RLG00000011292

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002977
Physical Location & Seq
Reverse (-)
8269364 .. 8271116
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011292

Sequence Viewer

Length: 912 bp
ATGGAGGATTTGAGTTCTATATGGATGACTTGTGAAGAGAGTACAGATGACTTGAAGCAGAAGATTTTGAGCACCACCCTTGAACTAGAATCAGTGAAGAGTTTAGCAGCTGAGAGTCAACAAAATGCGAACAAGATACTCAGTCTTTTACAGGTTGCATATAAAGAAAGAGATGAAGCCAGAAATGAGTTGCGGCAAATCTTAAACAAGATGAACCCCAATTCTGCTCCAATCGAACAGTTTCCTAATGTTGTCCCACCCATTTTCATACCCCCAAAAGCAAACTCAGGCATATCTGAGTCGAACGGCATCATTAATCCCCAATATAATCCTCAATATGACTCTTTTCTTGTTGATTCTTTATTTGATGCACTTTCTTCACCAGATTTCTCGAATATTAACAACTCTAGCCGCACGAATTTTTTGAACCAGCCTTTGACAGAAGAACTTATCGGGACTACTAAGAATACTCCCACTGGTTTAGTGGCCTCTTTTGGTTTGGATGCTAAAATAGATTATATTGCTAAAGGCAAGAGTCTGCCTCAAAAAGGGAAGTTGTTGCAGGCTCTGATGGAAGCCGGTCCATTGCTTAAGACGCTTCTTGTCACCGGGCCTCCTCTGCCTCGATGGCGGAATCCTCCTACCATGCAGACCCTAGAAATCCCACCTATATCACTCGAAGGTTGTGAGACAATTCTTGCAAGTTTTAATGAGAAACCAGTGACAATGGCATGTTCTTCTAACCATCTAAATTCAATATCCTGTCCTGGATTTTCTCAAACATGTTCAGCTGCCATGTGGAATTTCAACAATGTTCCTCCGGTGATATCATGCAAAAGTTCGAGGCCACTGAATTCGAGTTCATATTTTGATCAACAAATCCCTGCTGCGAAGCAATGTAGGCTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

304

Amino Acids

33.31

Weight (kDa)

