Rh6DG412900

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002977
Physical Location & Seq
Forward (+)
59844848 .. 59845819
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG412900.1

Sequence Viewer

Length: 972 bp
ATGGGCTTTTGTTTTTTCACTTTTTTTTTTCTTTCAAAAATTGAAATACTGTATTGTGTATCACACGTTGTTTTTCCCATTTTCGACAATTTACCTGTTTTGAATTCACAAAGTACAGATGACTTGAAGCAGAAGATTTTGAGCACCACCCTTGAACTAGAATCAGTGAAGAGTTTAGCAGCTGAGAGTCAACAAAATGCGAACAAGATACTCAGTCTTTTACAGGTTGCATGTAAAGAAAGAGATGAAGCCAGAAATGAGTTGCGGCAAATCTTAAACAAGATGAACTCTAATTCTGCTCCAATCAAACAGTTTCCTAATGTTGTCCCACCCATTTTCATACCCCCAAAAGCAAACTCAGGCATATCTGAGTCGAACGGCATCATTAATCCCCAATATGACTCTTCTCTTGTTGATTCCTTATTTGATGCACTTTCTTCACCAGATTTCTCGAATATCAACGATTCTAGCCACACGAGTTTTTTGAACCAGCCTTTGACAAAAGAACTTATCGGGACTACTAAGAATATTCCCACTGGTGTAGTGGCCTCTTTTGGTTTGGATGCTAAAATTGATTATATTGCTAAAGGCAAGAGTCTGCCTCAAAAAGGGAAGTTGTTGCAGGCTCTGATGGAAGCCGGTCCATTGCTTAAGACGCTTCTTGTCACCGGGCCTCCTCTGCCCCGGTGGCGGAATCCGCCTACTATGCAGACCCTAGAAATCCCACCCATATCACTTGAAGGTTGCGAGACAATTCTTGCAAGTTTTAATGAGAAACCAGTGACAAAGGCAAGTTCTTCTAACCATCTGAATTCAATATCCTGTCCTGGATTTTCTCAAACATGTTCAGCTGCCATGTGGAATTTCAACAATGTTCCTCCTGTGATATCATGCAAAAGTTCGAGGCCTCTGAATTTGAGTTCATATTTTGATCAACAAATCCCTGCTGCCAAGCAATGTAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

323

Amino Acids

35.42

Weight (kDa)

