Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006254.1

Orthogroup ID

OG0002977

Physical Location & Seq

Genomic Coordinates Forward (+)

3250 .. 4063

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006254.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgaaccctaattctgctccaattgaacagtttcctaatgttgtcccacccattttcatgcccccaaaagcaaactcaggcatatctgagtcgaacggcatcattaatcctcaatatgactcttctcttgttgattccttatttgatgcactttcttcaccagatttctcgaatatcaacgattctagccacacgagttttttgaaccagcctttgacagaagaacttatcgggactactaagaatattcccactggtgtagcggcctcttttggtttggatgctaaaattgattatattgctaaaggcaagagtctgcctcaaaaagggaagttgttgcaggctctgatggaagccggcaagagtctgcctcaaaaagggaagttgttgcaggctctgatggaagccggtccattgcttaagacgcttcttgtcaccgggcctcctctgccccggtggcggaatcctcctactatgcagaccctagaaatcccacccatatcagtcgaaggttgcgaggcaattcttgcaagttttaatgagaaaccagtgataaaggcatgttcttctaaccatctgaattcaatatcttgtcctggattttctcaaacatgttcagctgccatgtggaatttcaacaatgttcctcctatgatatcatgcaaaagttcgaggccgctgaattcgagttcatattttgatcaacaaatccctgctgccaagcaatgtaggcttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1635

Protein Analysis

246

Amino Acids

26.45

Weight (kDa)

