RchiOBHm_Chr6g0300901

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002977
Physical Location & Seq
Forward (+)
61569810 .. 61570835
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27023

Sequence Viewer

Length: 870 bp
ATGGTATTAAGTACAGATGACTTGAAGCAGAAGATTTTGAGCACCACCCTTGAACTAGAATCAGTGAAGAGTTTAGTAGCTAAGAGTCAACAAAATGCAAACAAGATACTCAGTCTTTTACAGGTTGCATATAAAGAAAGAGATGAAGCCAGAAATGAGTTGCGGCAAATCTTAAACAAGATGAACCCTAATTCTGCTCCAATTGAACAGTTTCCTAATGTTGTCCCACCCATTTTCATGCCCCCAAAAGCAAACTCAGGCATATCTGAGTCGAACGGCATCATTAATCCTCAATATGACTCTTCTCTTGTTGATTCCTTATTTGATGCACTTTCTTCACCAGATTTCTCGAATATCAACGATTCTAGCCACACGAGTTTTTTGAACCAGCCTTTGACAGAAGAACTTATCGGGACTACTAAGAATATTCCCACTGGTGTAGTGGCCTCTTTTGGTTTGGATGCTAAAATTGATTATATTGCTAAAGGCAAGAGTCTGCCTCAAAAAGGGAAGTTGTTGCAGGCTCTGATGGAAGCCGGTCCATTGCTTAAGACGCTTCTTGTCACCGGGCCTCCTCTGCCCCGGTGGCGGAATCCTCCTACTATGCAGACCCTAGAAATCCCACCCATATCACTCGAAGGTTGCGAGGCAATTCTTGCAAGTTTTAATGAGAAACCAGTGATAAAGACATGTTCTTCTAACCATCTGAATTCAATATCCTGTCCTGGATTTTCTCAAACATGTTCACCTGCCATGTGGAATTTCAACAATGTTCCTCCTGTGATATCATGCAAAAGTTCGAGGCCGCTGAATTCGAGTTCATATTTTGATCAACAAATCCCTGCTGCCAAGCAATGTAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

289

Amino Acids

31.56

Weight (kDa)

