Rh5BG426500

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002977
Physical Location & Seq
Reverse (-)
69038217 .. 69039242
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG426500.1

Sequence Viewer

Length: 1026 bp
ATGATTCTACAGGAATTTTATGTTTCTTCCAATTTTATTAGAAGCCCTTTGTCTGAAACTGACCAATTACCTGTTCTGAATCCACAGAGCACTGATGATTTGAACAAGAAGCTTCTTTACACTACCCTTGAGCTTGAAACAATGAAGAATTTAGCAACAGAGAGTCAAGAGAATGTGAAGAATCTACTCAATCTACTAAAGGTTGCATACAAAGAAAGAGATGAAGCCAGAGACCAGCTGCACAAGTTCTTCAACAAGATCACTGCTTCTACTCCAATTGACTTACCCAATGTGCAGTTTAATCAAGTAGCCCAGCCCGAAAGTCCGACTTTGATGCCCACAAAAGCAAACTCAAGCATTACTGAATCCAACAGCCTCTCTGAAACTTACAATCCCCAATCACATATCTCTTCTCCTGTTGATTCATTGTTTGATGCAGTCTCTTCCCCTGAGTTTTCCAATATCAACATGGCTGATTCTAGCAACAACATGGGTTTTGTGAAGCAGCCTTTGGTGAAAGAATTTAATGGAAGTACTATTATACCTACTGGTGTAGTAGTCTCTTCTGGTTCAAGTATCAAAGCTGATCCTGCTGATGAAATAATTGACAATTTTGTTAGGGGTAGGCCTTTGCCTCAGAAAGGGATGTTATTGCAAGCTGTGATGGATGCTGGTCCATTGCTTCAGACACTTCTCGTTGCAGGTCCTATGCCCCGGTGGCGAAATCCCCCTCCTTTGCAGCCCTTCAAAATCCCACCAGTTTCAATCAAAGGTTGTGAAGCTGCTGTGAGTTTTAACAACCAGAAACCAGTGGCAAGTCATACCTATGTGGTTCATAAGACACAGAACGCAACATCTTATCCTGAGATGACTCGAGGCTTTTCTCAAACATGCTCAGCTGCCATGTTGAATTTCAACAATGTCAATCCTAATGCTGTTTCATACCTAAACAATTCAAGAATGCCGAGTTCAATTTCCAGTTTTGATCACCAAATCCCAATTGCCAAGCGGCATAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

341

Amino Acids

37.69

Weight (kDa)