7.56

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28690 AT5G59760
fragaria_vesca	FvH4_3g34910 FvH4_3g34910
malus_domestica	MD03G1100400.v1.1 MD11G1114400.v1.1
prunus_persica	Prupe.6G085300_v2.0.a1
pyrus_communis	pycom03g08250 pycom11g09620
rosa_chinensis	RchiOBHm_Chr1g0380111 RchiOBHm_Chr5g0062781 RchiOBHm_Chr6g0300901
rosa_laevigata	RLG00000011292 RLG00000026330 RLG00000035577
rosa_multiflora	Rmu_sc0001232.1_g000013 Rmu_sc0004576.1_g000006 Rmu_sc0006254.1_g000002 Rmu_ssc0000472.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017840 Rroxscaffold_4G00279670 Rroxscaffold_7G00167330
rosa_rugosa	Rorug01G0417500 Rorug05G0351600
rosa_samantha	Rh1AG442700 Rh1BG397800 Rh1CG411300 Rh1DG428600 Rh5AG412600 Rh5BG426500 Rh5CG450600 Rh5DG440400 Rh6AG412900 Rh6BG420100 Rh6CG427600 Rh6DG412900
rosa_wichuraiana	Rw1G038440 Rw5G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	263, 460, 677
AcsI	RAATTY	3 cut(s)	580, 631, 682
AfiI	CCNNNNNNNGG	3 cut(s)	326, 377, 459
AflII	CTTAAG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	611
AgsI	TTSAA	5 cut(s)	26, 205, 585, 637, 737
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	1 cut(s)	620
AluI	AGCT	1 cut(s)	620
AlwNI	CAGNNNCTG	2 cut(s)	346, 397
AoxI	GGCC	3 cut(s)	264, 440, 674
ApeKI	GCWGC	2 cut(s)	620, 716
ApoI	RAATTY	3 cut(s)	580, 631, 682
AseI	ATTAAT	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	410, 440
AsuC2I	CCSGG	2 cut(s)	439, 454
AsuHPI	GGTGA	2 cut(s)	150, 427
AvaII	GGWCC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	607, 703
BccI	CCATC	3 cut(s)	343, 394, 582
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	597
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	2 cut(s)	439, 454
BfaI	CTAG	2 cut(s)	186, 485
BfrI	CTTAAG	1 cut(s)	419
BglI	GCCNNNNNGGC	1 cut(s)	457
BisI	GCNGC	4 cut(s)	264, 621, 677, 717
BlsI	GCNGC	4 cut(s)	265, 622, 678, 718
Bme1390I	CCNGG	3 cut(s)	439, 454, 597
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	2 cut(s)	410, 440
BmrFI	CCNGG	3 cut(s)	439, 454, 597
BmsI	GCATC	3 cut(s)	108, 136, 271
BplI	GAGNNNNNCTC	4 cut(s)	304, 336, 355, 387
BpuMI	CCSGG	2 cut(s)	439, 454
BsaJI	CCNNGG	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 377, 459
Bse118I	RCCGGY	2 cut(s)	356, 407
Bse1I	ACTGG	2 cut(s)	259, 548
Bse3DI	GCAATG	2 cut(s)	413, 731
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	452
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	326, 377, 459
BseMI	GCAATG	2 cut(s)	413, 731
BseMII	CTCAG	2 cut(s)	78, 90
BseNI	ACTGG	2 cut(s)	259, 548
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	2 cut(s)	607, 703
BshFI	GGCC	3 cut(s)	266, 442, 676
BsiSI	CCGG	4 cut(s)	357, 408, 438, 454
BslFI	GGGAC	2 cut(s)	29, 247
BslI	CCNNNNNNNGG	3 cut(s)	326, 377, 459
BsmFI	GGGAC	2 cut(s)	29, 247
BsnI	GGCC	3 cut(s)	266, 442, 676
Bsp143I	GATC	1 cut(s)	700
BspACI	CCGC	3 cut(s)	263, 460, 677
BspANI	GGCC	3 cut(s)	266, 442, 676
BspCNI	CTCAG	2 cut(s)	79, 89
BspTI	CTTAAG	1 cut(s)	419
BsrDI	GCAATG	2 cut(s)	413, 731
BsrFI	RCCGGY	2 cut(s)	356, 407
BsrI	ACTGG	2 cut(s)	259, 548
BssAI	RCCGGY	2 cut(s)	356, 407
BssECI	CCNNGG	1 cut(s)	452
BssMI	GATC	1 cut(s)	700
BssSI	CACGAG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	127
BstAFI	CTTAAG	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	342, 358, 393
BstDEI	CTNAG	3 cut(s)	76, 87, 240
BstENI	CCTNNNNNAGG	2 cut(s)	324, 375
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	703
BstMBI	GATC	1 cut(s)	700
BstMWI	GCNNNNNNNGC	5 cut(s)	424, 448, 457, 527, 730
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	2 cut(s)	564, 615
BstSCI	CCNGG	3 cut(s)	437, 452, 595
BstV1I	GCAGC	2 cut(s)	607, 703
BsuRI	GGCC	3 cut(s)	266, 442, 676
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	2 cut(s)	252, 555
Cac8I	GCNNGC	3 cut(s)	342, 358, 393
CaiI	CAGNNNCTG	2 cut(s)	346, 397
Cfr10I	RCCGGY	2 cut(s)	356, 407
Cfr13I	GGNCC	2 cut(s)	410, 440
CseI	GACGC	1 cut(s)	433
CviAII	CATG	5 cut(s)	58, 561, 612, 625, 660
DdeI	CTNAG	3 cut(s)	76, 87, 240
DpnI	GATC	1 cut(s)	702
