FvH4_2g04630

Classical arabinogalactan protein 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003772
Physical Location & Seq
Forward (+)
3579675 .. 3581703
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04630.t1

Sequence Viewer

Length: 657 bp
ATGGGTCGCAATGCCTTGTTCTTCCTAGGCTTCCTTTGCGTTGCAATCGCCGGAGGAGTCGGAGGCCAAGCTCCCGCAACCTCACCCACCGCCACACCAGCTCCTCCAACCCCCACTACTCCACCTCCGGTCACCTCATCCCCACCCCCAGCAGCCACCACACCTCCCCCAGTTGCCGCCTCACCACCTCCAGTGACCGCATCTCCACCACCTGCCACTCCTCCTCCAGTGAGCGCACCTCCGCCCGCCACTCCACCTCCGGCAACCCCACCACCAGTCAGCGCTCCCCCACCGGCCACTCCACCACCCGCAACTCCTCCCCCGGCTACTCCACCACCCGCCACTCCACCCCCGGCAACTCCACCACCAGCAACTCCACCTCCGGCCACTCCACCACCAGCTCCTCTTGCATCGCCGCCAGCTTCAGTTCCAGCTCCATCTCCCACGGTGAAGTCTCCGGCTTTGGCTCCATCTCCTCTAGCTCTTTCCCCAGGTCCACCAGCGCCTCCTGTCGGAGCGCCTGGTCCCGGCGGCATCGAGGCAGAATCTCCGGGTCCTTCTCAGTCTGATCAGAGTGGAGTAGAGAAGGTGTGGACAATGCAGAAGATGGTTGGGAGCTTGTTGTTTGGATGGGCTCTTCTCAGCTTGATGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

20.77

Weight (kDa)

6.01

Isoelectric Point (pI)

