Rh6BG420100

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002977
Physical Location & Seq
Forward (+)
64410657 .. 64412390
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG420100.1

Sequence Viewer

Length: 897 bp
ATGGAGGATTTGAGTTCTATATGGATGACTTGTGAAGAGAGTACAGATGACTTGAAGCAGAAGATTTTGAGCACCACCCTTGAACTAGAATCAGTGAAGAGTTTAGCAGCTGAGAGTCAACAAAATGCGAACAAGATACTCAGTCTTTTACAGGTTGCATATAAAGAAAGAGATGAAGCCAGAAATGAGTTGCGGCAAATCATAAACAAGATGAACTCTAATTCTGCTCCAATCAAACAGTTTCCTAATGTTGTCCCACCCATTTTCATACCCCCAAAAGAAAACTCAGGCATATCTGAGTCGAACGGCATCATTAATCCCCAATATGACTCTTCTCTTGTTGATTCCTTATTTGATGCACTTTCTTCCCCAGATTTCTCGAATATCAACGATTCTAGCCACACGAGTTTTTTGAACCAGCCTTTGACAAAAGAACTTATCGGGACTACTAAGAATATTCCCACTGGTGTAGTCTCTTTTGGTTTGGATGCTAAAATTGATTATATTGCTAAAGGCAAGAGTCTGCCTCAAAAAGGGAAGTTGTTGCAGGCTCTGATGGAAGCCGGTCCATTGCTTAAGACGCTTCTTGTCACCGGGCCTCCTCTGCCCCGGTGGCGGAATCCGCCTACTATGCAGACCCTAGAAATCCCACCCATATCACTTGAAGGTTGCGAGGCAATTCTTGCAAGTTTTAATGAGAAACCAGTGACAAAGGCATGTTCTTCTAACCATCTGAATTCAATATCCTGTCCTGGATTTTCTCAAACATGTTCAGCTGCCATATGGAATTTCAACAATGTTCCTCCTGTGATATCATGCAAAAGTTCGAGGCCGCTGAATTCGAGTTCATATTTTGATCAACAAATCCCTGCTGCCAAGCAATGTAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

298

Amino Acids

32.62

Weight (kDa)