5.24

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 13 - 247 1.2e-33 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 193, 412, 631
AcsI RAATTY 4 cut(s) 418, 751, 802, 853
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 548
AflII CTTAAG 1 cut(s) 590
AflIII ACRYGT 1 cut(s) 782
AgsI TTSAA 5 cut(s) 55, 83, 427, 756, 808
AjnI CCWGG 1 cut(s) 766
AluBI AGCT 2 cut(s) 110, 791
AluI AGCT 2 cut(s) 110, 791
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 683
AlwNI CAGNNNCTG 1 cut(s) 568
AoxI GGCC 3 cut(s) 486, 611, 845
ApeKI GCWGC 4 cut(s) 107, 791, 887, 904
ApoI RAATTY 4 cut(s) 418, 751, 802, 853
AseI ATTAAT 1 cut(s) 315
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 581, 611
AsuC2I CCSGG 1 cut(s) 610
AsuHPI GGTGA 3 cut(s) 372, 598, 835
AvaII GGWCC 1 cut(s) 581
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 4 cut(s) 119, 778, 874, 891
BccI CCATC 3 cut(s) 565, 621, 753
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 768
BclI TGATCA 1 cut(s) 871
BcnI CCSGG 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 683
BfaI CTAG 3 cut(s) 86, 408, 656
BfrI CTTAAG 1 cut(s) 590
BglI GCCNNNNNGGC 1 cut(s) 628
BisI GCNGC 6 cut(s) 108, 194, 412, 792, 888, 905
BlsI GCNGC 6 cut(s) 109, 195, 413, 793, 889, 906
Bme1390I CCNGG 2 cut(s) 610, 768
Bme18I GGWCC 1 cut(s) 581
BmgT120I GGNCC 2 cut(s) 581, 611
BmrFI CCNGG 2 cut(s) 610, 768
BmsI GCATC 3 cut(s) 318, 358, 493
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BpuMI CCSGG 1 cut(s) 610
BsaWI WCCGGW 1 cut(s) 820
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 2 cut(s) 481, 719
Bse3DI GCAATG 2 cut(s) 584, 902
BseBI CCWGG 1 cut(s) 768
BseGI GGATG 2 cut(s) 30, 508
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMI GCAATG 2 cut(s) 584, 902
BseMII CTCAG 4 cut(s) 102, 154, 288, 300
BseNI ACTGG 2 cut(s) 481, 719
BseRI GAGGAG 1 cut(s) 606
BseXI GCAGC 4 cut(s) 119, 778, 874, 891
BshFI GGCC 3 cut(s) 488, 613, 847
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 3 cut(s) 579, 609, 821
BslFI GGGAC 2 cut(s) 239, 469
BslI CCNNNNNNNGG 1 cut(s) 548
BsmAI GTCTC 1 cut(s) 683
BsmFI GGGAC 2 cut(s) 239, 469
BsnI GGCC 3 cut(s) 488, 613, 847
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 871
BspACI CCGC 3 cut(s) 193, 412, 631
BspANI GGCC 3 cut(s) 488, 613, 847
BspCNI CTCAG 4 cut(s) 103, 153, 289, 299
BspTI CTTAAG 1 cut(s) 590
BsrDI GCAATG 2 cut(s) 584, 902
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 2 cut(s) 481, 719
BssAI RCCGGY 1 cut(s) 578
BssMI GATC 1 cut(s) 871
Bst2UI CCWGG 1 cut(s) 768
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 2 cut(s) 30, 92
BstAFI CTTAAG 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 5 cut(s) 111, 140, 286, 297, 462
BstENI CCTNNNNNAGG 1 cut(s) 546
BstF5I GGATG 2 cut(s) 30, 508
BstKTI GATC 1 cut(s) 874
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 1 cut(s) 871
BstMWI GCNNNNNNNGC 4 cut(s) 595, 619, 628, 901
BstNI CCWGG 1 cut(s) 768
BstNSI RCATGY 2 cut(s) 735, 786
BstSCI CCNGG 2 cut(s) 608, 766
BstV1I GCAGC 4 cut(s) 119, 778, 874, 891
BsuRI GGCC 3 cut(s) 488, 613, 847
BtsCI GGATG 2 cut(s) 30, 508
BtsIMutI CAGTG 4 cut(s) 99, 474, 726, 848
Cac8I GCNNGC 1 cut(s) 564
CaiI CAGNNNCTG 1 cut(s) 568
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 2 cut(s) 581, 611
CseI GACGC 1 cut(s) 604
Csp6I GTAC 1 cut(s) 42
CviAII CATG 5 cut(s) 646, 732, 783, 796, 831
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 5 cut(s) 111, 140, 286, 297, 462
DpnI GATC 1 cut(s) 873
DpnII GATC 1 cut(s) 871
Eam1104I CTCTTC 2 cut(s) 30, 92
EarI CTCTTC 2 cut(s) 30, 92
EciI GGCGGA 1 cut(s) 646
Eco32I GATATC 1 cut(s) 828
Eco47I GGWCC 1 cut(s) 581
EcoNI CCTNNNNNAGG 1 cut(s) 546
EcoRI GAATTC 1 cut(s) 853
EcoRII CCWGG 1 cut(s) 766
EcoRV GATATC 1 cut(s) 828
FaeI CATG 5 cut(s) 649, 735, 786, 799, 834
FaqI GGGAC 2 cut(s) 239, 469
