Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001232.1

Orthogroup ID

OG0002977

Physical Location & Seq

Genomic Coordinates Forward (+)

47126 .. 48022

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001232.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgcagagcactgacgagttaaagaacgagcttatgtactcaagtcttgaactagaatcagtaaaatgcaaagttaccgagagtcaagaaaatgtgaccaacttgctcaatctgttagaggttgcatacaaagaaagagatgaagccagagaccagttgaagaaaatctttgagaagatgaaccccaattgtactccaattgatcaactgccaaatcatgtagtccagtctgttagcccccaaattttgatgccgacgactacaaaagaaaacttaagcttaactgaatccaacagtccctcttctgttgattccttattcgatcatgcagtttcttcaccagagtttccaagcatcattatgcctgattcaagcaccatgggttttcttaatgtgaagcagcctaatgcggttcaacattttaatttgggcactactaatgttaccatgagtgcccaaactgatacagcttctgaaatagttaacgattttgctaaaggaaagactttacctcagaaagggaaactcatgcaagctgtgaaggaagctggtccattgcttcggacgcttcttattgctggtcccccattgccccagtggcgaaacccccctccccctttgcaacagcctttcaaaatcccacccgttgctccgatcaacggttgtacgacagcttctcctctaagctttaatcagaaaccatttgccatttcaaatcctacaactagctatttcaatgtggctcatacatcttcagctgccaatgccatgttgagtttcaacactgtccttccttctgctggtgtttcatgcttcaataactcaagaatgatggagacttcaaactctggtttcgaccaccaaatcccatttgccaagcggcgaaggcttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1635

Protein Analysis

298

Amino Acids

32.75

Weight (kDa)