5.82

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 13 - 242 9.2e-36 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 193, 616, 623, 833
AcsI RAATTY 3 cut(s) 736, 787, 838
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 533, 615
AflII CTTAAG 1 cut(s) 575
AflIII ACRYGT 1 cut(s) 767
AgsI TTSAA 7 cut(s) 55, 83, 415, 665, 741, 793, 893
AjnI CCWGG 1 cut(s) 751
AluBI AGCT 2 cut(s) 110, 776
AluI AGCT 2 cut(s) 110, 776
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 478
AlwNI CAGNNNCTG 1 cut(s) 553
AoxI GGCC 2 cut(s) 596, 830
ApeKI GCWGC 3 cut(s) 107, 776, 872
ApoI RAATTY 3 cut(s) 736, 787, 838
AseI ATTAAT 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 566, 596
AsuC2I CCSGG 2 cut(s) 595, 610
AsuHPI GGTGA 1 cut(s) 583
AvaII GGWCC 1 cut(s) 566
BauI CACGAG 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 3 cut(s) 119, 763, 859
BccI CCATC 2 cut(s) 550, 738
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 753
BclI TGATCA 1 cut(s) 856
BcnI CCSGG 2 cut(s) 595, 610
BcoDI GTCTC 1 cut(s) 478
BfaI CTAG 3 cut(s) 86, 396, 641
BfrI CTTAAG 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 613
BisI GCNGC 5 cut(s) 108, 194, 777, 833, 873
BlsI GCNGC 5 cut(s) 109, 195, 778, 834, 874
Bme1390I CCNGG 3 cut(s) 595, 610, 753
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 2 cut(s) 566, 596
BmrFI CCNGG 3 cut(s) 595, 610, 753
BmsI GCATC 3 cut(s) 318, 346, 478
BplI GAGNNNNNCTC 2 cut(s) 511, 543
BpuMI CCSGG 2 cut(s) 595, 610
BsaJI CCNNGG 1 cut(s) 608
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 533, 615
Bse118I RCCGGY 1 cut(s) 563
Bse1I ACTGG 2 cut(s) 469, 704
Bse3DI GCAATG 2 cut(s) 569, 887
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 1 cut(s) 608
BseGI GGATG 2 cut(s) 30, 493
BseLI CCNNNNNNNGG 2 cut(s) 533, 615
BseMI GCAATG 2 cut(s) 569, 887
BseMII CTCAG 4 cut(s) 102, 154, 288, 300
BseNI ACTGG 2 cut(s) 469, 704
BseRI GAGGAG 1 cut(s) 591
BseXI GCAGC 3 cut(s) 119, 763, 859
BshFI GGCC 2 cut(s) 598, 832
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 3 cut(s) 564, 594, 610
BslFI GGGAC 2 cut(s) 239, 457
BslI CCNNNNNNNGG 2 cut(s) 533, 615
BsmAI GTCTC 1 cut(s) 478
BsmFI GGGAC 2 cut(s) 239, 457
BsnI GGCC 2 cut(s) 598, 832
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 856
BspACI CCGC 4 cut(s) 193, 616, 623, 833
BspANI GGCC 2 cut(s) 598, 832
BspCNI CTCAG 4 cut(s) 103, 153, 289, 299
BspTI CTTAAG 1 cut(s) 575
BsrDI GCAATG 2 cut(s) 569, 887
BsrFI RCCGGY 1 cut(s) 563
BsrI ACTGG 2 cut(s) 469, 704
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 1 cut(s) 608
BssMI GATC 1 cut(s) 856
BssSI CACGAG 1 cut(s) 403
Bst2BI CACGAG 1 cut(s) 403
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 3 cut(s) 30, 92, 337
BstAFI CTTAAG 1 cut(s) 575
BstAPI GCANNNNNTGC 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 5 cut(s) 111, 140, 286, 297, 450
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 30, 493
BstKTI GATC 1 cut(s) 859
BstMAI GTCTC 1 cut(s) 478
BstMBI GATC 1 cut(s) 856
BstMWI GCNNNNNNNGC 7 cut(s) 580, 604, 613, 622, 631, 683, 886
BstNI CCWGG 1 cut(s) 753
BstNSI RCATGY 2 cut(s) 720, 771
BstSCI CCNGG 3 cut(s) 593, 608, 751
BstV1I GCAGC 3 cut(s) 119, 763, 859
BsuRI GGCC 2 cut(s) 598, 832
BtsCI GGATG 2 cut(s) 30, 493
BtsIMutI CAGTG 3 cut(s) 99, 462, 711
Cac8I GCNNGC 1 cut(s) 549
CaiI CAGNNNCTG 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 563
Cfr13I GGNCC 2 cut(s) 566, 596
CseI GACGC 1 cut(s) 589
Csp6I GTAC 1 cut(s) 42
CviAII CATG 3 cut(s) 717, 768, 816
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 5 cut(s) 111, 140, 286, 297, 450
DpnI GATC 1 cut(s) 858
DpnII GATC 1 cut(s) 856
Eam1104I CTCTTC 3 cut(s) 30, 92, 337
EarI CTCTTC 3 cut(s) 30, 92, 337
EciI GGCGGA 2 cut(s) 612, 631
Eco32I GATATC 1 cut(s) 813
Eco47I GGWCC 1 cut(s) 566
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoRI GAATTC 2 cut(s) 736, 838
