Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

16254372 .. 16256105

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1181000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGCGGAACAACATCTTCACCATCGCACTCATCTGCCTTCTTGTCGCCGGCGTCGGAGGCCAGGCTCCATCCGCCGCACCCACTACAACTCCTGCCACTCCATCCGCCATCCCTCCAGCTATTACACCAGCTGCAGCTCCTCAGCCCAAGTCACCATCTCCAGTTGCCACCCCCAAACCTGCTCCCACTCCGGTGTCGGCTCCACCCAAGCCCGCCGCTGCTCCAACTCCGGCGGCCACTCCTCCTACCGCTACCGTCTCACCCCCATTGCCATCTCCAGTGAGCTCCCCAACGGCTAAGGCTCCGGTCAGCTCCCCACCGGCTAAGGCTCCGGTCAGCTCCCCACCACTGGCCACATCTCCTCCGTCAGCCACCCCTGCTCCCGCAGCTGAGGCACCCACTACTACTGAGGTCCCTTCCCCGGCTCCCAGCAAGAAGTCGAAGCACAAGTCTCCGGCGGCTGCTCCGACTCCGGATACTGCCAGCCCACCGGCGCCGGAGGGACCGTCATCGAGCCCTGATGCTTCGTCTCCTAGTCCTTCAACTGCAGCTGACGACCAGAGTGGTGCAATGACGATCAGGTCCCTCAAGGTGATGGGATCCATGGCATTGGGATGGGCAGTATTGGCATTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

20.5

Weight (kDa)

9.42

Isoelectric Point (pI)

