AT5G59760

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002977
Physical Location & Seq
Reverse (-)
24075489 .. 24076550
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59760.1

Sequence Viewer

Length: 699 bp
ATGGATGTCTTATATTCTTCTAATTGGCTTCATCAAGAGAGCATTGATGAGATGAGGCAGAATCTACAGAGCACTCTGTTCGAACTAGAGACACTGAAAATGGAAGCTAATGAGAAATCAAGAACACACAGAGAAGAAGTGAACCAACTTCTCAATCTCCTCAAATTCACTCAGCAAGAAAGAGACGAAGCTAGACAACAGTTATCTCAATTCATCTTCCATACCCAACAAAACCCTAATTCAAGAAGCCTCACTAAATCAAACAGCTTCTCTCACTCTCAAGATGTATCTTCTTCTTCTTCCTCAGAACTCTCCACCTTCCTCAACATCCATCCTCAGCCGTTGACGAATCTTGAAGATCCAACGGCTCATAATCATCATCAGCAGATTGATCCTCTAGACGTTCTTGTGATGGGGAAAGCTTTTCCAGAAACGGGAAAGCTTTTGAAAGCGGTGGTTGAAGCTGGACCGCTTCTTGAAACGCTTCTTTTGGCTGGACCGCTACCAAAATGGATAAACCCGCCGCCTCAAACGCAATCGCAGCGTTTTGAGTTACCTTCTATCTCGTTTAGAGGGTCCGATGTTGATAGTAAATGTGATTCTATGACGTGTTCTGGTTCGGTTAATAGTTTTGGGTTCGGTTCGAGTTTGGTTATCGATCAATCGATGTTAACCGGAAAGAGGCAGAGATTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

232

Amino Acids

26.18

Weight (kDa)