DpnII	GATC	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	475
Eco32I	GATATC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	410
EcoNI	CCTNNNNNAGG	2 cut(s)	324, 375
EcoRI	GAATTC	2 cut(s)	580, 682
EcoRII	CCWGG	1 cut(s)	595
EcoRV	GATATC	1 cut(s)	657
FaeI	CATG	5 cut(s)	61, 564, 615, 628, 663
FaqI	GGGAC	2 cut(s)	29, 247
FatI	CATG	5 cut(s)	57, 560, 611, 624, 659
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	4 cut(s)	264, 621, 677, 717
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	4 cut(s)	264, 621, 677, 717
FspBI	CTAG	2 cut(s)	186, 485
GluI	GCNGC	4 cut(s)	264, 621, 677, 717
HaeIII	GGCC	3 cut(s)	266, 442, 676
HapII	CCGG	4 cut(s)	357, 408, 438, 454
HgaI	GACGC	1 cut(s)	433
Hin1II	CATG	5 cut(s)	61, 564, 615, 628, 663
HinfI	GANTC	7 cut(s)	89, 119, 134, 182, 313, 364, 463
HpaII	CCGG	4 cut(s)	357, 408, 438, 454
HphI	GGTGA	2 cut(s)	150, 427
Hpy188I	TCNGA	4 cut(s)	88, 348, 399, 579
Hpy188III	TCNNGA	2 cut(s)	169, 232
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	6 cut(s)	149, 340, 391, 478, 530, 663
HpyF10VI	GCNNNNNNNGC	5 cut(s)	424, 448, 457, 527, 730
HpyF3I	CTNAG	3 cut(s)	76, 87, 240
Hsp92II	CATG	5 cut(s)	61, 564, 615, 628, 663
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	1 cut(s)	700
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	2 cut(s)	607, 703
LweI	GCATC	3 cut(s)	108, 136, 271
MaeI	CTAG	2 cut(s)	186, 485
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	1 cut(s)	702
MboI	GATC	1 cut(s)	700
MboII	GAAGA	4 cut(s)	114, 147, 233, 558
MfeI	CAATTG	1 cut(s)	21
MluCI	AATT	7 cut(s)	10, 21, 288, 522, 580, 631, 682
MlyI	GAGTC	4 cut(s)	98, 113, 322, 373
MroNI	GCCGGC	1 cut(s)	356
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	3 cut(s)	105, 420, 537
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	620, 679
MspCI	CTTAAG	1 cut(s)	419
MspI	CCGG	4 cut(s)	357, 408, 438, 454
MspR9I	CCNGG	3 cut(s)	439, 454, 597
MunI	CAATTG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	5 cut(s)	424, 448, 457, 527, 730
NaeI	GCCGGC	1 cut(s)	358
NciI	CCSGG	2 cut(s)	439, 454
NdeII	GATC	1 cut(s)	700
NgoMIV	GCCGGC	1 cut(s)	356
NlaIII	CATG	5 cut(s)	61, 564, 615, 628, 663
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	2 cut(s)	564, 615
PciI	ACATGT	1 cut(s)	611
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PdiI	GCCGGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	134, 182, 463
PfoI	TCCNGGA	1 cut(s)	595
PkrI	GCNGC	4 cut(s)	265, 622, 678, 718
PleI	GAGTC	4 cut(s)	97, 113, 321, 372
PpsI	GAGTC	4 cut(s)	97, 113, 321, 372
PscI	ACATGT	1 cut(s)	611
PshBI	ATTAAT	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PspPI	GGNCC	2 cut(s)	410, 440
PstNI	CAGNNNCTG	2 cut(s)	346, 397
PvuII	CAGCTG	1 cut(s)	620
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	3 cut(s)	105, 420, 537
SatI	GCNGC	4 cut(s)	264, 621, 677, 717
Sau3AI	GATC	1 cut(s)	700
Sau96I	GGNCC	2 cut(s)	410, 440
SchI	GAGTC	4 cut(s)	98, 113, 322, 373
ScrFI	CCNGG	3 cut(s)	439, 454, 597
SetI	ASST	2 cut(s)	514, 622
SfaNI	GCATC	3 cut(s)	108, 136, 271
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	7 cut(s)	10, 21, 288, 522, 580, 631, 682
SsiI	CCGC	3 cut(s)	263, 460, 677
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	2 cut(s)	186, 485
StyD4I	CCNGG	3 cut(s)	437, 452, 595
TaaI	ACNGT	1 cut(s)	30
TaqI	TCGA	5 cut(s)	92, 170, 507, 671, 686
TasI	AATT	7 cut(s)	10, 21, 288, 522, 580, 631, 682
TauI	GCSGC	2 cut(s)	266, 679
TfiI	GAWTC	3 cut(s)	134, 182, 463
Tru1I	TTAA	3 cut(s)	105, 420, 537
Tru9I	TTAA	3 cut(s)	105, 420, 537
TscAI	CASTG	2 cut(s)	259, 555
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	620, 716
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	3 cut(s)	17, 46, 681
TspRI	CASTG	2 cut(s)	259, 555
Vha464I	CTTAAG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	105
XagI	CCTNNNNNAGG	2 cut(s)	324, 375
XapI	RAATTY	3 cut(s)	580, 631, 682
XceI	RCATGY	2 cut(s)	564, 615
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	2 cut(s)	186, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.