FvH4_3g34910

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002977
Physical Location & Seq
Reverse (-)
30143529 .. 30146305
2777 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34910.t2

Sequence Viewer

Length: 978 bp
ATGGAGGACATGGGTTCTTTGTGGACTACCTATCATGAGAGCGCTGATGATTTGAAGAAGAAGCTTCTTTACACTACCCTTGAACTTGATACAATGAAGAATTTGGCAGCAGAGAGTCAAGAAAATGTGAAGAATCTATTCAATCTACTAAAGGTTGCATACAAAGAAAGAGATGAAGCCAGAGACCAGCTGCACAAGATCTTCAACAAGATCACTGCTTCTACTCCAATTGACTTGCCCAATGTGCGGTTTACTCAAGTAGTCCAGCCTGAAAGCCCGACTATGATGCCCACAAAAGCAAACTCAAGCATTACTGAATCCAACAGCCTGTCTGGAACTTACAATCCCCATTCACATAACTCTTCTCCAGTTGATTCATTGTTTGATGCAGTCTCTTCCCCTGAGTTTTCAAACATCAACATGGCTGATTCTAGCAACAATTTAGGTTTTGTGAAGCAGCCCTTAGCGCAAGAATTTAATGGAAGTACTATTATACCTTCTGGTGTAGTAGTCTCTTCTGGATTAAGTATCAAAGCTGATCCAGCTGATGAAATAATTGACAATTTTGTTAGGGGTAGGCCTTTGCCTCTGAAAGGGAAGTTACTGCAAGCTGTGATGGATGCTGGTCCATTGCTCCAGACAGTTCTCGTTGCAGGTCCTATGCCCCGGTGGAGGAATCCCCCTCCTTTGCAGCCTTTCAAAATTCCACCAGTTTCAATCAAAGGATGTGAAGCTGCAGTCAGTTTTAACAGCCAGACACCGGTGACAAATCCTACCTATGTGGTTCATAAGACACAGAATTTAACGTCATATCCTGAGATGACTCACGGCTTTTCTCAAACATGTTCAGCTGCCATGTTGAATTTCAACAACGTTGACCCTTCTGCTGTTTCATACCTAAACAATTCAAGAATGTCCACTTCAAATTCCAATTTTGATCACCAAATCCCAATTGCCAAGCGGCATAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

326

Amino Acids

35.79

Weight (kDa)