6.53

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28690 AT5G59760
fragaria_vesca	FvH4_3g34910 FvH4_3g34910
malus_domestica	MD03G1100400.v1.1 MD11G1114400.v1.1
prunus_persica	Prupe.6G085300_v2.0.a1
pyrus_communis	pycom03g08250 pycom11g09620
rosa_chinensis	RchiOBHm_Chr1g0380111 RchiOBHm_Chr5g0062781 RchiOBHm_Chr6g0300901
rosa_laevigata	RLG00000011292 RLG00000026330 RLG00000035577
rosa_multiflora	Rmu_sc0001232.1_g000013 Rmu_sc0004576.1_g000006 Rmu_sc0006254.1_g000002 Rmu_ssc0000472.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017840 Rroxscaffold_4G00279670 Rroxscaffold_7G00167330
rosa_rugosa	Rorug01G0417500 Rorug05G0351600
rosa_samantha	Rh1AG442700 Rh1BG397800 Rh1CG411300 Rh1DG428600 Rh5AG412600 Rh5BG426500 Rh5CG450600 Rh5DG440400 Rh6AG412900 Rh6BG420100 Rh6CG427600 Rh6DG412900
rosa_wichuraiana	Rw1G038440 Rw5G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	410, 880
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	738
AfaI	GTAC	3 cut(s)	38, 193, 667
AfiI	CCNNNNNNNGG	3 cut(s)	518, 659, 800
AflII	CTTAAG	1 cut(s)	274
AluBI	AGCT	9 cut(s)	31, 279, 470, 536, 548, 674, 687, 729, 758
AluI	AGCT	9 cut(s)	31, 279, 470, 536, 548, 674, 687, 729, 758
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	144, 830
AlwNI	CAGNNNCTG	1 cut(s)	473
ApeKI	GCWGC	2 cut(s)	400, 758
ApoI	RAATTY	1 cut(s)	243
AspS9I	GGNCC	2 cut(s)	551, 581
AsuHPI	GGTGA	1 cut(s)	330
AvaII	GGWCC	2 cut(s)	551, 581
BaeGI	GKGCMC	2 cut(s)	434, 457
BarI	GAAGNNNNNNTAC	2 cut(s)	658, 690
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	412, 745
BccI	CCATC	1 cut(s)	826
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	144, 830
BfaI	CTAG	2 cut(s)	53, 726
BfrI	CTTAAG	1 cut(s)	274
BglI	GCCNNNNNGGC	1 cut(s)	598
BisI	GCNGC	3 cut(s)	401, 759, 881
BlsI	GCNGC	3 cut(s)	402, 760, 882
Bme18I	GGWCC	2 cut(s)	551, 581
BmgT120I	GGNCC	2 cut(s)	551, 581
BmiI	GGNNCC	1 cut(s)	583
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	2 cut(s)	240, 363
BmuI	ACTGGG	1 cut(s)	589
BpuEI	CTTGAG	2 cut(s)	25, 808
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	661, 691
Bsc4I	CCNNNNNNNGG	3 cut(s)	518, 659, 800
Bse1I	ACTGG	3 cut(s)	154, 226, 595
Bse3DI	GCAATG	2 cut(s)	554, 587
BseDI	CCNNGG	1 cut(s)	378
BseLI	CCNNNNNNNGG	3 cut(s)	518, 659, 800
BseMI	GCAATG	2 cut(s)	554, 587
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	3 cut(s)	154, 226, 595
BseRI	GAGGAG	1 cut(s)	669
BseSI	GKGCMC	2 cut(s)	434, 457
BseXI	GCAGC	2 cut(s)	412, 745
BsiHKAI	GWGCWC	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	282, 567
BslI	CCNNNNNNNGG	3 cut(s)	518, 659, 800
BsmAI	GTCTC	2 cut(s)	144, 830
BsmFI	GGGAC	2 cut(s)	282, 567
Bso31I	GGTCTC	1 cut(s)	144
Bsp1286I	GDGCHC	3 cut(s)	11, 434, 457
Bsp143I	GATC	3 cut(s)	202, 322, 654
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	2 cut(s)	410, 880
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	583
BspTI	CTTAAG	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	144
BsrDI	GCAATG	2 cut(s)	554, 587
BsrI	ACTGG	3 cut(s)	154, 226, 595
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	3 cut(s)	202, 322, 654
BssT1I	CCWWGG	1 cut(s)	378
Bst4CI	ACNGT	3 cut(s)	296, 662, 787
Bst6I	CTCTTC	1 cut(s)	307
BstAFI	CTTAAG	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	2 cut(s)	513, 683
BstDSI	CCRYGG	1 cut(s)	378
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstKTI	GATC	3 cut(s)	205, 325, 657
BstMAI	GTCTC	2 cut(s)	144, 830
BstMBI	GATC	3 cut(s)	202, 322, 654
BstMWI	GCNNNNNNNGC	4 cut(s)	565, 598, 764, 886
BstSLI	GKGCMC	2 cut(s)	434, 457
BstV1I	GCAGC	2 cut(s)	412, 745
BtgI	CCRYGG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	9, 602, 783
Cac8I	GCNNGC	1 cut(s)	534
CaiI	CAGNNNCTG	1 cut(s)	473
Cfr13I	GGNCC	2 cut(s)	551, 581
CseI	GACGC	1 cut(s)	574
Csp6I	GTAC	3 cut(s)	37, 192, 666
CviAII	CATG	7 cut(s)	218, 326, 379, 448, 529, 769, 810
CviQI	GTAC	3 cut(s)	37, 192, 666
