut(s)	497, 554, 573
HinP1I	GCGC	3 cut(s)	497, 554, 573
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	646
HinfI	GANTC	1 cut(s)	566
HpaII	CCGG	8 cut(s)	51, 290, 368, 428, 522, 557, 570, 578
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	545, 603
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	510
HpyCH4III	ACNGT	2 cut(s)	478, 585
HpyCH4IV	ACGT	2 cut(s)	200, 245
HpyCH4V	TGCA	2 cut(s)	39, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 110, 437
HpyF3I	CTNAG	3 cut(s)	277, 453, 671
HpySE526I	ACGT	2 cut(s)	200, 245
Hsp92I	GRCGYC	1 cut(s)	497
HspAI	GCGC	3 cut(s)	497, 554, 573
KasI	GGCGCC	1 cut(s)	496
KpnI	GGTACC	1 cut(s)	461
KroI	GCCGGC	2 cut(s)	289, 556
KroNI	GCCGGC	2 cut(s)	291, 558
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	2 cut(s)	4, 598
LmnI	GCTCC	9 cut(s)	109, 211, 286, 319, 469, 545, 553, 580, 608
LweI	GCATC	3 cut(s)	191, 618, 669
MaeI	CTAG	2 cut(s)	26, 93
MaeII	ACGT	2 cut(s)	200, 245
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	6, 600
MboI	GATC	2 cut(s)	4, 598
MboII	GAAGA	5 cut(s)	13, 37, 582, 628, 646
MhlI	GDGCHC	1 cut(s)	550
Mly113I	GGCGCC	1 cut(s)	497
MmeI	TCCRAC	2 cut(s)	159, 523
MroNI	GCCGGC	2 cut(s)	289, 556
MspI	CCGG	8 cut(s)	51, 290, 368, 428, 522, 557, 570, 578
MspR9I	CCNGG	2 cut(s)	522, 579
MwoI	GCNNNNNNNGC	3 cut(s)	36, 110, 437
NaeI	GCCGGC	2 cut(s)	291, 558
NarI	GGCGCC	1 cut(s)	497
NciI	CCSGG	2 cut(s)	522, 579
NdeII	GATC	2 cut(s)	4, 598
NgoMIV	GCCGGC	2 cut(s)	289, 556
NlaIV	GGNNCC	6 cut(s)	62, 432, 459, 498, 519, 582
PdiI	GCCGGC	2 cut(s)	291, 558
PfeI	GAWTC	1 cut(s)	566
PfoI	TCCNGGA	1 cut(s)	577
PluTI	GGCGCC	1 cut(s)	500
Psp124BI	GAGCTC	1 cut(s)	550
PspN4I	GGNNCC	6 cut(s)	62, 432, 459, 498, 519, 582
PspPI	GGNCC	6 cut(s)	61, 430, 517, 524, 559, 581
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SacI	GAGCTC	1 cut(s)	550
Sau3AI	GATC	2 cut(s)	4, 598
Sau96I	GGNCC	6 cut(s)	61, 430, 517, 524, 559, 581
ScrFI	CCNGG	2 cut(s)	522, 579
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	3 cut(s)	191, 618, 669
SfoI	GGCGCC	1 cut(s)	498
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	581
SspDI	GGCGCC	1 cut(s)	496
SspMI	CTAG	2 cut(s)	26, 93
SstI	GAGCTC	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	520, 577
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	478, 585
TaiI	ACGT	2 cut(s)	203, 248
TaqI	TCGA	2 cut(s)	564, 626
TfiI	GAWTC	1 cut(s)	566
TscAI	CASTG	1 cut(s)	519
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	581
XmaJI	CCTAGG	1 cut(s)	25
XspI	CTAG	2 cut(s)	26, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.