6.45

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 36 - 283 9.2e-44 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 644
AciI CCGC 2 cut(s) 247, 961
AclI AACGTT 1 cut(s) 873
AclWI GGATC 1 cut(s) 533
AcsI RAATTY 6 cut(s) 100, 473, 702, 799, 862, 925
AfaI GTAC 1 cut(s) 487
AfeI AGCGCT 1 cut(s) 43
AfiI CCNNNNNNNGG 4 cut(s) 246, 593, 672, 760
AflIII ACRYGT 1 cut(s) 842
AgeI ACCGGT 1 cut(s) 760
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 7 cut(s) 64, 190, 536, 545, 611, 734, 851
AluI AGCT 7 cut(s) 64, 190, 536, 545, 611, 734, 851
Alw26I GTCTC 3 cut(s) 177, 397, 517
AlwI GGATC 1 cut(s) 533
Aor51HI AGCGCT 1 cut(s) 43
AoxI GGCC 1 cut(s) 578
ApeKI GCWGC 6 cut(s) 107, 190, 457, 691, 734, 851
ApoI RAATTY 6 cut(s) 100, 473, 702, 799, 862, 925
AsiGI ACCGGT 1 cut(s) 760
Asp700I GAANNNNTTC 1 cut(s) 137
AspLEI GCGC 2 cut(s) 44, 469
AspS9I GGNCC 2 cut(s) 626, 656
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 2 cut(s) 775, 932
AvaII GGWCC 2 cut(s) 626, 656
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BbvI GCAGC 6 cut(s) 119, 177, 469, 703, 721, 838
BccI CCATC 1 cut(s) 610
BceAI ACGGC 1 cut(s) 844
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BclI TGATCA 1 cut(s) 937
BcnI CCSGG 1 cut(s) 667
BcoDI GTCTC 3 cut(s) 177, 397, 517
BfaI CTAG 1 cut(s) 432
BfmI CTRYAG 1 cut(s) 735
BfoI RGCGCY 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 644
BglII AGATCT 1 cut(s) 198
BisI GCNGC 7 cut(s) 108, 191, 458, 692, 735, 852, 962
BlsI GCNGC 7 cut(s) 109, 192, 459, 693, 736, 853, 963
BmcAI AGTACT 1 cut(s) 487
Bme1390I CCNGG 1 cut(s) 667
Bme18I GGWCC 2 cut(s) 626, 656
BmgT120I GGNCC 2 cut(s) 626, 656
BmrFI CCNGG 1 cut(s) 667
BmsI GCATC 3 cut(s) 276, 376, 610
BpmI CTGGAG 2 cut(s) 351, 620
Bpu10I CCTNAGC 1 cut(s) 463
BpuEI CTTGAG 2 cut(s) 240, 289
BpuMI CCSGG 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 665
BsaWI WCCGGW 1 cut(s) 760
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 593, 672, 760
Bse118I RCCGGY 1 cut(s) 760
Bse1I ACTGG 2 cut(s) 368, 710
Bse3DI GCAATG 1 cut(s) 629
BseDI CCNNGG 1 cut(s) 665
BseGI GGATG 2 cut(s) 625, 731
BseLI CCNNNNNNNGG 4 cut(s) 246, 593, 672, 760
BseMI GCAATG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 393, 807
BseNI ACTGG 2 cut(s) 368, 710
BseXI GCAGC 6 cut(s) 119, 177, 469, 703, 721, 838
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 1 cut(s) 580
BshTI ACCGGT 1 cut(s) 760
BsiSI CCGG 2 cut(s) 667, 761
BslI CCNNNNNNNGG 4 cut(s) 246, 593, 672, 760
BsmAI GTCTC 3 cut(s) 177, 397, 517
BsnI GGCC 1 cut(s) 580
Bso31I GGTCTC 1 cut(s) 177
Bsp143I GATC 4 cut(s) 198, 210, 538, 937
BspACI CCGC 2 cut(s) 247, 961
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 2 cut(s) 394, 808
BspHI TCATGA 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 739
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 629
BsrFI RCCGGY 1 cut(s) 760
BsrI ACTGG 2 cut(s) 368, 710
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 1 cut(s) 665
BssMI GATC 4 cut(s) 198, 210, 538, 937
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 3 cut(s) 367, 400, 520
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 3 cut(s) 402, 463, 816
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 625, 731
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 2 cut(s) 44, 469
BstKTI GATC 4 cut(s) 201, 213, 541, 940
BstMAI GTCTC 3 cut(s) 177, 397, 517
BstMBI GATC 4 cut(s) 198, 210, 538, 937
BstMWI GCNNNNNNNGC 4 cut(s) 244, 466, 542, 967
BstNSI RCATGY 1 cut(s) 846
BstSCI CCNGG 1 cut(s) 665
BstSFI CTRYAG 1 cut(s) 735
BstV1I GCAGC 6 cut(s) 119, 177, 469, 703, 721, 838
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 1 cut(s) 580
BtsCI GGATG 2 cut(s) 625, 731
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 1 cut(s) 609
CciI TCATGA 1 cut(s) 34
CfoI GCGC 2 cut(s) 44, 469
Cfr10I RCCGGY 1 cut(s) 760
Cfr13I GGNCC 2 cut(s) 626, 656
Csp6I GTAC 1 cut(s) 486
CspAI ACCGGT 1 cut(s) 760
CviAII CATG 5 cut(s) 10, 35, 421, 843, 856
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 3 cut(s) 402, 463, 816
DpnI GATC 4 cut(s) 200, 212, 540, 939
DpnII GATC 4 cut(s) 198, 210, 538, 937
Eam1104I CTCTTC 3 cut(s) 367, 400, 520
EarI CTCTTC 3 cut(s) 367, 400, 520
Eco147I AGGCCT 1 cut(s) 580
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 626, 656
Eco47III AGCGCT 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 656
