Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002977

Physical Location & Seq

Genomic Coordinates Forward (+)

6666129 .. 6668002

Gene Structure 1874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTGGGTTCTCTCATTTTTCTTCTCCCTTCTCTTCCCTTCTTCCATTTTCTCACCAGAGGTTGAAAGTCTTCCAATGGAGGAACTGGGTTCTCTGTGGACTACTGATCCTGAGAGCGCTGAGGAGCTGAAGCAGAAGCTTCTGTACGCAACCCTTGAGCTAGAATCTGTAAAAACACGCGCAACGGATGAAATCCGGAAACGCGAGGAGAATGTGAAGAAACTAGTCAATCTTCTAAACGTTGCATACAAAGAAAGACAAGATGCCGTGGATCAGCTACAAAAGTTCATAAACAAGATCATGCCTTCAAGTCCAATGGAACTCCCCCTCAACATGTTTCCTCATGAAAGTACACTTTTGCTTCCCACCAAAGCAAACTCAAGCATAACTGAATCCAACAGCCTCTCTGAAACCTACAATCCCCAAAAATCGCACGCCTCTTCCTCTGTGGACTCCTTATTCGATGCGGTTTCTTCACCTGAGTTTTCGAACATGAACATGGCTGAATCTGGCTGCATTCCTTTTGTGAAGCAGCAGCCTCTGGTGCAAGAATATAATGGCATTGTATCTGCTGGTGTAGTCTCTTCACGGTGGGATGATCAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1635

Protein Analysis

203

Amino Acids

22.75

Weight (kDa)

4.67

Isoelectric Point (pI)