8.06

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 37 - 256 2.7e-35 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 265, 691, 698
AcsI RAATTY 4 cut(s) 103, 811, 862, 913
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 608, 690
AflII CTTAAG 1 cut(s) 650
AflIII ACRYGT 2 cut(s) 64, 842
AjnI CCWGG 1 cut(s) 826
AluBI AGCT 2 cut(s) 182, 851
AluI AGCT 2 cut(s) 182, 851
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 743
AlwNI CAGNNNCTG 1 cut(s) 628
AoxI GGCC 3 cut(s) 546, 671, 905
ApeKI GCWGC 3 cut(s) 179, 851, 947
ApoI RAATTY 4 cut(s) 103, 811, 862, 913
AseI ATTAAT 1 cut(s) 387
AspS9I GGNCC 2 cut(s) 641, 671
AsuC2I CCSGG 2 cut(s) 670, 685
AsuHPI GGTGA 2 cut(s) 432, 658
AvaII GGWCC 1 cut(s) 641
BauI CACGAG 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 3 cut(s) 191, 838, 934
BccI CCATC 2 cut(s) 625, 813
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 1 cut(s) 828
BclI TGATCA 1 cut(s) 931
BcnI CCSGG 2 cut(s) 670, 685
BcoDI GTCTC 1 cut(s) 743
BfaI CTAG 3 cut(s) 158, 468, 716
BfrI CTTAAG 1 cut(s) 650
BglI GCCNNNNNGGC 1 cut(s) 688
BisI GCNGC 4 cut(s) 180, 266, 852, 948
BlsI GCNGC 4 cut(s) 181, 267, 853, 949
Bme1390I CCNGG 3 cut(s) 670, 685, 828
Bme18I GGWCC 1 cut(s) 641
BmgT120I GGNCC 2 cut(s) 641, 671
BmrFI CCNGG 3 cut(s) 670, 685, 828
BmsI GCATC 3 cut(s) 390, 418, 553
BplI GAGNNNNNCTC 2 cut(s) 586, 618
BpuMI CCSGG 2 cut(s) 670, 685
BsaJI CCNNGG 1 cut(s) 683
BsaXI ACNNNNNCTCC 2 cut(s) 658, 688
Bsc4I CCNNNNNNNGG 2 cut(s) 608, 690
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 2 cut(s) 541, 779
Bse3DI GCAATG 2 cut(s) 644, 962
BseBI CCWGG 1 cut(s) 828
BseDI CCNNGG 1 cut(s) 683
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 2 cut(s) 608, 690
BseMI GCAATG 2 cut(s) 644, 962
BseMII CTCAG 4 cut(s) 174, 226, 360, 372
BseNI ACTGG 2 cut(s) 541, 779
BseRI GAGGAG 1 cut(s) 666
BseXI GCAGC 3 cut(s) 191, 838, 934
BshFI GGCC 3 cut(s) 548, 673, 907
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 3 cut(s) 639, 669, 685
BslFI GGGAC 2 cut(s) 311, 529
BslI CCNNNNNNNGG 2 cut(s) 608, 690
BsmAI GTCTC 1 cut(s) 743
BsmFI GGGAC 2 cut(s) 311, 529
BsnI GGCC 3 cut(s) 548, 673, 907
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 931
BspACI CCGC 3 cut(s) 265, 691, 698
BspANI GGCC 3 cut(s) 548, 673, 907
BspCNI CTCAG 4 cut(s) 175, 225, 361, 371
BspTI CTTAAG 1 cut(s) 650
BsrDI GCAATG 2 cut(s) 644, 962
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 2 cut(s) 541, 779
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 1 cut(s) 683
BssMI GATC 1 cut(s) 931
BssSI CACGAG 1 cut(s) 475
Bst2BI CACGAG 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 2 cut(s) 51, 312
Bst6I CTCTTC 2 cut(s) 164, 409
BstAFI CTTAAG 1 cut(s) 650
BstC8I GCNNGC 1 cut(s) 624
BstDEI CTNAG 5 cut(s) 183, 212, 358, 369, 522
BstENI CCTNNNNNAGG 1 cut(s) 606
BstF5I GGATG 1 cut(s) 568
BstKTI GATC 1 cut(s) 934
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 1 cut(s) 931
BstMWI GCNNNNNNNGC 6 cut(s) 655, 679, 688, 697, 706, 961
BstNI CCWGG 1 cut(s) 828
BstNSI RCATGY 2 cut(s) 234, 846
BstSCI CCNGG 3 cut(s) 668, 683, 826
BstV1I GCAGC 3 cut(s) 191, 838, 934
BsuRI GGCC 3 cut(s) 548, 673, 907
BtsCI GGATG 1 cut(s) 568
BtsIMutI CAGTG 3 cut(s) 171, 534, 786
Cac8I GCNNGC 1 cut(s) 624
CaiI CAGNNNCTG 1 cut(s) 628
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 2 cut(s) 641, 671
CseI GACGC 1 cut(s) 664
Csp6I GTAC 1 cut(s) 114
CviAII CATG 4 cut(s) 231, 843, 856, 891
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 5 cut(s) 183, 212, 358, 369, 522
DpnI GATC 1 cut(s) 933
DpnII GATC 1 cut(s) 931
Eam1104I CTCTTC 2 cut(s) 164, 409
EarI CTCTTC 2 cut(s) 164, 409
EciI GGCGGA 2 cut(s) 687, 706
Eco147I AGGCCT 1 cut(s) 907
Eco32I GATATC 1 cut(s) 888
Eco47I GGWCC 1 cut(s) 641
EcoNI CCTNNNNNAGG 1 cut(s) 606
EcoRI GAATTC 2 cut(s) 103, 811
EcoRII CCWGG 1 cut(s) 826
EcoRV GATATC 1 cut(s) 888
FaeI CATG 4 cut(s) 234, 846, 859, 894
FaqI GGGAC 2 cut(s) 311, 529
FatI CATG 4 cut(s) 230, 842, 855, 890
