RchiOBHm_Chr1g0380111

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002977
Physical Location & Seq
Forward (+)
65882247 .. 65883209
963 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60341

Sequence Viewer

Length: 963 bp
ATGATCAAGTACTCGATGGAAAGTACCCTTTTATTATATTTAACCAATTACTTGTTTGGAATTGACATGCAGAGCACTGACGAGTTAAAGAACGAGCTTATGTACTCAAGTCTTGAACTAGAATCAGTAAAATGCAAAGTTACCGAGAGTCAAGAAAATGTGACCAACTTGCTCAATCTGTTAGAGGTTGCATACAAAGAAAGAGATGAAGCCAGAGACCAGTTGAAGAAAATCTTTGAGAAGATGAACCCCAATTGTACTCCAATTGATCAACTGCCAAATCATGTAGTCCAGTCTGTTAGCCCCCAAATTTTGATGCCGACGACTACAAAAGAAAACTTAAGCTTAACTGAATCCAACAGTCCCTCTTCTGTTGATTCCTTATTCGATCATGCAGTTTCTTCACCAGAGTTTCCAAGCATCATTATGCCTGATTCAAGCACCATGGGTTTTCTTAATGTGAAGCAGCCTAATGCGGTTCAACATTTTAATTTGGGCACTACTAATGTTACCATGAGTGCCCAAACTGATACAGCTTCTGAAATAGTTAACGATTTTGCTAAAGGAAAGACTTTACCTCAGAAAGGGAAACTCATGCAAGCTGTGAAGGAAGCTGGTCCATTGCTTCGGACGCTTCTTATTGCTGGTCCCCCATTGCCCCAGTGGCGAAACCCCCCTCCCCCTTTGCAACAGCCTTTCAAAATCCCACCCGTTGCTCCGATCAACGGTTGTACGACAGCTTCTCCTCTAAGCTTTAATCAGAAACCATTTGCCATTTCAAATCCTACAACTAGCTATTTCAATGTGGCTCATACATCTTCAGCTGCCAATGCCATGTTGAGTTTCAACACTGTCCTTCCTTCTGCTGGTGTTTCATGCTTCAATAACTCAAGAATGATGGAGACTTCAAACTCTGGTTTCGACCACCAAATCCCATTTGCCAAGCGGCGAAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

320

Amino Acids

35.36

Weight (kDa)