62.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28690 AT5G59760
fragaria_vesca	FvH4_3g34910 FvH4_3g34910
malus_domestica	MD03G1100400.v1.1 MD11G1114400.v1.1
prunus_persica	Prupe.6G085300_v2.0.a1
pyrus_communis	pycom03g08250 pycom11g09620
rosa_chinensis	RchiOBHm_Chr1g0380111 RchiOBHm_Chr5g0062781 RchiOBHm_Chr6g0300901
rosa_laevigata	RLG00000011292 RLG00000026330 RLG00000035577
rosa_multiflora	Rmu_sc0001232.1_g000013 Rmu_sc0004576.1_g000006 Rmu_sc0006254.1_g000002 Rmu_ssc0000472.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017840 Rroxscaffold_4G00279670 Rroxscaffold_7G00167330
rosa_rugosa	Rorug01G0417500 Rorug05G0351600
rosa_samantha	Rh1AG442700 Rh1BG397800 Rh1CG411300 Rh1DG428600 Rh5AG412600 Rh5BG426500 Rh5CG450600 Rh5DG440400 Rh6AG412900 Rh6BG420100 Rh6CG427600 Rh6DG412900
rosa_wichuraiana	Rw1G038440 Rw5G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	180, 204
AccIII	TCCGGA	1 cut(s)	195
AciI	CCGC	1 cut(s)	467
AclI	AACGTT	1 cut(s)	240
AclWI	GGATC	2 cut(s)	101, 279
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	2 cut(s)	146, 352
AfeI	AGCGCT	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	2 cut(s)	65, 309
AhlI	ACTAGT	1 cut(s)	223
AluBI	AGCT	4 cut(s)	127, 139, 160, 277
AluI	AGCT	4 cut(s)	127, 139, 160, 277
Alw26I	GTCTC	1 cut(s)	586
AlwI	GGATC	2 cut(s)	101, 279
AlwNI	CAGNNNCTG	1 cut(s)	541
Aor13HI	TCCGGA	1 cut(s)	195
Aor51HI	AGCGCT	1 cut(s)	118
ApeKI	GCWGC	3 cut(s)	513, 532, 535
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	2 cut(s)	119, 182
AsuHPI	GGTGA	2 cut(s)	45, 468
AsuII	TTCGAA	1 cut(s)	488
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BbsI	GAAGAC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	500, 544, 547
BceAI	ACGGC	1 cut(s)	251
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	586
BcuI	ACTAGT	1 cut(s)	223
BfaI	CTAG	2 cut(s)	161, 224
BfoI	RGCGCY	1 cut(s)	120
BisI	GCNGC	3 cut(s)	514, 533, 536
BlsI	GCNGC	3 cut(s)	515, 534, 537
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	253, 454
BmuI	ACTGGG	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	488
BpuEI	CTTGAG	2 cut(s)	176, 364
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	90
BseAI	TCCGGA	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	193, 601
BseMII	CTCAG	3 cut(s)	102, 111, 471
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	2 cut(s)	137, 221
BseXI	GCAGC	3 cut(s)	500, 544, 547
Bsh1236I	CGCG	2 cut(s)	180, 204
BsiSI	CCGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	586
BsmI	GAATGC	1 cut(s)	516
Bsp119I	TTCGAA	1 cut(s)	488
Bsp13I	TCCGGA	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	106, 271, 297, 598
BspACI	CCGC	1 cut(s)	467
BspCNI	CTCAG	3 cut(s)	103, 112, 472
BspEI	TCCGGA	1 cut(s)	195
BspFNI	CGCG	2 cut(s)	180, 204
BspHI	TCATGA	1 cut(s)	343
BspPI	GGATC	2 cut(s)	101, 279
BspT104I	TTCGAA	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	4 cut(s)	106, 271, 297, 598
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	3 cut(s)	38, 445, 589
BstBI	TTCGAA	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	111, 120, 480
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	193, 601
BstFNI	CGCG	2 cut(s)	180, 204
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	2 cut(s)	119, 182
BstKTI	GATC	4 cut(s)	109, 274, 300, 601
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	4 cut(s)	106, 271, 297, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	337
BstUI	CGCG	2 cut(s)	180, 204
BstV1I	GCAGC	3 cut(s)	500, 544, 547
BstV2I	GAAGAC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	193, 601
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	541
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	2 cut(s)	119, 182
Csp6I	GTAC	2 cut(s)	145, 351
CviAII	CATG	5 cut(s)	301, 334, 344, 493, 499
CviJI	RGCY	8 cut(s)	127, 139, 160, 277, 402, 503, 513, 538
CviKI_1	RGCY	8 cut(s)	127, 139, 160, 277, 402, 503, 513, 538
CviQI	GTAC	2 cut(s)	145, 351
DdeI	CTNAG	3 cut(s)	111, 120, 480
DpnI	GATC	4 cut(s)	108, 273, 299, 600
DpnII	GATC	4 cut(s)	106, 271, 297, 598
Eam1104I	CTCTTC	3 cut(s)	38, 445, 589
EarI	CTCTTC	3 cut(s)	38, 445, 589
Eco47III	AGCGCT	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	149
FaeI	CATG	5 cut(s)	304, 337, 347, 496, 502
FaiI	YATR	9 cut(s)	247, 290, 302, 335, 345, 386, 494, 500, 555
FatI	CATG	5 cut(s)	300, 333, 343, 492, 498
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	3 cut(s)	514, 533, 536
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	3 cut(s)	514, 533, 536
FspBI	CTAG	2 cut(s)	161, 224
GlaI	GCGC	2 cut(s)	118, 181
GluI	GCNGC	3 cut(s)	514, 533, 536
HaeII	RGCGCY	1 cut(s)	120
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	2 cut(s)	119, 182
Hin1II	CATG	5 cut(s)	304, 337, 347, 496, 502
Hin6I	GCGC	2 cut(s)	117, 180
HinP1I	GCGC	2 cut(s)	117, 180
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	4 cut(s)	164, 392, 452, 506
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	2 cut(s)	45, 468
Hpy166II	GTNNAC	3 cut(s)	99, 353, 451
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	3 cut(s)	110, 196, 344
Hpy8I	GTNNAC	3 cut(s)	99, 353, 451
HpyAV	CCTTC	3 cut(s)	38, 48, 315
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	245, 516, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	3 cut(s)	111, 120, 480
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	304, 337, 347, 496, 502
HspAI	GCGC	2 cut(s)	117, 180
Kpn2I	TCCGGA	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	4 cut(s)	106, 271, 297, 598
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	8 cut(s)	69, 71, 123, 209, 492, 495, 527, 558
Lsp1109I	GCAGC	3 cut(s)	500, 544, 547
LweI	GCATC	2 cut(s)	253, 454
MaeI	CTAG	2 cut(s)	161, 224
MaeII	ACGT	1 cut(s)	240
MalI	GATC	4 cut(s)	108, 273, 299, 600
MboI	GATC	4 cut(s)	106, 271, 297, 598
MboII	GAAGA	9 cut(s)	13, 25, 33, 62, 224, 229, 432, 465, 576
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	420
MroI	TCCGGA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	497
MspI	CCGG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	516
MvnI	CGCG	2 cut(s)	180, 204
MwoI	GCNNNNNNNGC	1 cut(s)	544
NdeII	GATC	4 cut(s)	106, 271, 297, 598
NlaIII	CATG	5 cut(s)	304, 337, 347, 496, 502
NspI	RCATGY	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	488
PagI	TCATGA	1 cut(s)	343
PciI	ACATGT	1 cut(s)	333
PctI	GAATGC	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	164, 392, 506
PkrI	GCNGC	3 cut(s)	515, 534, 537
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PscI	ACATGT	1 cut(s)	333
Psp1406I	AACGTT	1 cut(s)	240
PstNI	CAGNNNCTG	1 cut(s)	541
RsaI	GTAC	2 cut(s)	146, 352
RsaNI	GTAC	2 cut(s)	145, 351
RseI	CAYNNNNRTG	1 cut(s)	497
SatI	GCNGC	3 cut(s)	514, 533, 536
Sau3AI	GATC	4 cut(s)	106, 271, 297, 598
SchI	GAGTC	1 cut(s)	446
SetI	ASST	9 cut(s)	63, 129, 141, 162, 243, 279, 416, 481, 608
SfaNI	GCATC	2 cut(s)	253, 454
SfuI	TTCGAA	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	155, 379
SmoI	CTYRAG	2 cut(s)	155, 379
SpeI	ACTAGT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	2 cut(s)	161, 224
TaaI	ACNGT	1 cut(s)	591
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	462, 488
TatI	WGTACW	1 cut(s)	350
TfiI	GAWTC	3 cut(s)	164, 392, 506
TseI	GCWGC	3 cut(s)	513, 532, 535
TspDTI	ATGAA	4 cut(s)	204, 277, 360, 509
TspGWI	ACGGA	1 cut(s)	200
XceI	RCATGY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	2 cut(s)	161, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.