7.55

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 4 - 232 1.8e-33 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 757
Acc36I ACCTGC 1 cut(s) 757
AciI CCGC 3 cut(s) 163, 589, 806
AcsI RAATTY 3 cut(s) 709, 760, 811
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 506, 588
AflII CTTAAG 1 cut(s) 548
AflIII ACRYGT 2 cut(s) 689, 740
AgsI TTSAA 7 cut(s) 25, 53, 206, 385, 714, 766, 866
AjnI CCWGG 1 cut(s) 724
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 526
AoxI GGCC 3 cut(s) 444, 569, 803
ApeKI GCWGC 1 cut(s) 845
ApoI RAATTY 3 cut(s) 709, 760, 811
AseI ATTAAT 1 cut(s) 285
Asp700I GAANNNNTTC 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 539, 569
AsuC2I CCSGG 2 cut(s) 568, 583
AsuHPI GGTGA 3 cut(s) 330, 556, 738
AvaII GGWCC 1 cut(s) 539
BauI CACGAG 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 832
BccI CCATC 2 cut(s) 523, 711
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 726
BclI TGATCA 1 cut(s) 829
BcnI CCSGG 2 cut(s) 568, 583
BfaI CTAG 3 cut(s) 56, 366, 614
BfrI CTTAAG 1 cut(s) 548
BfuAI ACCTGC 1 cut(s) 757
BglI GCCNNNNNGGC 1 cut(s) 586
BisI GCNGC 3 cut(s) 164, 806, 846
BlsI GCNGC 3 cut(s) 165, 807, 847
Bme1390I CCNGG 3 cut(s) 568, 583, 726
Bme18I GGWCC 1 cut(s) 539
BmgT120I GGNCC 2 cut(s) 539, 569
BmrFI CCNGG 3 cut(s) 568, 583, 726
BmsI GCATC 3 cut(s) 288, 316, 451
BplI GAGNNNNNCTC 2 cut(s) 484, 516
BpuMI CCSGG 2 cut(s) 568, 583
BsaJI CCNNGG 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 588
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 2 cut(s) 439, 677
Bse3DI GCAATG 2 cut(s) 542, 860
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 581
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 2 cut(s) 506, 588
BseMI GCAATG 2 cut(s) 542, 860
BseMII CTCAG 3 cut(s) 124, 258, 270
BseNI ACTGG 2 cut(s) 439, 677
BseRI GAGGAG 1 cut(s) 564
BseXI GCAGC 1 cut(s) 832
BshFI GGCC 3 cut(s) 446, 571, 805
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 3 cut(s) 537, 567, 583
BslFI GGGAC 2 cut(s) 209, 427
BslI CCNNNNNNNGG 2 cut(s) 506, 588
BsmFI GGGAC 2 cut(s) 209, 427
BsnI GGCC 3 cut(s) 446, 571, 805
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 829
BspACI CCGC 3 cut(s) 163, 589, 806
BspANI GGCC 3 cut(s) 446, 571, 805
BspCNI CTCAG 3 cut(s) 123, 259, 269
BspMI ACCTGC 1 cut(s) 757
BspTI CTTAAG 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 542, 860
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 2 cut(s) 439, 677
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 1 cut(s) 581
BssMI GATC 1 cut(s) 829
BssSI CACGAG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 2 cut(s) 62, 307
BstAFI CTTAAG 1 cut(s) 548
BstAPI GCANNNNNTGC 1 cut(s) 656
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 5 cut(s) 81, 110, 256, 267, 420
BstENI CCTNNNNNAGG 1 cut(s) 504
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 1 cut(s) 832
BstMBI GATC 1 cut(s) 829
BstMWI GCNNNNNNNGC 5 cut(s) 553, 577, 586, 656, 859
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 2 cut(s) 693, 744
BstSCI CCNGG 3 cut(s) 566, 581, 724
BstV1I GCAGC 1 cut(s) 832
BsuRI GGCC 3 cut(s) 446, 571, 805
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 3 cut(s) 69, 432, 684
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 1 cut(s) 522
CaiI CAGNNNCTG 1 cut(s) 526
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 2 cut(s) 539, 569
CseI GACGC 1 cut(s) 562
Csp6I GTAC 1 cut(s) 12
CviAII CATG 5 cut(s) 238, 690, 741, 754, 789
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 5 cut(s) 81, 110, 256, 267, 420
DpnI GATC 1 cut(s) 831
DpnII GATC 1 cut(s) 829
Eam1104I CTCTTC 2 cut(s) 62, 307
EarI CTCTTC 2 cut(s) 62, 307
EciI GGCGGA 1 cut(s) 604
Eco32I GATATC 1 cut(s) 786
Eco47I GGWCC 1 cut(s) 539
EcoNI CCTNNNNNAGG 1 cut(s) 504
EcoRI GAATTC 2 cut(s) 709, 811
EcoRII CCWGG 1 cut(s) 724
EcoRV GATATC 1 cut(s) 786
FaeI CATG 5 cut(s) 241, 693, 744, 757, 792
FaqI GGGAC 2 cut(s) 209, 427