98.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	583
Acc36I	ACCTGC	1 cut(s)	190
AccB1I	GGYRCC	2 cut(s)	397, 496
AccBSI	CCGCTC	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	475
AclWI	GGATC	2 cut(s)	597, 610
AcoI	YGGCCR	2 cut(s)	237, 354
AcyI	GRCGYC	2 cut(s)	54, 497
AfiI	CCNNNNNNNGG	2 cut(s)	352, 424
AgsI	TTSAA	1 cut(s)	546
AjnI	CCWGG	1 cut(s)	63
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	8 cut(s)	122, 134, 140, 288, 315, 342, 392, 554
AluI	AGCT	8 cut(s)	122, 134, 140, 288, 315, 342, 392, 554
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	3 cut(s)	265, 459, 537
AlwI	GGATC	2 cut(s)	597, 610
Aor13HI	TCCGGA	1 cut(s)	475
AoxI	GGCC	3 cut(s)	61, 237, 354
ApeKI	GCWGC	6 cut(s)	134, 137, 221, 389, 464, 551
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	3 cut(s)	415, 506, 585
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	4 cut(s)	13, 147, 255, 607
AvaII	GGWCC	3 cut(s)	415, 506, 585
BalI	TGGCCA	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	602
BanI	GGYRCC	2 cut(s)	397, 496
BanII	GRGCYC	2 cut(s)	290, 521
Bbv12I	GWGCWC	1 cut(s)	290
BbvCI	CCTCAGC	2 cut(s)	144, 393
BbvI	GCAGC	6 cut(s)	121, 149, 208, 401, 451, 563
BccI	CCATC	8 cut(s)	32, 79, 112, 119, 166, 283, 592, 612
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	3 cut(s)	265, 459, 537
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	2 cut(s)	135, 549
BfoI	RGCGCY	1 cut(s)	500
BfuAI	ACCTGC	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	472
Bme1390I	CCNGG	2 cut(s)	65, 425
Bme18I	GGWCC	3 cut(s)	415, 506, 585
BmgT120I	GGNCC	3 cut(s)	415, 506, 585
BmrFI	CCNGG	2 cut(s)	65, 425
BmsI	GCATC	1 cut(s)	514
BpmI	CTGGAG	3 cut(s)	102, 147, 264
Bpu10I	CCTNAGC	4 cut(s)	144, 300, 327, 393
BpuEI	CTTGAG	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	425
BsaHI	GRCGYC	2 cut(s)	54, 497
BsaJI	CCNNGG	2 cut(s)	423, 606
BsaWI	WCCGGW	4 cut(s)	193, 307, 334, 475
BsaXI	ACNNNNNCTCC	8 cut(s)	76, 106, 349, 367, 379, 397, 494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 424
Bse118I	RCCGGY	3 cut(s)	50, 322, 493
Bse1I	ACTGG	3 cut(s)	164, 281, 357
Bse3DI	GCAATG	2 cut(s)	269, 579
BseAI	TCCGGA	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	423, 606
BseGI	GGATG	4 cut(s)	71, 104, 111, 623
BseLI	CCNNNNNNNGG	2 cut(s)	352, 424
BseMI	GCAATG	2 cut(s)	269, 579
BseMII	CTCAG	3 cut(s)	158, 384, 402
BseNI	ACTGG	3 cut(s)	164, 281, 357
BseRI	GAGGAG	3 cut(s)	132, 234, 354
BseXI	GCAGC	6 cut(s)	121, 149, 208, 401, 451, 563
BseYI	CCCAGC	1 cut(s)	431
BshFI	GGCC	3 cut(s)	63, 239, 356
BshNI	GGYRCC	2 cut(s)	397, 496
BsiHKAI	GWGCWC	1 cut(s)	290
BslFI	GGGAC	3 cut(s)	401, 519, 571
BslI	CCNNNNNNNGG	2 cut(s)	352, 424
BsmAI	GTCTC	3 cut(s)	265, 459, 537
BsmBI	CGTCTC	2 cut(s)	265, 537
BsmFI	GGGAC	3 cut(s)	401, 519, 571
BsnI	GGCC	3 cut(s)	63, 239, 356
Bsp1286I	GDGCHC	2 cut(s)	290, 521
Bsp13I	TCCGGA	1 cut(s)	475
Bsp143I	GATC	2 cut(s)	579, 602
Bsp19I	CCATGG	1 cut(s)	606
BspANI	GGCC	3 cut(s)	63, 239, 356
BspCNI	CTCAG	3 cut(s)	157, 385, 403
BspEI	TCCGGA	1 cut(s)	475
BspMAI	CTGCAG	2 cut(s)	139, 553
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	597, 610
BspT107I	GGYRCC	2 cut(s)	397, 496
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	2 cut(s)	269, 579
BsrFI	RCCGGY	3 cut(s)	50, 322, 493
BsrI	ACTGG	3 cut(s)	164, 281, 357
BssAI	RCCGGY	3 cut(s)	50, 322, 493
BssECI	CCNNGG	2 cut(s)	423, 606
BssMI	GATC	2 cut(s)	579, 602
BssNI	GRCGYC	2 cut(s)	54, 497
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	259, 510
BstACI	GRCGYC	2 cut(s)	54, 497
BstC8I	GCNNGC	3 cut(s)	52, 216, 487
BstDEI	CTNAG	5 cut(s)	144, 300, 327, 393, 411
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	4 cut(s)	71, 104, 111, 623
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	2 cut(s)	582, 605
BstMAI	GTCTC	3 cut(s)	265, 459, 537
BstMBI	GATC	2 cut(s)	579, 602
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 74, 380, 389, 395, 629
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	63, 423
BstSFI	CTRYAG	2 cut(s)	135, 549
BstV1I	GCAGC	6 cut(s)	121, 149, 208, 401, 451, 563
BstX2I	RGATCY	1 cut(s)	602
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	602
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	3 cut(s)	63, 239, 356
BtgI	CCRYGG	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	10
BtsCI	GGATG	4 cut(s)	71, 104, 111, 623
BtsIMutI	CAGTG	2 cut(s)	288, 350
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	52, 216, 487
CfoI	GCGC	1 cut(s)	499
Cfr10I	RCCGGY	3 cut(s)	50, 322, 493
Cfr13I	GGNCC	3 cut(s)	415, 506, 585
CseI	GACGC	1 cut(s)	43
