Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Forward (+)

74216296 .. 74217830

Gene Structure 1535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATCGCAGCACCGCCTTAACGTTCGCGTTCATCTGCATTATCGTCGCCGGCGTCGGAGGTCAAGCTCCGGCTTCCGCACCCACTAAATCTACCGCCACTCCGGCTTCGTCACCCACTAAATCTCCCGCCACTCCCTCCCCCACCACTTCACCATCCGCCGCTCCTTCAAAGCCCAAGTCCCCAGCTCCCGTCGCCACACCGGCCTCAACTCCGACCGCCGCTCCACCTACCCCCGTCGCCGCCGCTCCAACTCCGGTAGCCACTCCTCCCGCGAAATCTCCGCCGACTGCTGCACCTACACCGGCCGTAACTCCGGTCAGCGCACCCCCCGCCACTCCTCCCTCCAAATCTCCACCGACTGCTGCTCCCACACCGGCCGCCGTCCCCGTAGCACCGGTTTCTCCTCCCTCCATGGCCCCCACTGCTCCGGCTCCAAAATCCGAGACTCCTTCAGCTGCTCCCGGTCCAGCGACTCTCAGTCCACCCGCACCGCCAACTGAGTCCCCCGGAATGACCCCTGAAGGCGCTATGAGCCCCGCAGCCGATGAGAGTGGAGCAGAGAAGGTGCATTACATGGTTGGATCGATTGCATTGGGATGGGGAGTGATCATGGCATTGTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

19.9

Weight (kDa)

8.85

Isoelectric Point (pI)

