Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

11270164 .. 11271766

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTACATAAACTCTCGTCAAGACTATTACATTCTCACTCTCTCTCTCTCTAAACATTTCTATCTAAATCCTGCGATAGCAAATCTGATAGAGATGGAGCGGAACAACATCTTCACCATCGCACTCATCTGCCTTCTTGTCGCCGGCGTCGGAGGCCAGGCTCCATCCGCCGCACCCACTACAACTCCGGCCACTCCATCCGCCACCCCTCCAGCTATTACACCAGCTGCAGCTCCTCAGCCCAAGTCACCATCTCCAGTTGCCACCCCCAAATCTGCTCCCACTCCGGCGTCGGCTCCACCCAAGCCCGCCGCTGCTCCAACTCCGGCGGCCACTCCTCCTACCGCTACCGTCTCACCCCCATTGCCGTCTCCAGTGAGCTCCCCACCGGCTAAGGCTCCGGTTAGCTCCCCACCACTGGCTACATCTCCTCCGCCAGCCACCCCTGCTCCCGCAGCTGAGGCACCCACTACTACTGAGGTCCCTTCTCCGGCTCCCAGCAAGAAGTCGAAGCACAAATCTCCTGCGGCTGCTCCGACTCCGGATACTGCCAGCCCACCGGCGCCGGAGGGACCTGCATTGAGCCCTGAAGCTTCGTCTCCTGGTCCTTCAACTGCAGCTGACGACCAGAGTGGTGCAATGACGATCAGGTCCCTCAAGGTGATGGGATCCATGGCATTGGGATGGGCAGTATTGGCATTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

23.3

Weight (kDa)

9.04

Isoelectric Point (pI)