CviAII	CATG	1 cut(s)	607
DdeI	CTNAG	5 cut(s)	144, 300, 327, 393, 411
DinI	GGCGCC	1 cut(s)	498
DpnI	GATC	2 cut(s)	581, 604
DpnII	GATC	2 cut(s)	579, 602
DrdI	GACNNNNNNGTC	1 cut(s)	583
DseDI	GACNNNNNNGTC	1 cut(s)	583
EaeI	YGGCCR	2 cut(s)	237, 354
EciI	GGCGGA	2 cut(s)	64, 97
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	2 cut(s)	290, 521
Eco47I	GGWCC	3 cut(s)	415, 506, 585
Eco53kI	GAGCTC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	288
EcoO109I	RGGNCCY	2 cut(s)	415, 585
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	2 cut(s)	290, 521
EgeI	GGCGCC	1 cut(s)	498
EheI	GGCGCC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	606
Esp3I	CGTCTC	2 cut(s)	265, 537
FaeI	CATG	1 cut(s)	610
FaiI	YATR	2 cut(s)	608, 637
FaqI	GGGAC	3 cut(s)	401, 519, 571
FatI	CATG	1 cut(s)	606
FauI	CCCGC	2 cut(s)	223, 394
FokI	GGATG	4 cut(s)	58, 91, 98, 630
FriOI	GRGCYC	2 cut(s)	290, 521
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	1 cut(s)	498
GsaI	CCCAGC	1 cut(s)	435
GsuI	CTGGAG	3 cut(s)	102, 147, 264
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	3 cut(s)	63, 239, 356
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	499
Hin1I	GRCGYC	2 cut(s)	54, 497
Hin1II	CATG	1 cut(s)	610
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HinfI	GANTC	1 cut(s)	472
HphI	GGTGA	4 cut(s)	13, 147, 255, 607
Hpy188I	TCNGA	2 cut(s)	59, 471
Hpy188III	TCNNGA	1 cut(s)	476
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	50, 429, 552
HpyCH4III	ACNGT	2 cut(s)	259, 510
HpyCH4V	TGCA	3 cut(s)	137, 551, 572
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 74, 380, 389, 395, 629
HpyF3I	CTNAG	5 cut(s)	144, 300, 327, 393, 411
Hsp92I	GRCGYC	2 cut(s)	54, 497
Hsp92II	CATG	1 cut(s)	610
HspAI	GCGC	1 cut(s)	497
KasI	GGCGCC	1 cut(s)	496
Kpn2I	TCCGGA	1 cut(s)	475
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	579, 602
Lsp1109I	GCAGC	6 cut(s)	121, 149, 208, 401, 451, 563
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	2 cut(s)	581, 604
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	2 cut(s)	579, 602
MboII	GAAGA	1 cut(s)	10
MflI	RGATCY	1 cut(s)	602
MhlI	GDGCHC	2 cut(s)	290, 521
MlsI	TGGCCA	1 cut(s)	356
MluNI	TGGCCA	1 cut(s)	356
Mly113I	GGCGCC	1 cut(s)	497
MlyI	GAGTC	1 cut(s)	466
MmeI	TCCRAC	3 cut(s)	37, 251, 494
MnlI	CCTC	9 cut(s)	53, 126, 153, 255, 375, 388, 406, 496, 599
Mox20I	TGGCCA	1 cut(s)	356
MreI	CGCCGGCG	1 cut(s)	50
MroI	TCCGGA	1 cut(s)	475
MroNI	GCCGGC	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	1 cut(s)	640
MslI	CAYNNNNRTG	2 cut(s)	194, 616
Msp20I	TGGCCA	1 cut(s)	356
MspA1I	CMGCKG	4 cut(s)	134, 221, 392, 554
MspR9I	CCNGG	2 cut(s)	65, 425
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	6 cut(s)	60, 74, 380, 389, 395, 629
NaeI	GCCGGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	497
NciI	CCSGG	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	2 cut(s)	579, 602
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	153
OliI	CACNNNNGTG	1 cut(s)	194
PdiI	GCCGGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	466
PluTI	GGCGCC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	466
PpuMI	RGGWCCY	2 cut(s)	415, 585
Psp124BI	GAGCTC	1 cut(s)	290
Psp5II	RGGWCCY	2 cut(s)	415, 585
Psp6I	CCWGG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	63
PspPI	GGNCC	3 cut(s)	415, 506, 585
PspPPI	RGGWCCY	2 cut(s)	415, 585
PstI	CTGCAG	2 cut(s)	139, 553
PsuI	RGATCY	1 cut(s)	602
PvuII	CAGCTG	3 cut(s)	134, 392, 554
RseI	CAYNNNNRTG	2 cut(s)	194, 616
SacI	GAGCTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	640
Sau3AI	GATC	2 cut(s)	579, 602
Sau96I	GGNCC	3 cut(s)	415, 506, 585
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	2 cut(s)	65, 425
SduI	GDGCHC	2 cut(s)	290, 521
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	2 cut(s)	135, 549
SfoI	GGCGCC	1 cut(s)	498
SgrAI	CRCCGGYG	2 cut(s)	50, 493
SinI	GGWCC	3 cut(s)	415, 506, 585
SmiMI	CAYNNNNRTG	2 cut(s)	194, 616
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
SspDI	GGCGCC	1 cut(s)	496
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	63, 423
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	259, 510
TaqI	TCGA	2 cut(s)	443, 515
TauI	GCSGC	4 cut(s)	80, 221, 239, 464
Tru1I	TTAA	1 cut(s)	640
Tru9I	TTAA	1 cut(s)	640
TscAI	CASTG	2 cut(s)	288, 357
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	6 cut(s)	134, 137, 221, 389, 464, 551
Tsp45I	GTSAC	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	288, 357
VpaK11BI	GGWCC	3 cut(s)	415, 506, 585
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.