Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002977

Physical Location & Seq

Genomic Coordinates Forward (+)

5753052 .. 5755722

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G085300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGGACTTGGGTTCTCTGTGGACTACTTATCATGAGAGCACTGATGAGTTGAAGCAGAAGCTTCTGTACACAGCCCTTGAGCTGGAATCAGTAAAAACTTTAGCAACTGATGAAATCAGAAAGAGTGAGGAGAATGTGAACAATTTGCTCAATCTTTTGAAGGTTGCATACAAAGAAAGAGATGATGCCAGAGCTCAGCTTCACAAGCTCCTAAACAAGATCATGCCTTCAAGTCCAATTGAAGCACCCATTAATATGTTTCCACATGTCCAGCCTGAAAGCTCACTTTTAATTCCCACCAAAGCAAATTCCAGCATAACTGAATCTAACAGCCTCTCTGAAACATACAACCACCAATCCCATGGCTCTTCCCCTGTGGAATCTTTATTTGATGCAGTTTCTTCACCAGAGTTCTCAAACATCAACATGGCAGACTCTGGTAACATTGCTTTTGTGAAGCAGCAGCAGCAGCAGCAGCCTTTGGTGCAAGAATTTAATGCCTCTATGTCTTCTGGCATGACCAAAACTGATCCTGCTTCGGCAGTGATTGACAATTTTGTCAAAGGGAAGACTCTGCCTCAAAAAGGGAAGCTCTTGCAGGCTGTGATGGAAGCCGGCCCGCTGCTTCAGACACTTCTTGTCGCCGGGCCTCTTCCTCGCTGGCGAAATCCTCCTCCTTTGCAGTCGTTCAAAATCCCACCTGTTTCTATCAAAGGCTGTGAAGCTGCAAGTTTTAACCAGAAACCAATGGCTAATCCTAGTTATGGGGTTCATAATAAGCCACTGAGTTTTGCATCATATCCTGAGATGTCTCGTGGGTTTTCGCAAACATGTTCAGCTTCCATGTTGAATTTCAACAATGGTGCTTCTGGATCATGCCCGAACAATGCAAGGCTGCTCACTTCAAATTCCAGTATTGACCACCAAATCCCAATTGGCAAGCGGCAGAGGCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1635

Protein Analysis

321

Amino Acids

35.12

Weight (kDa)

