Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006416.1

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Forward (+)

80053 .. 81236

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006416.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggatcgcagcaccgccttaacgttcgcgttcatctgcattatcgtcgccggcgtcggaggtcaagctccggcttccgcacccactaaatctaccgccactccggcttccgcacccactaaatctcccgccactcccgcccccaccacatcaccatccgccgctccttcaaagcccaagtcccccgctcccgtcgccacaccagcctcaactccgaccgctgctccacctacccctgtcaccgccgctccaactccggtagccactcctcccgcgaaatctccgccgactgctgcacctgcaccggccgtaactccggtcagcgcgcccaccgcttctcctcccgccaaatctccaccgaccgctgctcccacaccaaccgccgtccccgtagcaccggtttctcctccctccatcgcacctgctgctccggctccaaaatccgagactccttcagctgctcccggtccagaggctgtcagtccacccgcaccgccacctgagacccccggaatgagccctgaagccggtccttccggcggcgcagctgatgagagtggagcagagaaggtgcattacgtggttgggtcgattgcattgggatggggtgtgatcatggcattgtggttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

19.86

Weight (kDa)

7.87

Isoelectric Point (pI)

86.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	307, 430
Acc36I	ACCTGC	2 cut(s)	307, 430
AccBSI	CCGCTC	3 cut(s)	164, 188, 248
AccII	CGCG	3 cut(s)	29, 275, 326
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	306
AcuI	CTGAAG	2 cut(s)	438, 543
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	527, 539
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	171
AluBI	AGCT	3 cut(s)	68, 458, 548
AluI	AGCT	3 cut(s)	68, 458, 548
Alw26I	GTCTC	2 cut(s)	440, 497
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	7 cut(s)	9, 221, 293, 365, 425, 458, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AsiGI	ACCGGT	1 cut(s)	397
AspLEI	GCGC	3 cut(s)	326, 328, 545
AspS9I	GGNCC	2 cut(s)	467, 530
AsuC2I	CCSGG	2 cut(s)	465, 510
AsuHPI	GGTGA	2 cut(s)	144, 232
AvaII	GGWCC	2 cut(s)	467, 530
BanII	GRGCYC	1 cut(s)	521
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
BbvI	GCAGC	7 cut(s)	21, 208, 280, 352, 412, 445, 557
BccI	CCATC	3 cut(s)	163, 422, 597
BceAI	ACGGC	2 cut(s)	293, 368
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	2 cut(s)	465, 510
BcoDI	GTCTC	2 cut(s)	440, 497
BfaI	CTAG	1 cut(s)	631
BfuAI	ACCTGC	2 cut(s)	307, 430
BglI	GCCNNNNNGGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	465, 510
Bme18I	GGWCC	2 cut(s)	467, 530
BmgT120I	GGNCC	2 cut(s)	467, 530
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	2 cut(s)	465, 510
BpuMI	CCSGG	2 cut(s)	465, 510
BsaAI	YACGTR	1 cut(s)	580
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	3 cut(s)	256, 316, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 539
Bse118I	RCCGGY	4 cut(s)	50, 304, 397, 527
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	2 cut(s)	155, 608
BseLI	CCNNNNNNNGG	2 cut(s)	527, 539
BseMII	CTCAG	1 cut(s)	492
BsePI	GCGCGC	1 cut(s)	324
BseRI	GAGGAG	3 cut(s)	258, 330, 396
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	7 cut(s)	21, 208, 280, 352, 412, 445, 557
BsgI	GTGCAG	2 cut(s)	279, 285
Bsh1236I	CGCG	3 cut(s)	29, 275, 326
Bsh1285I	CGRYCG	3 cut(s)	219, 309, 363
BshFI	GGCC	1 cut(s)	308
BshTI	ACCGGT	1 cut(s)	397
BsiEI	CGRYCG	3 cut(s)	219, 309, 363
BslFI	GGGAC	2 cut(s)	166, 371
BslI	CCNNNNNNNGG	2 cut(s)	527, 539
BsmAI	GTCTC	2 cut(s)	440, 497
BsmFI	GGGAC	2 cut(s)	166, 371
BsnI	GGCC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	4, 612
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	3 cut(s)	29, 275, 326
BspLI	GGNNCC	1 cut(s)	435
BspMI	ACCTGC	2 cut(s)	307, 430
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	3 cut(s)	164, 188, 248
BsrFI	RCCGGY	4 cut(s)	50, 304, 397, 527
BssAI	RCCGGY	4 cut(s)	50, 304, 397, 527
BssECI	CCNNGG	1 cut(s)	508
BssHII	GCGCGC	1 cut(s)	324
BssMI	GATC	2 cut(s)	4, 612
BssNI	GRCGYC	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	52, 326
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	155, 608
BstFNI	CGCG	3 cut(s)	29, 275, 326
BstHHI	GCGC	3 cut(s)	326, 328, 545
BstKTI	GATC	2 cut(s)	7, 615
BstMAI	GTCTC	2 cut(s)	440, 497
BstMBI	GATC	2 cut(s)	4, 612
BstMCI	CGRYCG	3 cut(s)	219, 309, 363
