Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

11439164 .. 11443654

Gene Structure 4491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGATCGCAAGACTCTGTTCTTCCTAGGTTTTATCTGCATTGTCTTCGCCGGTGTCGGAGGCCAATCTCCCCCCGCCACCTCACCCACCACCACTCCTGCTCCCCCTGCTACACCCACAACTCCGCCACCCAACAACCAGCCACCACCCTCTCCTCCCGCCAGCACTCCACCTCCCGCCGCCACCCCTCCTCCCACGTCAGCTCCACCTCCGGTTGCCACCTCACCGCCCCCAGTTACCACGTCTCCACCTCCATCAACTCCTCCCCCTGTCTCTGCACCCCCGCCGGCCATCCCACCTCCAGTCAGCTCTCCTCCACCCGCAACTCCACCTCCAGCGACCCCCCCACCCGCCACTCCTCCACCTGCAACTCCACCACCAGCCACTCCGCCACCCGCCACTCCGCCACCAGCAACACCACCACCGGCCCCTCTTGCGTCTCCGCCAGCTCAGGTACCAGCTCCAGCTCCCACCGTGACATCTCCAGCCTTGGCGCCTTCTCCTCTCGCACTGGCCCCAGGACCACCGGCGCCACCAGTCGGAGCTCCTACGCCGACCCTGGAGGCCGGTGCTCCGGGACCATCATCTTCAGATGATCAGAGTGGAGTTGAGAAGATGTGGTCGATGCAGAAGATGGTAGGGAACTTCGTGTTTGGGTGGGCACTTCTCAGCTTGATGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

22.07

Weight (kDa)

4.86

Isoelectric Point (pI)