EcoRII CCWGG 1 cut(s) 751
EcoRV GATATC 1 cut(s) 813
FaeI CATG 3 cut(s) 720, 771, 819
FaqI GGGAC 2 cut(s) 239, 457
FatI CATG 3 cut(s) 716, 767, 815
FauNDI CATATG 1 cut(s) 782
FbaI TGATCA 1 cut(s) 856
Fnu4HI GCNGC 5 cut(s) 108, 194, 777, 833, 873
FokI GGATG 2 cut(s) 37, 500
Fsp4HI GCNGC 5 cut(s) 108, 194, 777, 833, 873
FspBI CTAG 3 cut(s) 86, 396, 641
GluI GCNGC 5 cut(s) 108, 194, 777, 833, 873
HaeIII GGCC 2 cut(s) 598, 832
HapII CCGG 3 cut(s) 564, 594, 610
HgaI GACGC 1 cut(s) 589
Hin1II CATG 3 cut(s) 720, 771, 819
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
HinfI GANTC 8 cut(s) 89, 115, 299, 329, 344, 392, 520, 619
HpaII CCGG 3 cut(s) 564, 594, 610
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 3 cut(s) 298, 555, 735
Hpy188III TCNNGA 2 cut(s) 379, 442
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 659
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4V TGCA 6 cut(s) 158, 359, 547, 634, 686, 819
HpyF10VI GCNNNNNNNGC 7 cut(s) 580, 604, 613, 622, 631, 683, 886
HpyF3I CTNAG 5 cut(s) 111, 140, 286, 297, 450
Hsp92II CATG 3 cut(s) 720, 771, 819
Ksp22I TGATCA 1 cut(s) 856
Kzo9I GATC 1 cut(s) 856
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 3 cut(s) 119, 763, 859
LweI GCATC 3 cut(s) 318, 346, 478
MaeI CTAG 3 cut(s) 86, 396, 641
MaeIII GTNAC 2 cut(s) 589, 706
MalI GATC 1 cut(s) 858
MboI GATC 1 cut(s) 856
MboII GAAGA 6 cut(s) 47, 73, 109, 324, 357, 714
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 6 cut(s) 220, 495, 678, 736, 787, 838
MlyI GAGTC 4 cut(s) 124, 308, 323, 529
MnlI CCTC 6 cut(s) 537, 609, 612, 667, 813, 822
MseI TTAA 3 cut(s) 315, 576, 693
MspA1I CMGCKG 3 cut(s) 110, 776, 835
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 3 cut(s) 564, 594, 610
MspR9I CCNGG 3 cut(s) 595, 610, 753
MvaI CCWGG 1 cut(s) 753
MwoI GCNNNNNNNGC 7 cut(s) 580, 604, 613, 622, 631, 683, 886
NciI CCSGG 2 cut(s) 595, 610
NdeI CATATG 1 cut(s) 782
NdeII GATC 1 cut(s) 856
NlaIII CATG 3 cut(s) 720, 771, 819
NmuCI GTSAC 2 cut(s) 589, 706
NspI RCATGY 2 cut(s) 720, 771
PciI ACATGT 1 cut(s) 767
PfeI GAWTC 4 cut(s) 89, 344, 392, 619
PfoI TCCNGGA 1 cut(s) 751
PkrI GCNGC 5 cut(s) 109, 195, 778, 834, 874
PleI GAGTC 4 cut(s) 123, 307, 323, 528
PpsI GAGTC 4 cut(s) 123, 307, 323, 528
PscI ACATGT 1 cut(s) 767
PshBI ATTAAT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 751
PspGI CCWGG 1 cut(s) 751
PspPI GGNCC 2 cut(s) 566, 596
PstNI CAGNNNCTG 1 cut(s) 553
PvuII CAGCTG 2 cut(s) 110, 776
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 3 cut(s) 315, 576, 693
SatI GCNGC 5 cut(s) 108, 194, 777, 833, 873
Sau3AI GATC 1 cut(s) 856
Sau96I GGNCC 2 cut(s) 566, 596
SchI GAGTC 4 cut(s) 124, 308, 323, 529
ScrFI CCNGG 3 cut(s) 595, 610, 753
SduI GDGCHC 1 cut(s) 74
SetI ASST 4 cut(s) 112, 156, 670, 778
SfaNI GCATC 3 cut(s) 318, 346, 478
SinI GGWCC 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 6 cut(s) 220, 495, 678, 736, 787, 838
SsiI CCGC 4 cut(s) 193, 616, 623, 833
SspI AATATT 1 cut(s) 457
SspMI CTAG 3 cut(s) 86, 396, 641
StyD4I CCNGG 3 cut(s) 593, 608, 751
TaaI ACNGT 1 cut(s) 240
TaqI TCGA 4 cut(s) 302, 380, 827, 842
TasI AATT 6 cut(s) 220, 495, 678, 736, 787, 838
TatI WGTACW 1 cut(s) 41
TauI GCSGC 2 cut(s) 196, 835
TfiI GAWTC 4 cut(s) 89, 344, 392, 619
Tru1I TTAA 3 cut(s) 315, 576, 693
Tru9I TTAA 3 cut(s) 315, 576, 693
TscAI CASTG 3 cut(s) 99, 469, 711
TseFI GTSAC 2 cut(s) 589, 706
TseI GCWGC 3 cut(s) 107, 776, 872
Tsp45I GTSAC 2 cut(s) 589, 706
TspDTI ATGAA 4 cut(s) 189, 227, 256, 837
TspRI CASTG 3 cut(s) 99, 469, 711
Vha464I CTTAAG 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 566
VspI ATTAAT 1 cut(s) 315
XagI CCTNNNNNAGG 1 cut(s) 531
XapI RAATTY 3 cut(s) 736, 787, 838
XceI RCATGY 2 cut(s) 720, 771
XspI CTAG 3 cut(s) 86, 396, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.