FatI CATG 5 cut(s) 237, 689, 740, 753, 788
FbaI TGATCA 1 cut(s) 829
Fnu4HI GCNGC 3 cut(s) 164, 806, 846
FokI GGATG 1 cut(s) 473
Fsp4HI GCNGC 3 cut(s) 164, 806, 846
FspBI CTAG 3 cut(s) 56, 366, 614
GluI GCNGC 3 cut(s) 164, 806, 846
HaeIII GGCC 3 cut(s) 446, 571, 805
HapII CCGG 3 cut(s) 537, 567, 583
HgaI GACGC 1 cut(s) 562
Hin1II CATG 5 cut(s) 241, 693, 744, 757, 792
HincII GTYRAC 1 cut(s) 89
HindII GTYRAC 1 cut(s) 89
HinfI GANTC 8 cut(s) 59, 85, 269, 299, 314, 362, 493, 592
HpaII CCGG 3 cut(s) 537, 567, 583
HphI GGTGA 3 cut(s) 330, 556, 738
Hpy166II GTNNAC 2 cut(s) 89, 746
Hpy188I TCNGA 3 cut(s) 268, 528, 708
Hpy188III TCNNGA 2 cut(s) 349, 412
Hpy8I GTNNAC 2 cut(s) 89, 746
HpyAV CCTTC 1 cut(s) 632
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 7 cut(s) 98, 128, 329, 520, 607, 659, 792
HpyF10VI GCNNNNNNNGC 5 cut(s) 553, 577, 586, 656, 859
HpyF3I CTNAG 5 cut(s) 81, 110, 256, 267, 420
Hsp92II CATG 5 cut(s) 241, 693, 744, 757, 792
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 1 cut(s) 829
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 1 cut(s) 832
LweI GCATC 3 cut(s) 288, 316, 451
MaeI CTAG 3 cut(s) 56, 366, 614
MaeIII GTNAC 1 cut(s) 562
MalI GATC 1 cut(s) 831
MboI GATC 1 cut(s) 829
MboII GAAGA 6 cut(s) 43, 79, 294, 327, 413, 687
MfeI CAATTG 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 7 cut(s) 190, 201, 468, 651, 709, 760, 811
MlyI GAGTC 4 cut(s) 94, 278, 293, 502
MnlI CCTC 9 cut(s) 300, 457, 510, 582, 585, 606, 640, 786, 795
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 5 cut(s) 8, 173, 285, 549, 666
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 808
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 3 cut(s) 537, 567, 583
MspR9I CCNGG 3 cut(s) 568, 583, 726
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 726
MwoI GCNNNNNNNGC 5 cut(s) 553, 577, 586, 656, 859
NciI CCSGG 2 cut(s) 568, 583
NdeII GATC 1 cut(s) 829
NlaIII CATG 5 cut(s) 241, 693, 744, 757, 792
NmuCI GTSAC 1 cut(s) 562
NspI RCATGY 2 cut(s) 693, 744
PaqCI CACCTGC 1 cut(s) 757
PciI ACATGT 2 cut(s) 689, 740
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 4 cut(s) 59, 314, 362, 592
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 3 cut(s) 165, 807, 847
PleI GAGTC 4 cut(s) 93, 277, 293, 501
PpsI GAGTC 4 cut(s) 93, 277, 293, 501
PscI ACATGT 2 cut(s) 689, 740
PshBI ATTAAT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 724
PspPI GGNCC 2 cut(s) 539, 569
PstNI CAGNNNCTG 1 cut(s) 526
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 5 cut(s) 8, 173, 285, 549, 666
SatI GCNGC 3 cut(s) 164, 806, 846
Sau3AI GATC 1 cut(s) 829
Sau96I GGNCC 2 cut(s) 539, 569
SchI GAGTC 4 cut(s) 94, 278, 293, 502
ScrFI CCNGG 3 cut(s) 568, 583, 726
SduI GDGCHC 1 cut(s) 44
SetI ASST 4 cut(s) 82, 126, 643, 751
SfaNI GCATC 3 cut(s) 288, 316, 451
SinI GGWCC 1 cut(s) 539
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 7 cut(s) 190, 201, 468, 651, 709, 760, 811
SsiI CCGC 3 cut(s) 163, 589, 806
SspI AATATT 1 cut(s) 427
SspMI CTAG 3 cut(s) 56, 366, 614
StyD4I CCNGG 3 cut(s) 566, 581, 724
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 5 cut(s) 272, 350, 636, 800, 815
TasI AATT 7 cut(s) 190, 201, 468, 651, 709, 760, 811
TatI WGTACW 1 cut(s) 11
TauI GCSGC 2 cut(s) 166, 808
TfiI GAWTC 4 cut(s) 59, 314, 362, 592
Tru1I TTAA 5 cut(s) 8, 173, 285, 549, 666
Tru9I TTAA 5 cut(s) 8, 173, 285, 549, 666
TscAI CASTG 3 cut(s) 69, 439, 684
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 1 cut(s) 845
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 4 cut(s) 159, 197, 226, 810
TspRI CASTG 3 cut(s) 69, 439, 684
Vha464I CTTAAG 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 539
VspI ATTAAT 1 cut(s) 285
XagI CCTNNNNNAGG 1 cut(s) 504
XapI RAATTY 3 cut(s) 709, 760, 811
XceI RCATGY 2 cut(s) 693, 744
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 3 cut(s) 56, 366, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.