DdeI	CTNAG	2 cut(s)	513, 683
DpnI	GATC	3 cut(s)	204, 324, 656
DpnII	GATC	3 cut(s)	202, 322, 654
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	551, 581
Eco57I	CTGAAG	1 cut(s)	738
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	7 cut(s)	221, 329, 382, 451, 532, 772, 813
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	2 cut(s)	282, 567
FatI	CATG	7 cut(s)	217, 325, 378, 447, 528, 768, 809
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	401, 759, 881
Fsp4HI	GCNGC	3 cut(s)	401, 759, 881
FspBI	CTAG	2 cut(s)	53, 726
GluI	GCNGC	3 cut(s)	401, 759, 881
HgaI	GACGC	1 cut(s)	574
Hin1II	CATG	7 cut(s)	221, 329, 382, 451, 532, 772, 813
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	2 cut(s)	277, 685
HinfI	GANTC	5 cut(s)	56, 82, 287, 311, 368
HpaI	GTTAAC	1 cut(s)	484
HphI	GGTGA	1 cut(s)	330
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	5 cut(s)	475, 516, 564, 654, 696
Hpy188III	TCNNGA	3 cut(s)	47, 86, 825
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	4 cut(s)	535, 800, 804, 879
HpyCH4III	ACNGT	3 cut(s)	296, 662, 787
HpyCH4V	TGCA	6 cut(s)	4, 69, 125, 329, 532, 622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	565, 598, 764, 886
HpyF3I	CTNAG	2 cut(s)	513, 683
Hsp92II	CATG	7 cut(s)	221, 329, 382, 451, 532, 772, 813
Ksp22I	TGATCA	1 cut(s)	202
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	202, 322, 654
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	2 cut(s)	412, 745
LweI	GCATC	2 cut(s)	240, 363
MaeI	CTAG	2 cut(s)	53, 726
MaeIII	GTNAC	3 cut(s)	73, 94, 442
MalI	GATC	3 cut(s)	204, 324, 656
MboI	GATC	3 cut(s)	202, 322, 654
MboII	GAAGA	5 cut(s)	172, 187, 294, 327, 744
MfeI	CAATTG	2 cut(s)	187, 198
MhlI	GDGCHC	3 cut(s)	11, 434, 457
MluCI	AATT	4 cut(s)	187, 198, 243, 424
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	112, 310, 522, 621, 690
MseI	TTAA	7 cut(s)	20, 275, 281, 390, 423, 483, 690
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	758
MspCI	CTTAAG	1 cut(s)	274
MunI	CAATTG	2 cut(s)	187, 198
MwoI	GCNNNNNNNGC	4 cut(s)	565, 598, 764, 886
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	3 cut(s)	202, 322, 654
NlaIII	CATG	7 cut(s)	221, 329, 382, 451, 532, 772, 813
NlaIV	GGNNCC	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	94
PfeI	GAWTC	4 cut(s)	56, 287, 311, 368
PkrI	GCNGC	3 cut(s)	402, 760, 882
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	2 cut(s)	551, 581
PstNI	CAGNNNCTG	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	3 cut(s)	38, 193, 667
RsaNI	GTAC	3 cut(s)	37, 192, 666
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	7 cut(s)	20, 275, 281, 390, 423, 483, 690
SatI	GCNGC	3 cut(s)	401, 759, 881
Sau3AI	GATC	3 cut(s)	202, 322, 654
Sau96I	GGNCC	2 cut(s)	551, 581
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	3 cut(s)	11, 434, 457
SfaNI	GCATC	2 cut(s)	240, 363
SinI	GGWCC	2 cut(s)	551, 581
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	3 cut(s)	40, 274, 823
SmoI	CTYRAG	3 cut(s)	40, 274, 823
Sse9I	AATT	4 cut(s)	187, 198, 243, 424
SsiI	CCGC	2 cut(s)	410, 880
SspMI	CTAG	2 cut(s)	53, 726
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	3 cut(s)	296, 662, 787
TaqI	TCGA	2 cut(s)	321, 855
TasI	AATT	4 cut(s)	187, 198, 243, 424
TatI	WGTACW	2 cut(s)	36, 191
TauI	GCSGC	1 cut(s)	883
TfiI	GAWTC	4 cut(s)	56, 287, 311, 368
Tru1I	TTAA	7 cut(s)	20, 275, 281, 390, 423, 483, 690
Tru9I	TTAA	7 cut(s)	20, 275, 281, 390, 423, 483, 690
TscAI	CASTG	3 cut(s)	16, 602, 790
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	2 cut(s)	400, 758
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	156, 194, 798
TspRI	CASTG	3 cut(s)	16, 602, 790
Vha464I	CTTAAG	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	551, 581
XagI	CCTNNNNNAGG	1 cut(s)	516
XapI	RAATTY	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	594
XspI	CTAG	2 cut(s)	53, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.