104.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
Acc36I ACCTGC 1 cut(s) 220
AcoI YGGCCR 2 cut(s) 294, 384
AcuI CTGAAG 1 cut(s) 408
AfeI AGCGCT 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 512, 527
AjnI CCWGG 2 cut(s) 490, 520
AluBI AGCT 8 cut(s) 71, 101, 401, 422, 434, 482, 618, 645
AluI AGCT 8 cut(s) 71, 101, 401, 422, 434, 482, 618, 645
Alw26I GTCTC 1 cut(s) 459
Aor51HI AGCGCT 1 cut(s) 283
AoxI GGCC 3 cut(s) 64, 294, 384
ApeKI GCWGC 1 cut(s) 152
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 4 cut(s) 236, 284, 505, 520
AspS9I GGNCC 3 cut(s) 494, 524, 554
AsuC2I CCSGG 4 cut(s) 323, 353, 528, 552
AsuHPI GGTGA 4 cut(s) 75, 124, 174, 460
AvaII GGWCC 3 cut(s) 494, 524, 554
AvrII CCTAGG 1 cut(s) 25
BanII GRGCYC 1 cut(s) 637
BbvI GCAGC 1 cut(s) 164
BccI CCATC 4 cut(s) 445, 478, 601, 624
BciT130I CCWGG 2 cut(s) 492, 522
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 4 cut(s) 323, 353, 528, 552
BcoDI GTCTC 1 cut(s) 459
BfaI CTAG 2 cut(s) 26, 479
BfoI RGCGCY 3 cut(s) 285, 506, 521
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 4 cut(s) 153, 177, 416, 532
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 4 cut(s) 154, 178, 417, 533
Bme1390I CCNGG 6 cut(s) 323, 353, 492, 522, 528, 552
Bme18I GGWCC 3 cut(s) 494, 524, 554
BmgT120I GGNCC 3 cut(s) 494, 524, 554
BmiI GGNNCC 3 cut(s) 468, 526, 555
BmrFI CCNGG 6 cut(s) 323, 353, 492, 522, 528, 552
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 4 cut(s) 209, 419, 543, 639
BmuI ACTGGG 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 223, 255
BpmI CTGGAG 2 cut(s) 174, 210
BpuMI CCSGG 4 cut(s) 323, 353, 528, 552
BsaJI CCNNGG 5 cut(s) 25, 321, 351, 444, 490
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 527
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 4 cut(s) 170, 191, 227, 275
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 2 cut(s) 492, 522
BseDI CCNNGG 5 cut(s) 25, 321, 351, 444, 490
BseGI GGATG 2 cut(s) 137, 635
BseLI CCNNNNNNNGG 2 cut(s) 512, 527
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 575, 655
BseNI ACTGG 4 cut(s) 170, 191, 227, 275
BseRI GAGGAG 7 cut(s) 69, 93, 210, 213, 306, 393, 465
BseXI GCAGC 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 3 cut(s) 66, 296, 386
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 2 cut(s) 512, 527
BsmAI GTCTC 1 cut(s) 459
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 3 cut(s) 66, 296, 386
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 1 cut(s) 568
BspANI GGCC 3 cut(s) 66, 296, 386
BspCNI CTCAG 2 cut(s) 574, 654
BspLI GGNNCC 3 cut(s) 468, 526, 555
BspMI ACCTGC 1 cut(s) 220
BspQI GCTCTTC 1 cut(s) 642
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 4 cut(s) 170, 191, 227, 275
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 5 cut(s) 25, 321, 351, 444, 490
BssMI GATC 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 2 cut(s) 492, 522
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 642
BstC8I GCNNGC 2 cut(s) 246, 420
BstDEI CTNAG 2 cut(s) 561, 641
BstDSI CCRYGG 1 cut(s) 444
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 2 cut(s) 137, 635
BstH2I RGCGCY 3 cut(s) 285, 506, 521
BstHHI GCGC 4 cut(s) 236, 284, 505, 520
BstKTI GATC 1 cut(s) 571
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 1 cut(s) 568
BstMWI GCNNNNNNNGC 3 cut(s) 36, 98, 407
BstNI CCWGG 2 cut(s) 492, 522
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 6 cut(s) 321, 351, 490, 520, 526, 550
BstV1I GCAGC 1 cut(s) 164
BsuRI GGCC 3 cut(s) 66, 296, 386
BtgI CCRYGG 1 cut(s) 444
BtgZI GCGATG 1 cut(s) 396
BtsCI GGATG 2 cut(s) 137, 635
BtsIMutI CAGTG 2 cut(s) 198, 234
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 246, 420
CfoI GCGC 4 cut(s) 236, 284, 505, 520
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 3 cut(s) 494, 524, 554
DdeI CTNAG 2 cut(s) 561, 641
DpnI GATC 1 cut(s) 570
DpnII GATC 1 cut(s) 568
EaeI YGGCCR 2 cut(s) 294, 384
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
EciI GGCGGA 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 637
Eco47I GGWCC 3 cut(s) 494, 524, 554
Eco47III AGCGCT 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 408
Eco91I GGTNACC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 554
EcoO65I GGTNACC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 490, 520
EcoT14I CCWWGG 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 25
FaqI GGGAC 1 cut(s) 510
FauI CCCGC 4 cut(s) 82, 253, 316, 346
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 4 cut(s) 153, 177, 416, 532
FokI GGATG 2 cut(s) 124, 642
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 4 cut(s) 153, 177, 416, 532
FspBI CTAG 2 cut(s) 26, 479
GlaI GCGC 4 cut(s) 235, 283, 504, 519
GluI GCNGC 4 cut(s) 153, 177, 416, 532
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 2 cut(s) 174, 210
HaeII RGCGCY 3 cut(s) 285, 506, 521
HaeIII GGCC 3 cut(s) 66, 296, 386
HhaI GCGC 4 cut(s) 236, 284, 505, 520
Hin6I GCGC 4 cut(s) 234, 282, 503, 518
HinP1I GCGC 4 cut(s) 234, 282, 503, 518
HinfI GANTC 2 cut(s) 57, 545
HphI GGTGA 4 cut(s) 75, 124, 174, 460
Hpy166II GTNNAC 2 cut(s) 497, 594
Hpy188I TCNGA 4 cut(s) 62, 515, 568, 573
Hpy8I GTNNAC 2 cut(s) 497, 594
HpyAV CCTTC 2 cut(s) 567, 580
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4V TGCA 3 cut(s) 44, 410, 601
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 98, 407
HpyF3I CTNAG 2 cut(s) 561, 641
HspAI GCGC 4 cut(s) 234, 282, 503, 518
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 1 cut(s) 568
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 8 cut(s) 76, 106, 289, 406, 439, 472, 515, 615
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 4 cut(s) 209, 419, 543, 639
MaeI CTAG 2 cut(s) 26, 479
MaeIII GTNAC 2 cut(s) 130, 193
MalI GATC 1 cut(s) 570
MboI GATC 1 cut(s) 568
MboII GAAGA 3 cut(s) 13, 616, 629
MhlI GDGCHC 1 cut(s) 637
MlyI GAGTC 1 cut(s) 66
MmeI TCCRAC 3 cut(s) 40, 131, 493
MspR9I CCNGG 6 cut(s) 323, 353, 492, 522, 528, 552
MvaI CCWGG 2 cut(s) 492, 522
MwoI GCNNNNNNNGC 3 cut(s) 36, 98, 407
NciI CCSGG 4 cut(s) 323, 353, 528, 552
NdeII GATC 1 cut(s) 568
NlaIV GGNNCC 3 cut(s) 468, 526, 555
NmuCI GTSAC 2 cut(s) 130, 193
PaqCI CACCTGC 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 642
PfeI GAWTC 1 cut(s) 545
PkrI GCNGC 4 cut(s) 154, 178, 417, 533
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 554
Psp6I CCWGG 2 cut(s) 490, 520
PspEI GGTNACC 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 2 cut(s) 490, 520
PspN4I GGNNCC 3 cut(s) 468, 526, 555
PspPI GGNCC 3 cut(s) 494, 524, 554
PspPPI RGGWCCY 1 cut(s) 554
SapI GCTCTTC 1 cut(s) 642
SatI GCNGC 4 cut(s) 153, 177, 416, 532
Sau3AI GATC 1 cut(s) 568
Sau96I GGNCC 3 cut(s) 494, 524, 554
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 6 cut(s) 323, 353, 492, 522, 528, 552
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 4 cut(s) 209, 419, 543, 639
SinI GGWCC 3 cut(s) 494, 524, 554
SspMI CTAG 2 cut(s) 26, 479
StyD4I CCNGG 6 cut(s) 321, 351, 490, 520, 526, 550
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 448
TaqI TCGA 1 cut(s) 537
TauI GCSGC 3 cut(s) 179, 418, 534
TfiI GAWTC 1 cut(s) 545
TscAI CASTG 2 cut(s) 198, 234
TseFI GTSAC 2 cut(s) 130, 193
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 2 cut(s) 130, 193
TspRI CASTG 2 cut(s) 198, 234
VpaK11BI GGWCC 3 cut(s) 494, 524, 554
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 2 cut(s) 26, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.