91.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	649
Acc36I	ACCTGC	1 cut(s)	583
AccB1I	GGYRCC	2 cut(s)	463, 562
AccBSI	CCGCTC	1 cut(s)	100
AccIII	TCCGGA	1 cut(s)	541
AclWI	GGATC	2 cut(s)	663, 676
AcoI	YGGCCR	2 cut(s)	189, 330
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	3 cut(s)	147, 290, 563
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	418, 490
AgsI	TTSAA	1 cut(s)	612
AjnI	CCWGG	2 cut(s)	156, 601
AluBI	AGCT	8 cut(s)	215, 227, 233, 381, 408, 458, 593, 620
AluI	AGCT	8 cut(s)	215, 227, 233, 381, 408, 458, 593, 620
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	3 cut(s)	358, 375, 603
AlwI	GGATC	2 cut(s)	663, 676
Aor13HI	TCCGGA	1 cut(s)	541
AoxI	GGCC	3 cut(s)	154, 189, 330
ApeKI	GCWGC	6 cut(s)	227, 230, 314, 455, 530, 617
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	4 cut(s)	481, 572, 605, 651
AsuHPI	GGTGA	4 cut(s)	106, 240, 348, 673
AvaII	GGWCC	4 cut(s)	481, 572, 605, 651
BamHI	GGATCC	1 cut(s)	668
BanI	GGYRCC	2 cut(s)	463, 562
BanII	GRGCYC	2 cut(s)	383, 587
Bbv12I	GWGCWC	1 cut(s)	383
BbvCI	CCTCAGC	2 cut(s)	237, 459
BbvI	GCAGC	6 cut(s)	214, 242, 301, 467, 517, 629
BccI	CCATC	7 cut(s)	88, 125, 172, 205, 259, 658, 678
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	2 cut(s)	158, 603
BciVI	GTATCC	1 cut(s)	538
BcoDI	GTCTC	3 cut(s)	358, 375, 603
BfmI	CTRYAG	2 cut(s)	228, 615
BfoI	RGCGCY	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	583
BfuI	GTATCC	1 cut(s)	538
Bme1390I	CCNGG	2 cut(s)	158, 603
Bme18I	GGWCC	4 cut(s)	481, 572, 605, 651
BmgT120I	GGNCC	4 cut(s)	481, 572, 605, 651
BmrFI	CCNGG	2 cut(s)	158, 603
BpmI	CTGGAG	3 cut(s)	195, 240, 357
Bpu10I	CCTNAGC	3 cut(s)	237, 393, 459
BpuEI	CTTGAG	1 cut(s)	641
BsaHI	GRCGYC	3 cut(s)	147, 290, 563
BsaJI	CCNNGG	1 cut(s)	672
BsaWI	WCCGGW	2 cut(s)	400, 541
BsaXI	ACNNNNNCTCC	6 cut(s)	169, 199, 415, 433, 445, 463
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 490
Bse118I	RCCGGY	3 cut(s)	143, 388, 559
Bse1I	ACTGG	3 cut(s)	257, 374, 423
Bse3DI	GCAATG	2 cut(s)	362, 645
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	2 cut(s)	158, 603
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	3 cut(s)	164, 197, 689
BseLI	CCNNNNNNNGG	2 cut(s)	418, 490
BseMI	GCAATG	2 cut(s)	362, 645
BseMII	CTCAG	3 cut(s)	251, 450, 468
BseNI	ACTGG	3 cut(s)	257, 374, 423
BseRI	GAGGAG	3 cut(s)	225, 327, 420
BseXI	GCAGC	6 cut(s)	214, 242, 301, 467, 517, 629
BseYI	CCCAGC	1 cut(s)	497
BshFI	GGCC	3 cut(s)	156, 191, 332
BshNI	GGYRCC	2 cut(s)	463, 562
BsiHKAI	GWGCWC	1 cut(s)	383
BslFI	GGGAC	3 cut(s)	467, 585, 637
BslI	CCNNNNNNNGG	2 cut(s)	418, 490
BsmAI	GTCTC	3 cut(s)	358, 375, 603
BsmBI	CGTCTC	3 cut(s)	358, 375, 603
BsmFI	GGGAC	3 cut(s)	467, 585, 637
BsnI	GGCC	3 cut(s)	156, 191, 332
Bsp1286I	GDGCHC	2 cut(s)	383, 587
Bsp13I	TCCGGA	1 cut(s)	541
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	645, 668
Bsp19I	CCATGG	1 cut(s)	672
BspANI	GGCC	3 cut(s)	156, 191, 332
BspCNI	CTCAG	3 cut(s)	250, 451, 469
BspEI	TCCGGA	1 cut(s)	541
BspMAI	CTGCAG	2 cut(s)	232, 619
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	2 cut(s)	663, 676
BspT107I	GGYRCC	2 cut(s)	463, 562
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	2 cut(s)	362, 645
BsrFI	RCCGGY	3 cut(s)	143, 388, 559
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	257, 374, 423
BssAI	RCCGGY	3 cut(s)	143, 388, 559
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	2 cut(s)	645, 668
BssNI	GRCGYC	3 cut(s)	147, 290, 563
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	2 cut(s)	158, 603
Bst4CI	ACNGT	1 cut(s)	352
BstACI	GRCGYC	3 cut(s)	147, 290, 563
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	4 cut(s)	145, 309, 438, 553
BstDEI	CTNAG	4 cut(s)	237, 393, 459, 477
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	3 cut(s)	164, 197, 689
BstH2I	RGCGCY	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	2 cut(s)	648, 671
BstMAI	GTCTC	3 cut(s)	358, 375, 603
BstMBI	GATC	2 cut(s)	645, 668
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 167, 446, 455, 461, 695
BstNI	CCWGG	2 cut(s)	158, 603
BstSCI	CCNGG	2 cut(s)	156, 601
BstSFI	CTRYAG	2 cut(s)	228, 615
BstV1I	GCAGC	6 cut(s)	214, 242, 301, 467, 517, 629
BstX2I	RGATCY	1 cut(s)	668
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	668
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	3 cut(s)	156, 191, 332
BtgI	CCRYGG	1 cut(s)	672
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	164, 197, 689
BtsIMutI	CAGTG	2 cut(s)	381, 416
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	4 cut(s)	145, 309, 438, 553