FaeI CATG 5 cut(s) 13, 38, 424, 846, 859
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FatI CATG 5 cut(s) 9, 34, 420, 842, 855
FbaI TGATCA 1 cut(s) 937
Fnu4HI GCNGC 7 cut(s) 108, 191, 458, 692, 735, 852, 962
FokI GGATG 2 cut(s) 632, 738
Fsp4HI GCNGC 7 cut(s) 108, 191, 458, 692, 735, 852, 962
FspBI CTAG 1 cut(s) 432
GlaI GCGC 2 cut(s) 43, 468
GluI GCNGC 7 cut(s) 108, 191, 458, 692, 735, 852, 962
GsuI CTGGAG 2 cut(s) 351, 620
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 1 cut(s) 580
HapII CCGG 2 cut(s) 667, 761
HhaI GCGC 2 cut(s) 44, 469
Hin1II CATG 5 cut(s) 13, 38, 424, 846, 859
Hin6I GCGC 2 cut(s) 42, 467
HinP1I GCGC 2 cut(s) 42, 467
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 7 cut(s) 115, 133, 317, 374, 428, 676, 823
HpaII CCGG 2 cut(s) 667, 761
HphI GGTGA 2 cut(s) 775, 932
Hpy166II GTNNAC 4 cut(s) 24, 252, 877, 918
Hpy188I TCNGA 1 cut(s) 591
Hpy188III TCNNGA 7 cut(s) 35, 119, 333, 519, 637, 815, 909
Hpy8I GTNNAC 4 cut(s) 24, 252, 877, 918
HpyAV CCTTC 2 cut(s) 507, 891
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 2 cut(s) 806, 873
HpyCH4V TGCA 7 cut(s) 158, 193, 389, 607, 653, 691, 737
HpyF10VI GCNNNNNNNGC 4 cut(s) 244, 466, 542, 967
HpyF3I CTNAG 3 cut(s) 402, 463, 816
HpySE526I ACGT 2 cut(s) 806, 873
Hsp92II CATG 5 cut(s) 13, 38, 424, 846, 859
HspAI GCGC 2 cut(s) 42, 467
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 4 cut(s) 198, 210, 538, 937
LmnI GCTCC 1 cut(s) 639
Lsp1109I GCAGC 6 cut(s) 119, 177, 469, 703, 721, 838
LweI GCATC 3 cut(s) 276, 376, 610
MaeI CTAG 1 cut(s) 432
MaeII ACGT 2 cut(s) 806, 873
MaeIII GTNAC 2 cut(s) 600, 763
MalI GATC 4 cut(s) 200, 212, 540, 939
MboI GATC 4 cut(s) 198, 210, 538, 937
MboII GAAGA 8 cut(s) 67, 70, 109, 142, 193, 354, 387, 507
MfeI CAATTG 2 cut(s) 228, 951
MflI RGATCY 1 cut(s) 198
MlyI GAGTC 2 cut(s) 124, 817
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 3 cut(s) 597, 666, 693
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 4 cut(s) 477, 524, 747, 803
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 3 cut(s) 190, 545, 851
MspI CCGG 2 cut(s) 667, 761
MspR9I CCNGG 1 cut(s) 667
MunI CAATTG 2 cut(s) 228, 951
MwoI GCNNNNNNNGC 4 cut(s) 244, 466, 542, 967
NciI CCSGG 1 cut(s) 667
NdeII GATC 4 cut(s) 198, 210, 538, 937
NlaIII CATG 5 cut(s) 13, 38, 424, 846, 859
NmuCI GTSAC 1 cut(s) 763
NspI RCATGY 1 cut(s) 846
PagI TCATGA 1 cut(s) 34
PceI AGGCCT 1 cut(s) 580
PciI ACATGT 1 cut(s) 842
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 5 cut(s) 133, 317, 374, 428, 676
PinAI ACCGGT 1 cut(s) 760
PkrI GCNGC 7 cut(s) 109, 192, 459, 693, 736, 853, 963
PleI GAGTC 2 cut(s) 123, 817
PpsI GAGTC 2 cut(s) 123, 817
PpuMI RGGWCCY 1 cut(s) 656
PscI ACATGT 1 cut(s) 842
Psp1406I AACGTT 1 cut(s) 873
Psp5II RGGWCCY 1 cut(s) 656
PspPI GGNCC 2 cut(s) 626, 656
PspPPI RGGWCCY 1 cut(s) 656
PstI CTGCAG 1 cut(s) 739
PsuI RGATCY 1 cut(s) 198
PvuII CAGCTG 3 cut(s) 190, 545, 851
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 4 cut(s) 477, 524, 747, 803
SatI GCNGC 7 cut(s) 108, 191, 458, 692, 735, 852, 962
Sau3AI GATC 4 cut(s) 198, 210, 538, 937
Sau96I GGNCC 2 cut(s) 626, 656
ScaI AGTACT 1 cut(s) 487
SchI GAGTC 2 cut(s) 124, 817
ScrFI CCNGG 1 cut(s) 667
SfaNI GCATC 3 cut(s) 276, 376, 610
SfcI CTRYAG 1 cut(s) 735
SgrAI CRCCGGYG 1 cut(s) 760
SinI GGWCC 2 cut(s) 626, 656
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 255, 304
SmoI CTYRAG 2 cut(s) 255, 304
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 2 cut(s) 247, 961
SspMI CTAG 1 cut(s) 432
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 665
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 2 cut(s) 809, 876
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 964
TfiI GAWTC 5 cut(s) 133, 317, 374, 428, 676
Tru1I TTAA 4 cut(s) 477, 524, 747, 803
Tru9I TTAA 4 cut(s) 477, 524, 747, 803
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 6 cut(s) 107, 190, 457, 691, 734, 851
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 6 cut(s) 110, 189, 366, 564, 776, 882
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 626, 656
XagI CCTNNNNNAGG 1 cut(s) 591
XapI RAATTY 6 cut(s) 100, 473, 702, 799, 862, 925
XceI RCATGY 1 cut(s) 846
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 1 cut(s) 432
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.