FbaI TGATCA 1 cut(s) 931
Fnu4HI GCNGC 4 cut(s) 180, 266, 852, 948
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 4 cut(s) 180, 266, 852, 948
FspBI CTAG 3 cut(s) 158, 468, 716
GluI GCNGC 4 cut(s) 180, 266, 852, 948
HaeIII GGCC 3 cut(s) 548, 673, 907
HapII CCGG 3 cut(s) 639, 669, 685
HgaI GACGC 1 cut(s) 664
Hin1II CATG 4 cut(s) 234, 846, 859, 894
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HinfI GANTC 8 cut(s) 161, 187, 371, 401, 416, 464, 595, 694
HpaII CCGG 3 cut(s) 639, 669, 685
HphI GGTGA 2 cut(s) 432, 658
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 4 cut(s) 370, 630, 810, 912
Hpy188III TCNNGA 2 cut(s) 451, 514
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 734
HpyCH4III ACNGT 2 cut(s) 51, 312
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 6 cut(s) 230, 431, 622, 709, 761, 894
HpyF10VI GCNNNNNNNGC 6 cut(s) 655, 679, 688, 697, 706, 961
HpyF3I CTNAG 5 cut(s) 183, 212, 358, 369, 522
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 4 cut(s) 234, 846, 859, 894
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 1 cut(s) 931
LmnI GCTCC 1 cut(s) 304
Lsp1109I GCAGC 3 cut(s) 191, 838, 934
LweI GCATC 3 cut(s) 390, 418, 553
MaeI CTAG 3 cut(s) 158, 468, 716
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 2 cut(s) 664, 781
MalI GATC 1 cut(s) 933
MboI GATC 1 cut(s) 931
MboII GAAGA 5 cut(s) 145, 181, 396, 429, 789
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 9 cut(s) 39, 88, 103, 292, 570, 753, 811, 862, 913
MlyI GAGTC 4 cut(s) 196, 380, 395, 604
MnlI CCTC 7 cut(s) 559, 612, 684, 687, 888, 897, 918
MseI TTAA 4 cut(s) 275, 387, 651, 768
MspA1I CMGCKG 2 cut(s) 182, 851
MspCI CTTAAG 1 cut(s) 650
MspI CCGG 3 cut(s) 639, 669, 685
MspR9I CCNGG 3 cut(s) 670, 685, 828
MvaI CCWGG 1 cut(s) 828
MwoI GCNNNNNNNGC 6 cut(s) 655, 679, 688, 697, 706, 961
NciI CCSGG 2 cut(s) 670, 685
NdeII GATC 1 cut(s) 931
NlaIII CATG 4 cut(s) 234, 846, 859, 894
NmuCI GTSAC 2 cut(s) 664, 781
NspI RCATGY 2 cut(s) 234, 846
PceI AGGCCT 1 cut(s) 907
PciI ACATGT 1 cut(s) 842
PfeI GAWTC 4 cut(s) 161, 416, 464, 694
PfoI TCCNGGA 1 cut(s) 826
PkrI GCNGC 4 cut(s) 181, 267, 853, 949
PleI GAGTC 4 cut(s) 195, 379, 395, 603
PpsI GAGTC 4 cut(s) 195, 379, 395, 603
PscI ACATGT 1 cut(s) 842
PshBI ATTAAT 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 826
PspGI CCWGG 1 cut(s) 826
PspPI GGNCC 2 cut(s) 641, 671
PstNI CAGNNNCTG 1 cut(s) 628
PvuII CAGCTG 2 cut(s) 182, 851
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 4 cut(s) 275, 387, 651, 768
SatI GCNGC 4 cut(s) 180, 266, 852, 948
Sau3AI GATC 1 cut(s) 931
Sau96I GGNCC 2 cut(s) 641, 671
SchI GAGTC 4 cut(s) 196, 380, 395, 604
ScrFI CCNGG 3 cut(s) 670, 685, 828
SduI GDGCHC 1 cut(s) 146
SetI ASST 6 cut(s) 69, 97, 184, 228, 745, 853
SfaNI GCATC 3 cut(s) 390, 418, 553
SinI GGWCC 1 cut(s) 641
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
Sse9I AATT 9 cut(s) 39, 88, 103, 292, 570, 753, 811, 862, 913
SseBI AGGCCT 1 cut(s) 907
SsiI CCGC 3 cut(s) 265, 691, 698
SspI AATATT 1 cut(s) 529
SspMI CTAG 3 cut(s) 158, 468, 716
StuI AGGCCT 1 cut(s) 907
StyD4I CCNGG 3 cut(s) 668, 683, 826
TaaI ACNGT 2 cut(s) 51, 312
TaiI ACGT 1 cut(s) 69
TaqI TCGA 4 cut(s) 84, 374, 452, 902
TasI AATT 9 cut(s) 39, 88, 103, 292, 570, 753, 811, 862, 913
TatI WGTACW 1 cut(s) 113
TauI GCSGC 1 cut(s) 268
TfiI GAWTC 4 cut(s) 161, 416, 464, 694
Tru1I TTAA 4 cut(s) 275, 387, 651, 768
Tru9I TTAA 4 cut(s) 275, 387, 651, 768
TscAI CASTG 3 cut(s) 171, 541, 786
TseFI GTSAC 2 cut(s) 664, 781
TseI GCWGC 3 cut(s) 179, 851, 947
Tsp45I GTSAC 2 cut(s) 664, 781
TspDTI ATGAA 4 cut(s) 261, 299, 328, 912
TspRI CASTG 3 cut(s) 171, 541, 786
Vha464I CTTAAG 1 cut(s) 650
VpaK11BI GGWCC 1 cut(s) 641
VspI ATTAAT 1 cut(s) 387
XagI CCTNNNNNAGG 1 cut(s) 606
XapI RAATTY 4 cut(s) 103, 811, 862, 913
XceI RCATGY 2 cut(s) 234, 846
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XspI CTAG 3 cut(s) 158, 468, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.