5.49

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 13 - 231 1.1e-68 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 452, 470, 500, 521, 524
AclWI GGATC 2 cut(s) 353, 386
AcsI RAATTY 1 cut(s) 164
AfiI CCNNNNNNNGG 2 cut(s) 434, 681
AflIII ACRYGT 1 cut(s) 608
AgsI TTSAA 5 cut(s) 243, 356, 448, 461, 479
AjiI CACGTC 1 cut(s) 609
AluBI AGCT 6 cut(s) 107, 191, 267, 422, 442, 464
AluI AGCT 6 cut(s) 107, 191, 267, 422, 442, 464
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 83, 177
AlwI GGATC 2 cut(s) 353, 386
ApeKI GCWGC 1 cut(s) 541
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 483
AspS9I GGNCC 3 cut(s) 467, 497, 576
AsuII TTCGAA 1 cut(s) 81
AvaII GGWCC 3 cut(s) 467, 497, 576
Bbv12I GWGCWC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 553
BccI CCATC 2 cut(s) 339, 406
BceAI ACGGC 2 cut(s) 325, 381
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BcoDI GTCTC 2 cut(s) 83, 177
BfaI CTAG 3 cut(s) 86, 192, 398
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 2 cut(s) 524, 542
BlsI GCNGC 2 cut(s) 525, 543
Bme18I GGWCC 3 cut(s) 467, 497, 576
BmgBI CACGTC 1 cut(s) 609
BmgT120I GGNCC 3 cut(s) 467, 497, 576
BmiI GGNNCC 1 cut(s) 577
Bpu10I CCTNAGC 1 cut(s) 336
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 264
Bsa29I ATCGAT 2 cut(s) 657, 665
BsaWI WCCGGW 1 cut(s) 674
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 681
BseCI ATCGAT 2 cut(s) 657, 665
BseGI GGATG 3 cut(s) 10, 327, 331
BseLI CCNNNNNNNGG 2 cut(s) 434, 681
BseMII CTCAG 3 cut(s) 185, 318, 350
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 553
BshVI ATCGAT 2 cut(s) 657, 665
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 675
BslI CCNNNNNNNGG 2 cut(s) 434, 681
BsmAI GTCTC 2 cut(s) 83, 177
BsmBI CGTCTC 1 cut(s) 177
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 3 cut(s) 358, 391, 658
BspACI CCGC 5 cut(s) 452, 470, 500, 521, 524
BspCNI CTCAG 3 cut(s) 184, 317, 349
BspDI ATCGAT 2 cut(s) 657, 665
BspLI GGNNCC 1 cut(s) 577
BspPI GGATC 2 cut(s) 353, 386
BspT104I TTCGAA 1 cut(s) 81
BssMI GATC 3 cut(s) 358, 391, 658
Bst4CI ACNGT 1 cut(s) 201
BstBI TTCGAA 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 171, 304, 336
BstF5I GGATG 3 cut(s) 10, 327, 331
BstKTI GATC 3 cut(s) 361, 394, 661
BstMAI GTCTC 2 cut(s) 83, 177
BstMBI GATC 3 cut(s) 358, 391, 658
BstMWI GCNNNNNNNGC 2 cut(s) 532, 541
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 553
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
Bsu15I ATCGAT 2 cut(s) 657, 665
BsuTUI ATCGAT 2 cut(s) 657, 665
BtrI CACGTC 1 cut(s) 609
BtsCI GGATG 3 cut(s) 10, 327, 331
BtsIMutI CAGTG 1 cut(s) 92
Cfr13I GGNCC 3 cut(s) 467, 497, 576
ClaI ATCGAT 2 cut(s) 657, 665
DdeI CTNAG 3 cut(s) 171, 304, 336
DpnI GATC 3 cut(s) 360, 393, 660
DpnII GATC 3 cut(s) 358, 391, 658
Eco47I GGWCC 3 cut(s) 467, 497, 576
Esp3I CGTCTC 1 cut(s) 177
FaiI YATR 4 cut(s) 13, 222, 372, 605
FauI CCCGC 1 cut(s) 528
Fnu4HI GCNGC 2 cut(s) 524, 542
FokI GGATG 3 cut(s) 17, 314, 318
Fsp4HI GCNGC 2 cut(s) 524, 542
FspBI CTAG 3 cut(s) 86, 192, 398
GluI GCNGC 2 cut(s) 524, 542
HapII CCGG 1 cut(s) 675
HincII GTYRAC 2 cut(s) 345, 672
HindII GTYRAC 2 cut(s) 345, 672
HindIII AAGCTT 2 cut(s) 420, 440
HinfI GANTC 3 cut(s) 61, 349, 599
HpaI GTTAAC 1 cut(s) 672
HpaII CCGG 1 cut(s) 675
Hpy166II GTNNAC 3 cut(s) 142, 345, 672
Hpy188I TCNGA 2 cut(s) 307, 580
Hpy188III TCNNGA 8 cut(s) 35, 120, 243, 281, 353, 398, 428, 476
Hpy8I GTNNAC 3 cut(s) 142, 345, 672
HpyAV CCTTC 2 cut(s) 328, 567
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 2 cut(s) 402, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 532, 541
HpyF3I CTNAG 3 cut(s) 171, 304, 336
HpySE526I ACGT 2 cut(s) 402, 608
KspAI GTTAAC 1 cut(s) 672
Kzo9I GATC 3 cut(s) 358, 391, 658
LpnPI CCDG 5 cut(s) 441, 450, 480, 600, 688
Lsp1109I GCAGC 1 cut(s) 553
MaeI CTAG 3 cut(s) 86, 192, 398
MaeII ACGT 2 cut(s) 402, 608
MaeIII GTNAC 1 cut(s) 552
MalI GATC 3 cut(s) 360, 393, 660
MboI GATC 3 cut(s) 358, 391, 658
MboII GAAGA 8 cut(s) 9, 146, 208, 282, 285, 288, 291, 368
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 4 cut(s) 22, 164, 209, 238
MmeI TCCRAC 1 cut(s) 386
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 2 cut(s) 624, 671
MspI CCGG 1 cut(s) 675
MwoI GCNNNNNNNGC 2 cut(s) 532, 541
NdeII GATC 3 cut(s) 358, 391, 658
NlaIV GGNNCC 1 cut(s) 577
NspV TTCGAA 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 3 cut(s) 61, 349, 599
PkrI GCNGC 2 cut(s) 525, 543
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 3 cut(s) 467, 497, 576
PsuI RGATCY 1 cut(s) 358
SaqAI TTAA 2 cut(s) 624, 671
SatI GCNGC 2 cut(s) 524, 542
Sau3AI GATC 3 cut(s) 358, 391, 658
Sau96I GGNCC 3 cut(s) 467, 497, 576
SduI GDGCHC 1 cut(s) 74
SfcI CTRYAG 1 cut(s) 65
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 3 cut(s) 467, 497, 576
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 4 cut(s) 22, 164, 209, 238
SsiI CCGC 5 cut(s) 452, 470, 500, 521, 524
SspMI CTAG 3 cut(s) 86, 192, 398
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 2 cut(s) 405, 611
TaqI TCGA 4 cut(s) 81, 644, 657, 665
TasI AATT 4 cut(s) 22, 164, 209, 238
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 3 cut(s) 61, 349, 599
Tru1I TTAA 2 cut(s) 624, 671
Tru9I TTAA 2 cut(s) 624, 671
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 541
TspDTI ATGAA 2 cut(s) 20, 202
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 3 cut(s) 467, 497, 576
XapI RAATTY 1 cut(s) 164
XbaI TCTAGA 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 3 cut(s) 86, 192, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.