AT2G28690

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002977
Physical Location & Seq
Reverse (-)
12306885 .. 12308643
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28690.1

Sequence Viewer

Length: 696 bp
ATGGAAGAGTTGGGTTCTATTTGGTTTTACCAAGAGAGTATGGATGAATTAAGACAAAAGCTTCAATATAGTTCCTTTGAACTCGAAGCCGTGAAAGCAAAAGCTAATGAAGAAACAAAACTTCACCAAGAAGAAGTGAAGAATCTTCTTCATCTTCTCAAACTTGCTCGTCAAGAAAGAGACGAAGCTAAAGATCAATTACAAAAACTTCTCACAATCAAAACAAATTCAAGCATAACCGAGTCAAACTCTCACGGTTCTTCACCGGTTGACTCGTTCTTCGAACCGGTCTCATCCTCGGAATTCTCCAATTTCAACATGGTACCTGAACCGATTAACCAAGTCAAATTCAAGAACCGACAACAACTCGTTAACCGGAACTTGAAGAAGATTGATCCTGTGGATGCTCTAATGGATGAGATCATAAAAGGTAAAGCTTTACCGGAGAAAGGGAAGCTTCTTCAAACTGTGATGGAATCTGGACCGTTGCTTCAAACACTTCTTGTTGCTGGTCCACTTCCACGGTGGCGTAATCCTCCCCCGCTTCAACAGAGCTTTAGAGTCCCTCCGATCTCTAACTCTTACGGTTGTTTACCGGCGACGACAACGACTTCAATGCTGAATTTTAGAGGTTGCTCTGTTCCTAGAATTGCTACCGGAATTGAAGTTGCAACTAAACGACAACGATTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

231

Amino Acids

26.23

Weight (kDa)