102.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	373
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	3 cut(s)	454, 493, 529
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	573
AcyI	GRCGYC	2 cut(s)	494, 530
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	539
AjiI	CACGTC	2 cut(s)	198, 243
AjnI	CCWGG	2 cut(s)	517, 558
AluBI	AGCT	7 cut(s)	203, 309, 449, 461, 467, 545, 672
AluI	AGCT	7 cut(s)	203, 309, 449, 461, 467, 545, 672
Alw21I	GWGCWC	2 cut(s)	547, 574
Alw26I	GTCTC	3 cut(s)	249, 277, 444
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	5 cut(s)	61, 288, 426, 513, 564
Asp718I	GGTACC	1 cut(s)	454
AspA2I	CCTAGG	1 cut(s)	25
AspLEI	GCGC	2 cut(s)	496, 532
AspS9I	GGNCC	4 cut(s)	427, 514, 521, 578
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	2 cut(s)	75, 216
AvaII	GGWCC	2 cut(s)	521, 578
AvrII	CCTAGG	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	664
BanI	GGYRCC	3 cut(s)	454, 493, 529
BanII	GRGCYC	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	547, 574
BccI	CCATC	4 cut(s)	262, 299, 589, 628
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	2 cut(s)	519, 560
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	576
BcoDI	GTCTC	3 cut(s)	249, 277, 444
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	2 cut(s)	497, 533
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	1 cut(s)	180
BlnI	CCTAGG	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	3 cut(s)	519, 560, 576
Bme18I	GGWCC	2 cut(s)	521, 578
BmgBI	CACGTC	2 cut(s)	198, 243
BmgT120I	GGNCC	4 cut(s)	427, 514, 521, 578
BmiI	GGNNCC	6 cut(s)	429, 456, 495, 516, 531, 579
BmrFI	CCNGG	3 cut(s)	519, 560, 576
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	615, 666
BmuI	ACTGGG	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	5 cut(s)	285, 318, 447, 468, 581
Bpu10I	CCTNAGC	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	576
BsaHI	GRCGYC	2 cut(s)	494, 530
BsaJI	CCNNGG	4 cut(s)	25, 489, 517, 558
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	539
Bse118I	RCCGGY	5 cut(s)	50, 286, 424, 526, 566
Bse1I	ACTGG	4 cut(s)	233, 302, 516, 536
BseBI	CCWGG	2 cut(s)	519, 560
BseDI	CCNNGG	4 cut(s)	25, 489, 517, 558
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	539
BseMII	CTCAG	2 cut(s)	464, 682
BseNI	ACTGG	4 cut(s)	233, 302, 516, 536
BseRI	GAGGAG	6 cut(s)	144, 180, 252, 303, 348, 492
BseSI	GKGCMC	1 cut(s)	664
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	5 cut(s)	63, 290, 428, 515, 566
BshNI	GGYRCC	3 cut(s)	454, 493, 529
BsiHKAI	GWGCWC	2 cut(s)	547, 574
BsiSI	CCGG	7 cut(s)	51, 212, 287, 425, 527, 567, 575
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	539
BsmAI	GTCTC	3 cut(s)	249, 277, 444
BsmBI	CGTCTC	2 cut(s)	249, 444
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	5 cut(s)	63, 290, 428, 515, 566
Bsp1286I	GDGCHC	3 cut(s)	547, 574, 664
Bsp143I	GATC	2 cut(s)	4, 595
BspANI	GGCC	5 cut(s)	63, 290, 428, 515, 566
BspCNI	CTCAG	2 cut(s)	463, 681
BspLI	GGNNCC	6 cut(s)	429, 456, 495, 516, 531, 579
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	3 cut(s)	454, 493, 529
BsrFI	RCCGGY	5 cut(s)	50, 286, 424, 526, 566
BsrI	ACTGG	4 cut(s)	233, 302, 516, 536
BssAI	RCCGGY	5 cut(s)	50, 286, 424, 526, 566
BssECI	CCNNGG	4 cut(s)	25, 489, 517, 558
BssMI	GATC	2 cut(s)	4, 595
BssNI	GRCGYC	2 cut(s)	494, 530
BssT1I	CCWWGG	2 cut(s)	25, 489
Bst2UI	CCWGG	2 cut(s)	519, 560
Bst4CI	ACNGT	1 cut(s)	475
BstACI	GRCGYC	2 cut(s)	494, 530
BstC8I	GCNNGC	3 cut(s)	163, 288, 447
BstDEI	CTNAG	2 cut(s)	450, 668
BstF5I	GGATG	1 cut(s)	291
BstH2I	RGCGCY	2 cut(s)	497, 533
BstHHI	GCGC	2 cut(s)	496, 532
BstKTI	GATC	2 cut(s)	7, 598
BstMAI	GTCTC	3 cut(s)	249, 277, 444
BstMBI	GATC	2 cut(s)	4, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 434
BstNI	CCWGG	2 cut(s)	519, 560
BstSCI	CCNGG	3 cut(s)	517, 558, 574
BstSLI	GKGCMC	1 cut(s)	664
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	5 cut(s)	63, 290, 428, 515, 566
BtrI	CACGTC	2 cut(s)	198, 243
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	509
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	3 cut(s)	163, 288, 447