6.6

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 29 - 274 2.6e-44 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 692
AciI CCGC 1 cut(s) 1009
AclWI GGATC 1 cut(s) 581
AcsI RAATTY 4 cut(s) 14, 148, 521, 910
AcuI CTGAAG 1 cut(s) 668
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 1 cut(s) 641
AjuI GAANNNNNNNTTGG 4 cut(s) 57, 89, 494, 526
AluBI AGCT 7 cut(s) 112, 133, 238, 584, 659, 782, 899
AluI AGCT 7 cut(s) 112, 133, 238, 584, 659, 782, 899
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 3 cut(s) 225, 445, 565
AlwI GGATC 1 cut(s) 581
Ama87I CYCGRG 1 cut(s) 873
AoxI GGCC 1 cut(s) 626
ApeKI GCWGC 5 cut(s) 238, 505, 739, 782, 899
ApoI RAATTY 4 cut(s) 14, 148, 521, 910
AspS9I GGNCC 2 cut(s) 674, 704
AsuC2I CCSGG 1 cut(s) 715
AsuHPI GGTGA 2 cut(s) 526, 980
AvaI CYCGRG 1 cut(s) 873
AvaII GGWCC 2 cut(s) 674, 704
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 5 cut(s) 225, 517, 751, 769, 886
BccI CCATC 1 cut(s) 658
BcgI CGANNNNNNTGC 2 cut(s) 316, 350
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 1 cut(s) 715
BcoDI GTCTC 3 cut(s) 225, 445, 565
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 692
BglI GCCNNNNNGGC 1 cut(s) 718
BisI GCNGC 6 cut(s) 239, 506, 740, 783, 900, 1010
BlpI GCTNAGC 1 cut(s) 895
BlsI GCNGC 6 cut(s) 240, 507, 741, 784, 901, 1011
BmcAI AGTACT 1 cut(s) 535
Bme1390I CCNGG 1 cut(s) 715
Bme18I GGWCC 2 cut(s) 674, 704
BmeT110I CYCGRG 1 cut(s) 873
BmgT120I GGNCC 2 cut(s) 674, 704
BmrFI CCNGG 1 cut(s) 715
BmsI GCATC 3 cut(s) 324, 424, 658
Bpu1102I GCTNAGC 1 cut(s) 895
BpuEI CTTGAG 2 cut(s) 149, 337
BpuMI CCSGG 1 cut(s) 715
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 713
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse1I ACTGG 4 cut(s) 553, 758, 809, 978
Bse3DI GCAATG 1 cut(s) 677
BseDI CCNNGG 1 cut(s) 713
BseGI GGATG 2 cut(s) 651, 673
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMI GCAATG 1 cut(s) 677
BseMII CTCAG 4 cut(s) 441, 650, 855, 909
BseNI ACTGG 4 cut(s) 553, 758, 809, 978
BseXI GCAGC 5 cut(s) 225, 517, 751, 769, 886
BseYI CCCAGC 1 cut(s) 312
BsgI GTGCAG 2 cut(s) 224, 314
BshFI GGCC 1 cut(s) 628
BsiHKAI GWGCWC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 873
BsiSI CCGG 1 cut(s) 715
BslI CCNNNNNNNGG 1 cut(s) 641
BsmAI GTCTC 3 cut(s) 225, 445, 565
BsmI GAATGC 1 cut(s) 966
BsnI GGCC 1 cut(s) 628
Bso31I GGTCTC 1 cut(s) 225
BsoBI CYCGRG 1 cut(s) 873
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 3 cut(s) 258, 586, 985
Bsp1720I GCTNAGC 1 cut(s) 895
BspACI CCGC 1 cut(s) 1009
BspANI GGCC 1 cut(s) 628
BspCNI CTCAG 4 cut(s) 442, 649, 856, 908
BspMI ACCTGC 1 cut(s) 692
BspPI GGATC 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 677
BsrI ACTGG 4 cut(s) 553, 758, 809, 978
BssECI CCNNGG 1 cut(s) 713
BssMI GATC 3 cut(s) 258, 586, 985
Bst6I CTCTTC 3 cut(s) 415, 448, 568
BstC8I GCNNGC 1 cut(s) 657
BstDEI CTNAG 4 cut(s) 450, 636, 864, 895
BstENI CCTNNNNNAGG 1 cut(s) 639
BstF5I GGATG 2 cut(s) 651, 673
BstKTI GATC 3 cut(s) 261, 589, 988
BstMAI GTCTC 3 cut(s) 225, 445, 565
BstMBI GATC 3 cut(s) 258, 586, 985
BstMWI GCNNNNNNNGC 3 cut(s) 590, 718, 1015
BstNSI RCATGY 1 cut(s) 894
BstSCI CCNGG 1 cut(s) 713
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 5 cut(s) 225, 517, 751, 769, 886
BsuRI GGCC 1 cut(s) 628
BtsCI GGATG 2 cut(s) 651, 673
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 90, 261, 816
BveI ACCTGC 1 cut(s) 692
Cac8I GCNNGC 1 cut(s) 657
Cfr13I GGNCC 2 cut(s) 674, 704
Csp6I GTAC 1 cut(s) 534
CviAII CATG 4 cut(s) 469, 490, 891, 904
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 4 cut(s) 450, 636, 864, 895
DpnI GATC 3 cut(s) 260, 588, 987
DpnII GATC 3 cut(s) 258, 586, 985
Eam1104I CTCTTC 3 cut(s) 415, 448, 568
EarI CTCTTC 3 cut(s) 415, 448, 568
Eco147I AGGCCT 1 cut(s) 628