91.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	164, 224, 248
AccII	CGCG	2 cut(s)	29, 275
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	2 cut(s)	12, 592
AcoI	YGGCCR	2 cut(s)	306, 378
AcuI	CTGAAG	2 cut(s)	438, 543
AcyI	GRCGYC	1 cut(s)	54
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	171
AhdI	GACNNNNNGTC	1 cut(s)	480
AluBI	AGCT	3 cut(s)	68, 188, 458
AluI	AGCT	3 cut(s)	68, 188, 458
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	2 cut(s)	12, 592
AoxI	GGCC	4 cut(s)	204, 306, 378, 417
ApeKI	GCWGC	5 cut(s)	9, 293, 365, 458, 542
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AsiGI	ACCGGT	1 cut(s)	397
AspLEI	GCGC	2 cut(s)	326, 530
AspS9I	GGNCC	2 cut(s)	418, 467
AsuC2I	CCSGG	2 cut(s)	465, 510
AsuHPI	GGTGA	2 cut(s)	105, 144
AvaII	GGWCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	539
BarI	GAAGNNNNNNTAC	2 cut(s)	557, 589
BbvI	GCAGC	5 cut(s)	21, 280, 352, 445, 554
BccI	CCATC	2 cut(s)	163, 594
BceAI	ACGGC	2 cut(s)	293, 368
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BclI	TGATCA	1 cut(s)	609
BcnI	CCSGG	2 cut(s)	465, 510
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	628
BfoI	RGCGCY	1 cut(s)	531
BglI	GCCNNNNNGGC	2 cut(s)	104, 203
Bme1390I	CCNGG	2 cut(s)	465, 510
Bme18I	GGWCC	1 cut(s)	467
BmeRI	GACNNNNNGTC	1 cut(s)	480
BmgT120I	GGNCC	2 cut(s)	418, 467
BmiI	GGNNCC	2 cut(s)	420, 435
BmrFI	CCNGG	2 cut(s)	465, 510
BpuMI	CCSGG	2 cut(s)	465, 510
Bsa29I	ATCGAT	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	414, 508
BsaWI	WCCGGW	3 cut(s)	256, 316, 397
BsaXI	ACNNNNNCTCC	8 cut(s)	85, 109, 115, 139, 208, 238, 352, 382
Bse118I	RCCGGY	5 cut(s)	50, 202, 304, 376, 397
BseCI	ATCGAT	1 cut(s)	587
BseDI	CCNNGG	2 cut(s)	414, 508
BseGI	GGATG	2 cut(s)	155, 605
BseMII	CTCAG	2 cut(s)	492, 493
BseRI	GAGGAG	3 cut(s)	258, 330, 396
BseX3I	CGGCCG	2 cut(s)	306, 378
BseXI	GCAGC	5 cut(s)	21, 280, 352, 445, 554
BseYI	CCCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	2 cut(s)	29, 275
Bsh1285I	CGRYCG	3 cut(s)	219, 309, 381
BshFI	GGCC	4 cut(s)	206, 308, 380, 419
BshTI	ACCGGT	1 cut(s)	397
BshVI	ATCGAT	1 cut(s)	587
BsiEI	CGRYCG	3 cut(s)	219, 309, 381
BslFI	GGGAC	3 cut(s)	166, 371, 490
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	3 cut(s)	166, 371, 490
BsnI	GGCC	4 cut(s)	206, 308, 380, 419
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	3 cut(s)	4, 584, 609
Bsp19I	CCATGG	1 cut(s)	414
BspANI	GGCC	4 cut(s)	206, 308, 380, 419
BspCNI	CTCAG	2 cut(s)	492, 493
BspDI	ATCGAT	1 cut(s)	587
BspFNI	CGCG	2 cut(s)	29, 275
BspLI	GGNNCC	2 cut(s)	420, 435
BspPI	GGATC	2 cut(s)	12, 592
BsrBI	CCGCTC	3 cut(s)	164, 224, 248
BsrFI	RCCGGY	5 cut(s)	50, 202, 304, 376, 397
BssAI	RCCGGY	5 cut(s)	50, 202, 304, 376, 397
BssECI	CCNNGG	2 cut(s)	414, 508
BssMI	GATC	3 cut(s)	4, 584, 609
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	414
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	479, 501
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	155, 605
BstFNI	CGCG	2 cut(s)	29, 275
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	2 cut(s)	326, 530
BstKTI	GATC	3 cut(s)	7, 587, 612
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	3 cut(s)	4, 584, 609
BstMCI	CGRYCG	3 cut(s)	219, 309, 381
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 194, 203, 332, 425, 534
BstSCI	CCNGG	2 cut(s)	463, 508
BstUI	CGCG	2 cut(s)	29, 275
BstV1I	GCAGC	5 cut(s)	21, 280, 352, 445, 554
BstZI	CGGCCG	2 cut(s)	306, 378
Bsu15I	ATCGAT	1 cut(s)	587
BsuRI	GGCC	4 cut(s)	206, 308, 380, 419
BsuTUI	ATCGAT	1 cut(s)	587
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	155, 605
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	2 cut(s)	326, 530
Cfr10I	RCCGGY	5 cut(s)	50, 202, 304, 376, 397
Cfr13I	GGNCC	2 cut(s)	418, 467
ClaI	ATCGAT	1 cut(s)	587
CseI	GACGC	1 cut(s)	43
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	3 cut(s)	415, 577, 613
DdeI	CTNAG	2 cut(s)	479, 501
DpnI	GATC	3 cut(s)	6, 586, 611
DpnII	GATC	3 cut(s)	4, 584, 609
DriI	GACNNNNNGTC	1 cut(s)	480
EaeI	YGGCCR	2 cut(s)	306, 378
EagI	CGGCCG	2 cut(s)	306, 378
Eam1105I	GACNNNNNGTC	1 cut(s)	480
EciI	GGCGGA	2 cut(s)	148, 273
EclXI	CGGCCG	2 cut(s)	306, 378
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	467
Eco52I	CGGCCG	2 cut(s)	306, 378
Eco57I	CTGAAG	2 cut(s)	438, 543
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	3 cut(s)	418, 580, 616
FaiI	YATR	4 cut(s)	416, 533, 578, 614
FaqI	GGGAC	3 cut(s)	166, 371, 490
FatI	CATG	3 cut(s)	414, 576, 612
FauI	CCCGC	5 cut(s)	136, 280, 340, 496, 547
FbaI	TGATCA	1 cut(s)	609
FokI	GGATG	2 cut(s)	142, 612
FriOI	GRGCYC	1 cut(s)	539
FspBI	CTAG	1 cut(s)	628
GlaI	GCGC	2 cut(s)	325, 529
GsaI	CCCAGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	4 cut(s)	206, 308, 380, 419
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	2 cut(s)	326, 530
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	418, 580, 616
Hin6I	GCGC	2 cut(s)	324, 528
HinP1I	GCGC	2 cut(s)	324, 528
HinfI	GANTC	3 cut(s)	448, 475, 503
HphI	GGTGA	2 cut(s)	105, 144
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	3 cut(s)	59, 216, 445
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	4 cut(s)	50, 59, 197, 242
HpyAV	CCTTC	4 cut(s)	177, 462, 518, 559
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	39, 296, 571, 593
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 194, 203, 332, 425, 534
HpyF3I	CTNAG	2 cut(s)	479, 501
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	418, 580, 616
HspAI	GCGC	2 cut(s)	324, 528
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	3 cut(s)	4, 584, 609
Lsp1109I	GCAGC	5 cut(s)	21, 280, 352, 445, 554
MaeI	CTAG	1 cut(s)	628
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	111, 310
MalI	GATC	3 cut(s)	6, 586, 611
MbiI	CCGCTC	3 cut(s)	164, 224, 248
MboI	GATC	3 cut(s)	4, 584, 609
MhlI	GDGCHC	1 cut(s)	539
MlyI	GAGTC	3 cut(s)	442, 469, 512
MmeI	TCCRAC	4 cut(s)	37, 239, 275, 562
MnlI	CCTC	8 cut(s)	53, 148, 217, 279, 351, 355, 417, 421
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	598
MspA1I	CMGCKG	1 cut(s)	458
MspR9I	CCNGG	2 cut(s)	465, 510
MvnI	CGCG	2 cut(s)	29, 275
MwoI	GCNNNNNNNGC	6 cut(s)	104, 194, 203, 332, 425, 534
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	2 cut(s)	465, 510
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	3 cut(s)	4, 584, 609
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	3 cut(s)	418, 580, 616
NlaIV	GGNNCC	2 cut(s)	420, 435
NmuCI	GTSAC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	397
PleI	GAGTC	3 cut(s)	442, 469, 511
PpsI	GAGTC	3 cut(s)	442, 469, 511
Psp1406I	AACGTT	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	420, 435
PspPI	GGNCC	2 cut(s)	418, 467
PvuII	CAGCTG	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	598
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	4, 584, 609
Sau96I	GGNCC	2 cut(s)	418, 467
SchI	GAGTC	3 cut(s)	442, 469, 512
ScrFI	CCNGG	2 cut(s)	465, 510
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	8 cut(s)	26, 64, 70, 190, 232, 301, 460, 570
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	598
SspMI	CTAG	1 cut(s)	628
StyD4I	CCNGG	2 cut(s)	463, 508
StyI	CCWWGG	1 cut(s)	414
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	587
TauI	GCSGC	5 cut(s)	164, 224, 245, 248, 383
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	5 cut(s)	9, 293, 365, 458, 542
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	467
XspI	CTAG	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.