8.8

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 12 - 230 2.3e-65 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 322
AccB1I GGYRCC 1 cut(s) 322
AciI CCGC 1 cut(s) 542
AclWI GGATC 1 cut(s) 389
AcsI RAATTY 4 cut(s) 226, 302, 347, 622
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 449
AgeI ACCGGT 2 cut(s) 265, 286
AluBI AGCT 6 cut(s) 61, 104, 188, 437, 457, 555
AluI AGCT 6 cut(s) 61, 104, 188, 437, 457, 555
Alw26I GTCTC 2 cut(s) 174, 295
AlwI GGATC 1 cut(s) 389
ApoI RAATTY 4 cut(s) 226, 302, 347, 622
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AsiGI ACCGGT 2 cut(s) 265, 286
Asp718I GGTACC 1 cut(s) 322
AspS9I GGNCC 2 cut(s) 482, 512
AsuHPI GGTGA 2 cut(s) 116, 255
AsuII TTCGAA 1 cut(s) 282
AvaII GGWCC 2 cut(s) 482, 512
BanI GGYRCC 1 cut(s) 322
BccI CCATC 1 cut(s) 466
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BcoDI GTCTC 2 cut(s) 174, 295
BfaI CTAG 1 cut(s) 645
Bme18I GGWCC 2 cut(s) 482, 512
BmgT120I GGNCC 2 cut(s) 482, 512
BmiI GGNNCC 1 cut(s) 324
BmsI GCATC 1 cut(s) 394
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bpu14I TTCGAA 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 297, 521
BsaWI WCCGGW 5 cut(s) 265, 286, 375, 442, 656
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 3 cut(s) 265, 286, 595
BseDI CCNNGG 2 cut(s) 297, 521
BseGI GGATG 4 cut(s) 49, 293, 409, 421
BseLI CCNNNNNNNGG 1 cut(s) 449
BshNI GGYRCC 1 cut(s) 322
BshTI ACCGGT 2 cut(s) 265, 286
BsiSI CCGG 6 cut(s) 266, 287, 376, 443, 596, 657
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 2 cut(s) 174, 295
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 548
Bso31I GGTCTC 1 cut(s) 295
Bsp119I TTCGAA 1 cut(s) 282
Bsp143I GATC 4 cut(s) 193, 394, 420, 570
BspACI CCGC 1 cut(s) 542
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 1 cut(s) 389
BspT104I TTCGAA 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 295
BsrFI RCCGGY 3 cut(s) 265, 286, 595
BssAI RCCGGY 3 cut(s) 265, 286, 595
BssECI CCNNGG 2 cut(s) 297, 521
BssMI GATC 4 cut(s) 193, 394, 420, 570
Bst4CI ACNGT 5 cut(s) 257, 469, 486, 525, 587
BstBI TTCGAA 1 cut(s) 282
BstDSI CCRYGG 1 cut(s) 521
BstF5I GGATG 4 cut(s) 49, 293, 409, 421
BstKTI GATC 4 cut(s) 196, 397, 423, 573
BstMAI GTCTC 2 cut(s) 174, 295
BstMBI GATC 4 cut(s) 193, 394, 420, 570
BstMWI GCNNNNNNNGC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 521
BtsCI GGATG 4 cut(s) 49, 293, 409, 421
Cfr10I RCCGGY 3 cut(s) 265, 286, 595
Cfr13I GGNCC 2 cut(s) 482, 512
Csp6I GTAC 1 cut(s) 323
CspAI ACCGGT 2 cut(s) 265, 286
CviAII CATG 1 cut(s) 319
CviJI RGCY 7 cut(s) 61, 89, 104, 188, 437, 457, 555
CviKI_1 RGCY 7 cut(s) 61, 89, 104, 188, 437, 457, 555
CviQI GTAC 1 cut(s) 323
DpnI GATC 4 cut(s) 195, 396, 422, 572
DpnII GATC 4 cut(s) 193, 394, 420, 570
Eco31I GGTCTC 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 482, 512
EcoRI GAATTC 1 cut(s) 302
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 1 cut(s) 322
FaiI YATR 5 cut(s) 41, 69, 236, 320, 425
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FaqI GGGAC 1 cut(s) 548
FatI CATG 1 cut(s) 318
FauI CCCGC 1 cut(s) 549
FokI GGATG 4 cut(s) 56, 280, 416, 428
FspBI CTAG 1 cut(s) 645
HapII CCGG 6 cut(s) 266, 287, 376, 443, 596, 657
Hin1II CATG 1 cut(s) 322
HincII GTYRAC 2 cut(s) 271, 373
HindII GTYRAC 2 cut(s) 271, 373
HindIII AAGCTT 3 cut(s) 59, 435, 455
HinfI GANTC 5 cut(s) 142, 242, 272, 476, 561
HpaI GTTAAC 1 cut(s) 373
HpaII CCGG 6 cut(s) 266, 287, 376, 443, 596, 657
HphI GGTGA 2 cut(s) 116, 255
Hpy166II GTNNAC 4 cut(s) 271, 373, 515, 593
Hpy188I TCNGA 2 cut(s) 301, 570
Hpy188III TCNNGA 3 cut(s) 173, 352, 480
Hpy8I GTNNAC 4 cut(s) 271, 373, 515, 593
Hpy99I CGWCG 1 cut(s) 604
HpyCH4III ACNGT 5 cut(s) 257, 469, 486, 525, 587
HpyCH4V TGCA 1 cut(s) 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
Hsp92II CATG 1 cut(s) 322
KpnI GGTACC 1 cut(s) 326
KspAI GTTAAC 1 cut(s) 373
Kzo9I GATC 4 cut(s) 193, 394, 420, 570
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 645
MalI GATC 4 cut(s) 195, 396, 422, 572
MboI GATC 4 cut(s) 193, 394, 420, 570
MluCI AATT 9 cut(s) 47, 197, 226, 302, 310, 347, 622, 648, 660
MlyI GAGTC 3 cut(s) 251, 266, 570
MnlI CCTC 4 cut(s) 307, 546, 576, 623
MseI TTAA 3 cut(s) 50, 336, 372
MspI CCGG 6 cut(s) 266, 287, 376, 443, 596, 657
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 4 cut(s) 193, 394, 420, 570
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 1 cut(s) 324
NspV TTCGAA 1 cut(s) 282
PfeI GAWTC 2 cut(s) 142, 476
PinAI ACCGGT 2 cut(s) 265, 286
PleI GAGTC 3 cut(s) 250, 266, 569
PpsI GAGTC 3 cut(s) 250, 266, 569
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 2 cut(s) 482, 512
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SaqAI TTAA 3 cut(s) 50, 336, 372
Sau3AI GATC 4 cut(s) 193, 394, 420, 570
Sau96I GGNCC 2 cut(s) 482, 512
SchI GAGTC 3 cut(s) 251, 266, 570
SetI ASST 9 cut(s) 63, 106, 190, 328, 433, 439, 459, 557, 634
SfaNI GCATC 1 cut(s) 394
SfuI TTCGAA 1 cut(s) 282
SinI GGWCC 2 cut(s) 482, 512
Sse9I AATT 9 cut(s) 47, 197, 226, 302, 310, 347, 622, 648, 660
SsiI CCGC 1 cut(s) 542
SspMI CTAG 1 cut(s) 645
TaaI ACNGT 5 cut(s) 257, 469, 486, 525, 587
TaqI TCGA 2 cut(s) 84, 282
TasI AATT 9 cut(s) 47, 197, 226, 302, 310, 347, 622, 648, 660
TfiI GAWTC 2 cut(s) 142, 476
Tru1I TTAA 3 cut(s) 50, 336, 372
Tru9I TTAA 3 cut(s) 50, 336, 372
TspDTI ATGAA 4 cut(s) 60, 123, 140, 680
VpaK11BI GGWCC 2 cut(s) 482, 512
XapI RAATTY 4 cut(s) 226, 302, 347, 622
XcmI CCANNNNNNNNNTGG 2 cut(s) 316, 522
XspI CTAG 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.