Eco31I GGTCTC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 674, 704
Eco57I CTGAAG 1 cut(s) 668
Eco88I CYCGRG 1 cut(s) 873
EcoNI CCTNNNNNAGG 1 cut(s) 639
EcoO109I RGGNCCY 1 cut(s) 704
FaeI CATG 4 cut(s) 472, 493, 894, 907
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FatI CATG 4 cut(s) 468, 489, 890, 903
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 6 cut(s) 239, 506, 740, 783, 900, 1010
FokI GGATG 2 cut(s) 658, 680
Fsp4HI GCNGC 6 cut(s) 239, 506, 740, 783, 900, 1010
FspBI CTAG 1 cut(s) 480
GluI GCNGC 6 cut(s) 239, 506, 740, 783, 900, 1010
GsaI CCCAGC 1 cut(s) 316
HaeIII GGCC 1 cut(s) 628
HapII CCGG 1 cut(s) 715
Hin1II CATG 4 cut(s) 472, 493, 894, 907
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 8 cut(s) 4, 79, 163, 181, 365, 422, 476, 871
HpaII CCGG 1 cut(s) 715
HphI GGTGA 2 cut(s) 526, 980
Hpy188I TCNGA 6 cut(s) 55, 78, 327, 382, 639, 687
Hpy188III TCNNGA 3 cut(s) 167, 863, 957
HpyAV CCTTC 1 cut(s) 754
HpyCH4V TGCA 7 cut(s) 206, 241, 295, 437, 655, 701, 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 590, 718, 1015
HpyF3I CTNAG 4 cut(s) 450, 636, 864, 895
Hsp92II CATG 4 cut(s) 472, 493, 894, 907
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 3 cut(s) 258, 586, 985
Lsp1109I GCAGC 5 cut(s) 225, 517, 751, 769, 886
LweI GCATC 3 cut(s) 324, 424, 658
MaeI CTAG 1 cut(s) 480
MalI GATC 3 cut(s) 260, 588, 987
MboI GATC 3 cut(s) 258, 586, 985
MboII GAAGA 7 cut(s) 18, 157, 190, 241, 402, 435, 555
MfeI CAATTG 2 cut(s) 276, 999
MhlI GDGCHC 1 cut(s) 92
MlyI GAGTC 2 cut(s) 172, 865
MmeI TCCRAC 2 cut(s) 350, 393
MnlI CCTC 4 cut(s) 386, 645, 741, 869
MseI TTAA 3 cut(s) 300, 525, 795
MslI CAYNNNNRTG 1 cut(s) 825
MspA1I CMGCKG 2 cut(s) 238, 899
MspI CCGG 1 cut(s) 715
MspR9I CCNGG 1 cut(s) 715
MunI CAATTG 2 cut(s) 276, 999
Mva1269I GAATGC 1 cut(s) 966
MwoI GCNNNNNNNGC 3 cut(s) 590, 718, 1015
NciI CCSGG 1 cut(s) 715
NdeII GATC 3 cut(s) 258, 586, 985
NlaIII CATG 4 cut(s) 472, 493, 894, 907
NmeAIII GCCGAG 1 cut(s) 990
NspI RCATGY 1 cut(s) 894
PaeR7I CTCGAG 1 cut(s) 873
PceI AGGCCT 1 cut(s) 628
PctI GAATGC 1 cut(s) 966
PfeI GAWTC 6 cut(s) 4, 79, 181, 365, 422, 476
PkrI GCNGC 6 cut(s) 240, 507, 741, 784, 901, 1011
PleI GAGTC 2 cut(s) 171, 865
PpsI GAGTC 2 cut(s) 171, 865
PpuMI RGGWCCY 1 cut(s) 704
Psp5II RGGWCCY 1 cut(s) 704
PspFI CCCAGC 1 cut(s) 312
PspPI GGNCC 2 cut(s) 674, 704
PspPPI RGGWCCY 1 cut(s) 704
PspXI VCTCGAGB 1 cut(s) 873
PvuII CAGCTG 2 cut(s) 238, 899
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
RseI CAYNNNNRTG 1 cut(s) 825
SaqAI TTAA 3 cut(s) 300, 525, 795
SatI GCNGC 6 cut(s) 239, 506, 740, 783, 900, 1010
Sau3AI GATC 3 cut(s) 258, 586, 985
Sau96I GGNCC 2 cut(s) 674, 704
ScaI AGTACT 1 cut(s) 535
SchI GAGTC 2 cut(s) 172, 865
ScrFI CCNGG 1 cut(s) 715
SduI GDGCHC 1 cut(s) 92
SfaNI GCATC 3 cut(s) 324, 424, 658
SfcI CTRYAG 1 cut(s) 8
Sfr274I CTCGAG 1 cut(s) 873
SinI GGWCC 2 cut(s) 674, 704
SlaI CTCGAG 1 cut(s) 873
SmiMI CAYNNNNRTG 1 cut(s) 825
SmlI CTYRAG 3 cut(s) 128, 352, 873
SmoI CTYRAG 3 cut(s) 128, 352, 873
SseBI AGGCCT 1 cut(s) 628
SsiI CCGC 1 cut(s) 1009
SspMI CTAG 1 cut(s) 480
StuI AGGCCT 1 cut(s) 628
StyD4I CCNGG 1 cut(s) 713
TaqI TCGA 1 cut(s) 874
TatI WGTACW 1 cut(s) 533
TauI GCSGC 1 cut(s) 1012
TfiI GAWTC 6 cut(s) 4, 79, 181, 365, 422, 476
Tru1I TTAA 3 cut(s) 300, 525, 795
Tru9I TTAA 3 cut(s) 300, 525, 795
TscAI CASTG 3 cut(s) 97, 268, 816
TseI GCWGC 5 cut(s) 238, 505, 739, 782, 899
TspDTI ATGAA 6 cut(s) 158, 237, 414, 612, 824, 930
TspRI CASTG 3 cut(s) 97, 268, 816
VpaK11BI GGWCC 2 cut(s) 674, 704
XagI CCTNNNNNAGG 1 cut(s) 639
XapI RAATTY 4 cut(s) 14, 148, 521, 910
XceI RCATGY 1 cut(s) 894
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XhoI CTCGAG 1 cut(s) 873
XspI CTAG 1 cut(s) 480
ZrmI AGTACT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.