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 137, 194, 203, 299, 332, 425, 431
BstSCI	CCNGG	2 cut(s)	463, 508
BstUI	CGCG	3 cut(s)	29, 275, 326
BstV1I	GCAGC	7 cut(s)	21, 208, 280, 352, 412, 445, 557
BstZI	CGGCCG	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	155, 608
BveI	ACCTGC	2 cut(s)	307, 430
Cac8I	GCNNGC	2 cut(s)	52, 326
CaiI	CAGNNNCTG	1 cut(s)	476
CfoI	GCGC	3 cut(s)	326, 328, 545
Cfr10I	RCCGGY	4 cut(s)	50, 304, 397, 527
Cfr13I	GGNCC	2 cut(s)	467, 530
CseI	GACGC	1 cut(s)	43
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	1 cut(s)	616
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	2 cut(s)	6, 614
DpnII	GATC	2 cut(s)	4, 612
EaeI	YGGCCR	1 cut(s)	306
EagI	CGGCCG	1 cut(s)	306
EciI	GGCGGA	2 cut(s)	148, 273
EclXI	CGGCCG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	521
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	2 cut(s)	467, 530
Eco52I	CGGCCG	1 cut(s)	306
Eco57I	CTGAAG	2 cut(s)	438, 543
EcoT38I	GRGCYC	1 cut(s)	521
FaeI	CATG	1 cut(s)	619
FaiI	YATR	1 cut(s)	617
FaqI	GGGAC	2 cut(s)	166, 371
FatI	CATG	1 cut(s)	615
FauI	CCCGC	6 cut(s)	136, 145, 193, 280, 352, 496
FbaI	TGATCA	1 cut(s)	612
FokI	GGATG	2 cut(s)	142, 615
FriOI	GRGCYC	1 cut(s)	521
FspBI	CTAG	1 cut(s)	631
GlaI	GCGC	3 cut(s)	325, 327, 544
HaeIII	GGCC	1 cut(s)	308
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	3 cut(s)	326, 328, 545
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	619
Hin6I	GCGC	3 cut(s)	324, 326, 543
HinP1I	GCGC	3 cut(s)	324, 326, 543
HinfI	GANTC	1 cut(s)	448
HphI	GGTGA	2 cut(s)	144, 232
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	3 cut(s)	59, 216, 445
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	3 cut(s)	50, 59, 197
HpyAV	CCTTC	4 cut(s)	177, 462, 543, 562
HpyCH4IV	ACGT	2 cut(s)	23, 579
HpyCH4V	TGCA	5 cut(s)	39, 296, 302, 574, 596
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 137, 194, 203, 299, 332, 425, 431
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	2 cut(s)	23, 579
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	619
HspAI	GCGC	3 cut(s)	324, 326, 543
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	2 cut(s)	4, 612
Lsp1109I	GCAGC	7 cut(s)	21, 208, 280, 352, 412, 445, 557
MaeI	CTAG	1 cut(s)	631
MaeII	ACGT	2 cut(s)	23, 579
MaeIII	GTNAC	2 cut(s)	238, 310
MalI	GATC	2 cut(s)	6, 614
MbiI	CCGCTC	3 cut(s)	164, 188, 248
MboI	GATC	2 cut(s)	4, 612
MhlI	GDGCHC	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	3 cut(s)	37, 239, 275
MnlI	CCTC	7 cut(s)	53, 217, 279, 351, 417, 421, 466
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	601
MspA1I	CMGCKG	4 cut(s)	221, 365, 458, 548
MspR9I	CCNGG	2 cut(s)	465, 510
MvnI	CGCG	3 cut(s)	29, 275, 326
MwoI	GCNNNNNNNGC	8 cut(s)	104, 137, 194, 203, 299, 332, 425, 431
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	2 cut(s)	465, 510
NdeII	GATC	2 cut(s)	4, 612
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	619
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	238
PaqCI	CACCTGC	2 cut(s)	307, 430
PauI	GCGCGC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	397
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Ppu21I	YACGTR	1 cut(s)	580
Psp1406I	AACGTT	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	2 cut(s)	467, 530
PstNI	CAGNNNCTG	1 cut(s)	476
PteI	GCGCGC	1 cut(s)	324
PvuII	CAGCTG	2 cut(s)	458, 548
RseI	CAYNNNNRTG	1 cut(s)	601
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	4, 612
Sau96I	GGNCC	2 cut(s)	467, 530
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	2 cut(s)	465, 510
SduI	GDGCHC	1 cut(s)	521
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	467, 530
SmiMI	CAYNNNNRTG	1 cut(s)	601
SspMI	CTAG	1 cut(s)	631
StyD4I	CCNGG	2 cut(s)	463, 508
TaiI	ACGT	2 cut(s)	26, 582
TaqI	TCGA	1 cut(s)	590
TauI	GCSGC	3 cut(s)	164, 248, 543
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	7 cut(s)	9, 221, 293, 365, 425, 458, 545
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	467, 530
XspI	CTAG	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.