7.06

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28690 AT5G59760
fragaria_vesca	FvH4_3g34910 FvH4_3g34910
malus_domestica	MD03G1100400.v1.1 MD11G1114400.v1.1
prunus_persica	Prupe.6G085300_v2.0.a1
pyrus_communis	pycom03g08250 pycom11g09620
rosa_chinensis	RchiOBHm_Chr1g0380111 RchiOBHm_Chr5g0062781 RchiOBHm_Chr6g0300901
rosa_laevigata	RLG00000011292 RLG00000026330 RLG00000035577
rosa_multiflora	Rmu_sc0001232.1_g000013 Rmu_sc0004576.1_g000006 Rmu_sc0006254.1_g000002 Rmu_ssc0000472.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017840 Rroxscaffold_4G00279670 Rroxscaffold_7G00167330
rosa_rugosa	Rorug01G0417500 Rorug05G0351600
rosa_samantha	Rh1AG442700 Rh1BG397800 Rh1CG411300 Rh1DG428600 Rh5AG412600 Rh5BG426500 Rh5CG450600 Rh5DG440400 Rh6AG412900 Rh6BG420100 Rh6CG427600 Rh6DG412900
rosa_wichuraiana	Rw1G038440 Rw5G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
AciI	CCGC	2 cut(s)	623, 946
AclWI	GGATC	2 cut(s)	527, 883
AcsI	RAATTY	4 cut(s)	310, 494, 853, 910
AcuI	CTGAAG	1 cut(s)	614
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	3 cut(s)	85, 587, 767
AflIII	ACRYGT	2 cut(s)	268, 833
AgsI	TTSAA	9 cut(s)	55, 163, 234, 245, 694, 853, 859, 909, 959
AluBI	AGCT	9 cut(s)	64, 85, 197, 202, 211, 285, 595, 728, 842
AluI	AGCT	9 cut(s)	64, 85, 197, 202, 211, 285, 595, 728, 842
Alw21I	GWGCWC	2 cut(s)	44, 199
Alw26I	GTCTC	1 cut(s)	819
AlwI	GGATC	2 cut(s)	527, 883
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	619, 650
ApeKI	GCWGC	9 cut(s)	463, 466, 469, 472, 475, 478, 625, 728, 898
ApoI	RAATTY	4 cut(s)	310, 494, 853, 910
AseI	ATTAAT	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	620, 650
AsuC2I	CCSGG	1 cut(s)	649
AsuHPI	GGTGA	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	199
BarI	GAAGNNNNNNTAC	4 cut(s)	53, 85, 155, 187
BauI	CACGAG	1 cut(s)	816
BbsI	GAAGAC	2 cut(s)	504, 578
Bbv12I	GWGCWC	2 cut(s)	44, 199
BbvI	GCAGC	9 cut(s)	475, 478, 481, 484, 487, 490, 612, 715, 885
BccI	CCATC	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	649
BcoDI	GTCTC	1 cut(s)	819
BfaI	CTAG	1 cut(s)	762
BlpI	GCTNAGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	649
BmgT120I	GGNCC	2 cut(s)	620, 650
BmrFI	CCNGG	1 cut(s)	649
BmsI	GCATC	3 cut(s)	178, 385, 806
BpiI	GAAGAC	2 cut(s)	504, 578
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	649
BsaJI	CCNNGG	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 587, 767
Bse118I	RCCGGY	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	915
Bse3DI	GCAATG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	364
BseLI	CCNNNNNNNGG	3 cut(s)	85, 587, 767
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	3 cut(s)	212, 779, 798
BseNI	ACTGG	1 cut(s)	915
BseRI	GAGGAG	2 cut(s)	146, 666
BseXI	GCAGC	9 cut(s)	475, 478, 481, 484, 487, 490, 612, 715, 885
BshFI	GGCC	2 cut(s)	621, 652
BsiHKAI	GWGCWC	2 cut(s)	44, 199
BsiSI	CCGG	2 cut(s)	618, 648
BslI	CCNNNNNNNGG	3 cut(s)	85, 587, 767
BsmAI	GTCTC	1 cut(s)	819
BsnI	GGCC	2 cut(s)	621, 652
Bsp1286I	GDGCHC	2 cut(s)	44, 199
Bsp1407I	TGTACA	1 cut(s)	69
Bsp143I	GATC	3 cut(s)	222, 532, 875
Bsp1720I	GCTNAGC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	364
BspACI	CCGC	2 cut(s)	623, 946
BspANI	GGCC	2 cut(s)	621, 652
BspCNI	CTCAG	3 cut(s)	211, 780, 799
BspHI	TCATGA	1 cut(s)	34
BspPI	GGATC	2 cut(s)	527, 883
BspQI	GCTCTTC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	617
BsrGI	TGTACA	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	915
BssAI	RCCGGY	1 cut(s)	617
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	3 cut(s)	222, 532, 875
BssSI	CACGAG	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	364
Bst2BI	CACGAG	1 cut(s)	816
Bst6I	CTCTTC	2 cut(s)	376, 660
BstAUI	TGTACA	1 cut(s)	69
BstC8I	GCNNGC	5 cut(s)	603, 619, 623, 665, 944
BstDEI	CTNAG	3 cut(s)	198, 788, 807
BstDSI	CCRYGG	1 cut(s)	364
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstKTI	GATC	3 cut(s)	225, 535, 878
BstMAI	GTCTC	1 cut(s)	819
BstMBI	GATC	3 cut(s)	222, 532, 875
BstMWI	GCNNNNNNNGC	7 cut(s)	208, 469, 472, 475, 478, 487, 952
BstNSI	RCATGY	2 cut(s)	272, 837
BstSCI	CCNGG	1 cut(s)	647
BstV1I	GCAGC	9 cut(s)	475, 478, 481, 484, 487, 490, 612, 715, 885
BstV2I	GAAGAC	2 cut(s)	504, 578
BstXI	CCANNNNNNTGG	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	621, 652
BtgI	CCRYGG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	3 cut(s)	42, 552, 785
Cac8I	GCNNGC	5 cut(s)	603, 619, 623, 665, 944