CfoI	GCGC	2 cut(s)	496, 532
Cfr10I	RCCGGY	5 cut(s)	50, 286, 424, 526, 566
Cfr13I	GGNCC	4 cut(s)	427, 514, 521, 578
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	455
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	2 cut(s)	450, 668
DinI	GGCGCC	2 cut(s)	495, 531
DpnI	GATC	2 cut(s)	6, 597
DpnII	GATC	2 cut(s)	4, 595
EaeI	YGGCCR	1 cut(s)	288
EciI	GGCGGA	4 cut(s)	114, 378, 393, 432
Ecl136II	GAGCTC	1 cut(s)	545
Eco130I	CCWWGG	2 cut(s)	25, 489
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	521, 578
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	573
EcoICRI	GAGCTC	1 cut(s)	545
EcoRII	CCWGG	2 cut(s)	517, 558
EcoT14I	CCWWGG	2 cut(s)	25, 489
EcoT38I	GRGCYC	1 cut(s)	547
EgeI	GGCGCC	2 cut(s)	495, 531
EheI	GGCGCC	2 cut(s)	495, 531
ErhI	CCWWGG	2 cut(s)	25, 489
Esp3I	CGTCTC	2 cut(s)	249, 444
FaqI	GGGAC	1 cut(s)	591
FauI	CCCGC	7 cut(s)	82, 166, 184, 291, 328, 358, 403
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	2 cut(s)	495, 531
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	5 cut(s)	285, 318, 447, 468, 581
HaeII	RGCGCY	2 cut(s)	497, 533
HaeIII	GGCC	5 cut(s)	63, 290, 428, 515, 566
HapII	CCGG	7 cut(s)	51, 212, 287, 425, 527, 567, 575
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	2 cut(s)	496, 532
Hin1I	GRCGYC	2 cut(s)	494, 530
Hin6I	GCGC	2 cut(s)	494, 530
HinP1I	GCGC	2 cut(s)	494, 530
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	7 cut(s)	51, 212, 287, 425, 527, 567, 575
HphI	GGTGA	2 cut(s)	75, 216
Hpy188I	TCNGA	4 cut(s)	59, 542, 592, 600
HpyAV	CCTTC	1 cut(s)	507
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4IV	ACGT	2 cut(s)	197, 242
HpyCH4V	TGCA	4 cut(s)	39, 278, 368, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 434
HpyF3I	CTNAG	2 cut(s)	450, 668
HpySE526I	ACGT	2 cut(s)	197, 242
Hsp92I	GRCGYC	2 cut(s)	494, 530
HspAI	GCGC	2 cut(s)	494, 530
KasI	GGCGCC	2 cut(s)	493, 529
KpnI	GGTACC	1 cut(s)	458
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	4, 595
LmnI	GCTCC	7 cut(s)	106, 208, 466, 472, 542, 550, 577
LweI	GCATC	2 cut(s)	615, 666
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	2 cut(s)	197, 242
MaeIII	GTNAC	2 cut(s)	235, 475
MalI	GATC	2 cut(s)	6, 597
MboI	GATC	2 cut(s)	4, 595
MboII	GAAGA	5 cut(s)	13, 37, 579, 625, 643
MhlI	GDGCHC	3 cut(s)	547, 574, 664
Mly113I	GGCGCC	2 cut(s)	494, 530
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	2 cut(s)	37, 520
MroNI	GCCGGC	1 cut(s)	286
MspI	CCGG	7 cut(s)	51, 212, 287, 425, 527, 567, 575
MspR9I	CCNGG	3 cut(s)	519, 560, 576
MvaI	CCWGG	2 cut(s)	519, 560
MwoI	GCNNNNNNNGC	2 cut(s)	107, 434
NaeI	GCCGGC	1 cut(s)	288
NarI	GGCGCC	2 cut(s)	494, 530
NciI	CCSGG	1 cut(s)	576
NdeII	GATC	2 cut(s)	4, 595
NgoMIV	GCCGGC	1 cut(s)	286
NlaIV	GGNNCC	6 cut(s)	429, 456, 495, 516, 531, 579
NmuCI	GTSAC	1 cut(s)	475
PaqCI	CACCTGC	1 cut(s)	373
PdiI	GCCGGC	1 cut(s)	288
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	7
PluTI	GGCGCC	2 cut(s)	497, 533
PpsI	GAGTC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	547
Psp6I	CCWGG	2 cut(s)	517, 558
PspGI	CCWGG	2 cut(s)	517, 558
PspN4I	GGNNCC	6 cut(s)	429, 456, 495, 516, 531, 579
PspPI	GGNCC	4 cut(s)	427, 514, 521, 578
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SacI	GAGCTC	1 cut(s)	547
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	4, 595
Sau96I	GGNCC	4 cut(s)	427, 514, 521, 578
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	3 cut(s)	519, 560, 576
SduI	GDGCHC	3 cut(s)	547, 574, 664
SfaNI	GCATC	2 cut(s)	615, 666
SfoI	GGCGCC	2 cut(s)	495, 531
SgrAI	CRCCGGYG	2 cut(s)	50, 526
SinI	GGWCC	2 cut(s)	521, 578
SspDI	GGCGCC	2 cut(s)	493, 529
SspMI	CTAG	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	547
StyD4I	CCNGG	3 cut(s)	517, 558, 574
StyI	CCWWGG	2 cut(s)	25, 489
TaaI	ACNGT	1 cut(s)	475
TaiI	ACGT	2 cut(s)	200, 245
TaqI	TCGA	1 cut(s)	623
TauI	GCSGC	1 cut(s)	182
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	475
Tsp45I	GTSAC	1 cut(s)	475
TspRI	CASTG	1 cut(s)	516
VpaK11BI	GGWCC	2 cut(s)	521, 578
XmaJI	CCTAGG	1 cut(s)	25
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.