FatI CATG 5 cut(s) 645, 731, 782, 795, 830
FbaI TGATCA 1 cut(s) 871
Fnu4HI GCNGC 6 cut(s) 108, 194, 412, 792, 888, 905
FokI GGATG 2 cut(s) 37, 515
Fsp4HI GCNGC 6 cut(s) 108, 194, 412, 792, 888, 905
FspBI CTAG 3 cut(s) 86, 408, 656
GluI GCNGC 6 cut(s) 108, 194, 412, 792, 888, 905
HaeIII GGCC 3 cut(s) 488, 613, 847
HapII CCGG 3 cut(s) 579, 609, 821
HgaI GACGC 1 cut(s) 604
Hin1II CATG 5 cut(s) 649, 735, 786, 799, 834
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
HinfI GANTC 7 cut(s) 89, 115, 299, 341, 356, 535, 634
HpaII CCGG 3 cut(s) 579, 609, 821
HphI GGTGA 3 cut(s) 372, 598, 835
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 298, 570
Hpy188III TCNNGA 2 cut(s) 391, 454
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 674
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4V TGCA 7 cut(s) 158, 371, 562, 649, 701, 834, 907
HpyF10VI GCNNNNNNNGC 4 cut(s) 595, 619, 628, 901
HpyF3I CTNAG 5 cut(s) 111, 140, 286, 297, 462
Hsp92II CATG 5 cut(s) 649, 735, 786, 799, 834
Ksp22I TGATCA 1 cut(s) 871
Kzo9I GATC 1 cut(s) 871
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 4 cut(s) 119, 778, 874, 891
LweI GCATC 3 cut(s) 318, 358, 493
MaeI CTAG 3 cut(s) 86, 408, 656
MaeIII GTNAC 2 cut(s) 604, 721
MalI GATC 1 cut(s) 873
MboI GATC 1 cut(s) 871
MboII GAAGA 6 cut(s) 47, 73, 109, 369, 455, 729
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 6 cut(s) 220, 418, 693, 751, 802, 853
MlyI GAGTC 4 cut(s) 124, 308, 335, 544
MnlI CCTC 9 cut(s) 342, 499, 552, 624, 627, 633, 648, 828, 837
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 5 cut(s) 203, 315, 399, 591, 708
MspA1I CMGCKG 2 cut(s) 110, 791
MspCI CTTAAG 1 cut(s) 590
MspI CCGG 3 cut(s) 579, 609, 821
MspR9I CCNGG 2 cut(s) 610, 768
MvaI CCWGG 1 cut(s) 768
MwoI GCNNNNNNNGC 4 cut(s) 595, 619, 628, 901
NciI CCSGG 1 cut(s) 610
NdeII GATC 1 cut(s) 871
NlaIII CATG 5 cut(s) 649, 735, 786, 799, 834
NmuCI GTSAC 2 cut(s) 604, 721
NspI RCATGY 2 cut(s) 735, 786
PciI ACATGT 1 cut(s) 782
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 3 cut(s) 89, 356, 634
PfoI TCCNGGA 1 cut(s) 766
PkrI GCNGC 6 cut(s) 109, 195, 413, 793, 889, 906
PleI GAGTC 4 cut(s) 123, 307, 335, 543
PpsI GAGTC 4 cut(s) 123, 307, 335, 543
PscI ACATGT 1 cut(s) 782
PshBI ATTAAT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 766
PspGI CCWGG 1 cut(s) 766
PspPI GGNCC 2 cut(s) 581, 611
PstNI CAGNNNCTG 1 cut(s) 568
PvuII CAGCTG 2 cut(s) 110, 791
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 5 cut(s) 203, 315, 399, 591, 708
SatI GCNGC 6 cut(s) 108, 194, 412, 792, 888, 905
Sau3AI GATC 1 cut(s) 871
Sau96I GGNCC 2 cut(s) 581, 611
SchI GAGTC 4 cut(s) 124, 308, 335, 544
ScrFI CCNGG 2 cut(s) 610, 768
SduI GDGCHC 1 cut(s) 74
SetI ASST 5 cut(s) 112, 156, 670, 685, 793
SfaNI GCATC 3 cut(s) 318, 358, 493
SinI GGWCC 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 6 cut(s) 220, 418, 693, 751, 802, 853
SsiI CCGC 3 cut(s) 193, 412, 631
SspI AATATT 1 cut(s) 397
SspMI CTAG 3 cut(s) 86, 408, 656
StyD4I CCNGG 2 cut(s) 608, 766
TaaI ACNGT 1 cut(s) 240
TaqI TCGA 7 cut(s) 234, 302, 392, 625, 678, 842, 857
TasI AATT 6 cut(s) 220, 418, 693, 751, 802, 853
TatI WGTACW 1 cut(s) 41
TauI GCSGC 2 cut(s) 196, 414
TfiI GAWTC 3 cut(s) 89, 356, 634
Tru1I TTAA 5 cut(s) 203, 315, 399, 591, 708
Tru9I TTAA 5 cut(s) 203, 315, 399, 591, 708
TscAI CASTG 4 cut(s) 99, 481, 726, 855
TseFI GTSAC 2 cut(s) 604, 721
TseI GCWGC 4 cut(s) 107, 791, 887, 904
Tsp45I GTSAC 2 cut(s) 604, 721
TspDTI ATGAA 4 cut(s) 189, 227, 256, 852
TspRI CASTG 4 cut(s) 99, 481, 726, 855
Vha464I CTTAAG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 581
VspI ATTAAT 1 cut(s) 315
XagI CCTNNNNNAGG 1 cut(s) 546
XapI RAATTY 4 cut(s) 418, 751, 802, 853
XceI RCATGY 2 cut(s) 735, 786
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 3 cut(s) 86, 408, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.