CfoI	GCGC	1 cut(s)	565
Cfr10I	RCCGGY	3 cut(s)	143, 388, 559
Cfr13I	GGNCC	4 cut(s)	481, 572, 605, 651
CseI	GACGC	2 cut(s)	136, 279
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	673
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	237, 393, 459, 477
DinI	GGCGCC	1 cut(s)	564
DpnI	GATC	2 cut(s)	647, 670
DpnII	GATC	2 cut(s)	645, 668
DrdI	GACNNNNNNGTC	1 cut(s)	649
DseDI	GACNNNNNNGTC	1 cut(s)	649
EaeI	YGGCCR	2 cut(s)	189, 330
EciI	GGCGGA	3 cut(s)	157, 190, 423
Ecl136II	GAGCTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	672
Eco24I	GRGCYC	2 cut(s)	383, 587
Eco47I	GGWCC	4 cut(s)	481, 572, 605, 651
Eco53kI	GAGCTC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	381
EcoO109I	RGGNCCY	3 cut(s)	481, 572, 651
EcoRII	CCWGG	2 cut(s)	156, 601
EcoT14I	CCWWGG	1 cut(s)	672
EcoT38I	GRGCYC	2 cut(s)	383, 587
EgeI	GGCGCC	1 cut(s)	564
EheI	GGCGCC	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	672
Esp3I	CGTCTC	3 cut(s)	358, 375, 603
FaeI	CATG	1 cut(s)	676
FaiI	YATR	3 cut(s)	8, 674, 703
FaqI	GGGAC	3 cut(s)	467, 585, 637
FatI	CATG	1 cut(s)	672
FauI	CCCGC	2 cut(s)	316, 460
FokI	GGATG	3 cut(s)	151, 184, 696
FriOI	GRGCYC	2 cut(s)	383, 587
GlaI	GCGC	1 cut(s)	564
GsaI	CCCAGC	1 cut(s)	501
GsuI	CTGGAG	3 cut(s)	195, 240, 357
HaeII	RGCGCY	1 cut(s)	566
HaeIII	GGCC	3 cut(s)	156, 191, 332
HgaI	GACGC	2 cut(s)	136, 279
HhaI	GCGC	1 cut(s)	565
Hin1I	GRCGYC	3 cut(s)	147, 290, 563
Hin1II	CATG	1 cut(s)	676
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	1 cut(s)	538
HphI	GGTGA	4 cut(s)	106, 240, 348, 673
Hpy188I	TCNGA	3 cut(s)	87, 152, 537
Hpy188III	TCNNGA	2 cut(s)	20, 542
Hpy99I	CGWCG	2 cut(s)	152, 295
HpyAV	CCTTC	3 cut(s)	143, 495, 618
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	4 cut(s)	230, 578, 617, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 167, 446, 455, 461, 695
HpyF3I	CTNAG	4 cut(s)	237, 393, 459, 477
Hsp92I	GRCGYC	3 cut(s)	147, 290, 563
Hsp92II	CATG	1 cut(s)	676
HspAI	GCGC	1 cut(s)	563
KasI	GGCGCC	1 cut(s)	562
Kpn2I	TCCGGA	1 cut(s)	541
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	645, 668
Lsp1109I	GCAGC	6 cut(s)	214, 242, 301, 467, 517, 629
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	647, 670
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	2 cut(s)	645, 668
MboII	GAAGA	1 cut(s)	103
MflI	RGATCY	1 cut(s)	668
MhlI	GDGCHC	2 cut(s)	383, 587
Mly113I	GGCGCC	1 cut(s)	563
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	3 cut(s)	130, 344, 560
MnlI	CCTC	9 cut(s)	146, 219, 246, 348, 441, 454, 472, 562, 665
MreI	CGCCGGCG	1 cut(s)	143
MroI	TCCGGA	1 cut(s)	541
MroNI	GCCGGC	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	682
MspA1I	CMGCKG	4 cut(s)	227, 314, 458, 620
MspR9I	CCNGG	2 cut(s)	158, 603
MvaI	CCWGG	2 cut(s)	158, 603
MwoI	GCNNNNNNNGC	6 cut(s)	153, 167, 446, 455, 461, 695
NaeI	GCCGGC	1 cut(s)	145
NarI	GGCGCC	1 cut(s)	563
NcoI	CCATGG	1 cut(s)	672
NdeII	GATC	2 cut(s)	645, 668
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	676
NmuCI	GTSAC	1 cut(s)	246
PdiI	GCCGGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	532
PluTI	GGCGCC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	532
PpuMI	RGGWCCY	3 cut(s)	481, 572, 651
Psp124BI	GAGCTC	1 cut(s)	383
Psp5II	RGGWCCY	3 cut(s)	481, 572, 651
Psp6I	CCWGG	2 cut(s)	156, 601
PspFI	CCCAGC	1 cut(s)	497
PspGI	CCWGG	2 cut(s)	156, 601
PspPI	GGNCC	4 cut(s)	481, 572, 605, 651
PspPPI	RGGWCCY	3 cut(s)	481, 572, 651
PstI	CTGCAG	2 cut(s)	232, 619
PsuI	RGATCY	1 cut(s)	668
PvuII	CAGCTG	3 cut(s)	227, 458, 620
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	682
SacI	GAGCTC	1 cut(s)	383
Sau3AI	GATC	2 cut(s)	645, 668
Sau96I	GGNCC	4 cut(s)	481, 572, 605, 651
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	2 cut(s)	158, 603
SduI	GDGCHC	2 cut(s)	383, 587
SfcI	CTRYAG	2 cut(s)	228, 615
SfoI	GGCGCC	1 cut(s)	564
SgrAI	CRCCGGYG	2 cut(s)	143, 559
SinI	GGWCC	4 cut(s)	481, 572, 605, 651
SmiMI	CAYNNNNRTG	1 cut(s)	682
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SspDI	GGCGCC	1 cut(s)	562
SstI	GAGCTC	1 cut(s)	383
StyD4I	CCNGG	2 cut(s)	156, 601
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	509
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	4 cut(s)	173, 314, 332, 530
TscAI	CASTG	2 cut(s)	381, 423
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	6 cut(s)	227, 230, 314, 455, 530, 617
Tsp45I	GTSAC	1 cut(s)	246
TspRI	CASTG	2 cut(s)	381, 423
VpaK11BI	GGWCC	4 cut(s)	481, 572, 605, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.