CaiI	CAGNNNCTG	1 cut(s)	440
CciI	TCATGA	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	617
Cfr13I	GGNCC	2 cut(s)	620, 650
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	9 cut(s)	35, 226, 269, 365, 430, 520, 834, 847, 879
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	3 cut(s)	198, 788, 807
DpnI	GATC	3 cut(s)	224, 534, 877
DpnII	GATC	3 cut(s)	222, 532, 875
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
Eam1104I	CTCTTC	2 cut(s)	376, 660
EarI	CTCTTC	2 cut(s)	376, 660
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	614
EcoICRI	GAGCTC	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoT14I	CCWWGG	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	9 cut(s)	38, 229, 272, 368, 433, 523, 837, 850, 882
FatI	CATG	9 cut(s)	34, 225, 268, 364, 429, 519, 833, 846, 878
FauI	CCCGC	1 cut(s)	630
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	762
HaeIII	GGCC	2 cut(s)	621, 652
HapII	CCGG	2 cut(s)	618, 648
Hin1II	CATG	9 cut(s)	38, 229, 272, 368, 433, 523, 837, 850, 882
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	5 cut(s)	89, 326, 383, 437, 574
HpaII	CCGG	2 cut(s)	618, 648
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	3 cut(s)	24, 72, 142
Hpy188I	TCNGA	3 cut(s)	122, 343, 633
Hpy188III	TCNNGA	3 cut(s)	35, 806, 873
Hpy8I	GTNNAC	3 cut(s)	24, 72, 142
HpyAV	CCTTC	2 cut(s)	157, 240
HpyCH4V	TGCA	8 cut(s)	170, 398, 490, 601, 685, 731, 797, 893
HpyF10VI	GCNNNNNNNGC	7 cut(s)	208, 469, 472, 475, 478, 487, 952
HpyF3I	CTNAG	3 cut(s)	198, 788, 807
Hsp92II	CATG	9 cut(s)	38, 229, 272, 368, 433, 523, 837, 850, 882
KroI	GCCGGC	1 cut(s)	617
KroNI	GCCGGC	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	222, 532, 875
LguI	GCTCTTC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	216
Lsp1109I	GCAGC	9 cut(s)	475, 478, 481, 484, 487, 490, 612, 715, 885
LweI	GCATC	3 cut(s)	178, 385, 806
MaeI	CTAG	1 cut(s)	762
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	3 cut(s)	224, 534, 877
MboI	GATC	3 cut(s)	222, 532, 875
MboII	GAAGA	5 cut(s)	363, 396, 504, 583, 647
MfeI	CAATTG	2 cut(s)	240, 936
MhlI	GDGCHC	2 cut(s)	44, 199
MluCI	AATT	9 cut(s)	145, 240, 294, 310, 494, 556, 853, 910, 936
MlyI	GAGTC	2 cut(s)	431, 568
MnlI	CCTC	9 cut(s)	124, 347, 514, 591, 663, 669, 684, 687, 945
MroNI	GCCGGC	1 cut(s)	617
MseI	TTAA	4 cut(s)	255, 293, 498, 738
MslI	CAYNNNNRTG	2 cut(s)	257, 428
MspA1I	CMGCKG	1 cut(s)	625
MspI	CCGG	2 cut(s)	618, 648
MspR9I	CCNGG	1 cut(s)	649
MunI	CAATTG	2 cut(s)	240, 936
MwoI	GCNNNNNNNGC	7 cut(s)	208, 469, 472, 475, 478, 487, 952
NaeI	GCCGGC	1 cut(s)	619
NciI	CCSGG	1 cut(s)	649
NcoI	CCATGG	1 cut(s)	364
NdeII	GATC	3 cut(s)	222, 532, 875
NgoMIV	GCCGGC	1 cut(s)	617
NlaIII	CATG	9 cut(s)	38, 229, 272, 368, 433, 523, 837, 850, 882
NspI	RCATGY	2 cut(s)	272, 837
PagI	TCATGA	1 cut(s)	34
PciI	ACATGT	2 cut(s)	268, 833
PciSI	GCTCTTC	1 cut(s)	376
PdiI	GCCGGC	1 cut(s)	619
PfeI	GAWTC	3 cut(s)	89, 326, 383
PleI	GAGTC	2 cut(s)	431, 568
PpsI	GAGTC	2 cut(s)	431, 568
PscI	ACATGT	2 cut(s)	268, 833
PshBI	ATTAAT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	620, 650
PstNI	CAGNNNCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	257, 428
SacI	GAGCTC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	376
SaqAI	TTAA	4 cut(s)	255, 293, 498, 738
Sau3AI	GATC	3 cut(s)	222, 532, 875
Sau96I	GGNCC	2 cut(s)	620, 650
SchI	GAGTC	2 cut(s)	431, 568
ScrFI	CCNGG	1 cut(s)	649
SduI	GDGCHC	2 cut(s)	44, 199
SfaNI	GCATC	3 cut(s)	178, 385, 806
SmiMI	CAYNNNNRTG	2 cut(s)	257, 428
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	9 cut(s)	145, 240, 294, 310, 494, 556, 853, 910, 936
SsiI	CCGC	2 cut(s)	623, 946
SspMI	CTAG	1 cut(s)	762
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	647
StyI	CCWWGG	1 cut(s)	364
TasI	AATT	9 cut(s)	145, 240, 294, 310, 494, 556, 853, 910, 936
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	1 cut(s)	949
TfiI	GAWTC	3 cut(s)	89, 326, 383
Tru1I	TTAA	4 cut(s)	255, 293, 498, 738
Tru9I	TTAA	4 cut(s)	255, 293, 498, 738
TscAI	CASTG	3 cut(s)	49, 552, 792
TseI	GCWGC	9 cut(s)	463, 466, 469, 472, 475, 478, 625, 728, 898
TspDTI	ATGAA	2 cut(s)	129, 764
TspRI	CASTG	3 cut(s)	49, 552, 792
VspI	ATTAAT	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	4 cut(s)	310, 494, 853, 910
XceI	RCATGY	2 cut(s)	272, 837
XcmI	CCANNNNNNNNNTGG	2 cut(s)	362, 935
XspI	CTAG	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.