6.23

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 24 - 245 3.3e-39 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 476, 946
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 804
AfaI GTAC 5 cut(s) 11, 25, 104, 259, 733
AfiI CCNNNNNNNGG 3 cut(s) 584, 725, 866
AflII CTTAAG 1 cut(s) 340
AluBI AGCT 9 cut(s) 97, 345, 536, 602, 614, 740, 753, 795, 824
AluI AGCT 9 cut(s) 97, 345, 536, 602, 614, 740, 753, 795, 824
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 2 cut(s) 210, 896
AlwNI CAGNNNCTG 1 cut(s) 539
ApeKI GCWGC 2 cut(s) 466, 824
ApoI RAATTY 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 617, 647
AsuHPI GGTGA 1 cut(s) 396
AvaII GGWCC 2 cut(s) 617, 647
BaeGI GKGCMC 2 cut(s) 500, 523
BarI GAAGNNNNNNTAC 2 cut(s) 724, 756
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 478, 811
BccI CCATC 2 cut(s) 10, 892
BclI TGATCA 2 cut(s) 3, 268
BcoDI GTCTC 2 cut(s) 210, 896
BfaI CTAG 2 cut(s) 119, 792
BfrI CTTAAG 1 cut(s) 340
BglI GCCNNNNNGGC 1 cut(s) 664
BisI GCNGC 3 cut(s) 467, 825, 947
BlsI GCNGC 3 cut(s) 468, 826, 948
BmcAI AGTACT 1 cut(s) 11
Bme18I GGWCC 2 cut(s) 617, 647
BmgT120I GGNCC 2 cut(s) 617, 647
BmiI GGNNCC 1 cut(s) 649
BmrI ACTGGG 1 cut(s) 655
BmsI GCATC 2 cut(s) 306, 429
BmuI ACTGGG 1 cut(s) 655
BpuEI CTTGAG 2 cut(s) 91, 874
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 444
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bsc4I CCNNNNNNNGG 3 cut(s) 584, 725, 866
Bse1I ACTGG 3 cut(s) 220, 292, 661
Bse3DI GCAATG 2 cut(s) 620, 653
BseDI CCNNGG 1 cut(s) 444
BseLI CCNNNNNNNGG 3 cut(s) 584, 725, 866
BseMI GCAATG 2 cut(s) 620, 653
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 3 cut(s) 220, 292, 661
BseRI GAGGAG 1 cut(s) 735
BseSI GKGCMC 2 cut(s) 500, 523
BseXI GCAGC 2 cut(s) 478, 811
BsiHKAI GWGCWC 1 cut(s) 77
BslFI GGGAC 2 cut(s) 348, 633
BslI CCNNNNNNNGG 3 cut(s) 584, 725, 866
BsmAI GTCTC 2 cut(s) 210, 896
BsmFI GGGAC 2 cut(s) 348, 633
Bso31I GGTCTC 1 cut(s) 210
Bsp1286I GDGCHC 3 cut(s) 77, 500, 523
Bsp143I GATC 4 cut(s) 3, 268, 388, 720
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 2 cut(s) 476, 946
BspCNI CTCAG 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 649
BspTI CTTAAG 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 2 cut(s) 620, 653
BsrI ACTGG 3 cut(s) 220, 292, 661
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 4 cut(s) 3, 268, 388, 720
BssT1I CCWWGG 1 cut(s) 444
Bst4CI ACNGT 3 cut(s) 362, 728, 853
Bst6I CTCTTC 1 cut(s) 373
BstAFI CTTAAG 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 2 cut(s) 579, 749
BstDSI CCRYGG 1 cut(s) 444
BstENI CCTNNNNNAGG 1 cut(s) 582
BstKTI GATC 4 cut(s) 6, 271, 391, 723
BstMAI GTCTC 2 cut(s) 210, 896
BstMBI GATC 4 cut(s) 3, 268, 388, 720
BstMWI GCNNNNNNNGC 4 cut(s) 631, 664, 830, 952
BstNSI RCATGY 1 cut(s) 70
BstSLI GKGCMC 2 cut(s) 500, 523
BstV1I GCAGC 2 cut(s) 478, 811
BtgI CCRYGG 1 cut(s) 444
BtsIMutI CAGTG 3 cut(s) 75, 668, 849
Cac8I GCNNGC 1 cut(s) 600
CaiI CAGNNNCTG 1 cut(s) 539
Cfr13I GGNCC 2 cut(s) 617, 647
CseI GACGC 1 cut(s) 640
Csp6I GTAC 5 cut(s) 10, 24, 103, 258, 732
CviAII CATG 8 cut(s) 67, 284, 392, 445, 514, 595, 835, 876
CviQI GTAC 5 cut(s) 10, 24, 103, 258, 732
DdeI CTNAG 2 cut(s) 579, 749
DpnI GATC 4 cut(s) 5, 270, 390, 722
DpnII GATC 4 cut(s) 3, 268, 388, 720
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 444
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 617, 647
Eco57I CTGAAG 1 cut(s) 804
EcoNI CCTNNNNNAGG 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 8 cut(s) 70, 287, 395, 448, 517, 598, 838, 879
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 2 cut(s) 348, 633
FatI CATG 8 cut(s) 66, 283, 391, 444, 513, 594, 834, 875
FbaI TGATCA 2 cut(s) 3, 268
Fnu4HI GCNGC 3 cut(s) 467, 825, 947
Fsp4HI GCNGC 3 cut(s) 467, 825, 947
FspBI CTAG 2 cut(s) 119, 792
GluI GCNGC 3 cut(s) 467, 825, 947
HgaI GACGC 1 cut(s) 640
Hin1II CATG 8 cut(s) 70, 287, 395, 448, 517, 598, 838, 879
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 2 cut(s) 343, 751
HinfI GANTC 5 cut(s) 122, 148, 353, 377, 434
HpaI GTTAAC 1 cut(s) 550
HphI GGTGA 1 cut(s) 396
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 5 cut(s) 541, 582, 630, 720, 762
Hpy188III TCNNGA 3 cut(s) 113, 152, 891
Hpy8I GTNNAC 1 cut(s) 550
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 4 cut(s) 601, 866, 870, 945
HpyCH4III ACNGT 3 cut(s) 362, 728, 853
HpyCH4V TGCA 6 cut(s) 70, 135, 191, 395, 598, 688
HpyF10VI GCNNNNNNNGC 4 cut(s) 631, 664, 830, 952
HpyF3I CTNAG 2 cut(s) 579, 749
Hsp92II CATG 8 cut(s) 70, 287, 395, 448, 517, 598, 838, 879
Ksp22I TGATCA 2 cut(s) 3, 268
KspAI GTTAAC 1 cut(s) 550
Kzo9I GATC 4 cut(s) 3, 268, 388, 720
LmnI GCTCC 1 cut(s) 721
Lsp1109I GCAGC 2 cut(s) 478, 811
LweI GCATC 2 cut(s) 306, 429
MaeI CTAG 2 cut(s) 119, 792
MaeIII GTNAC 3 cut(s) 139, 160, 508
MalI GATC 4 cut(s) 5, 270, 390, 722
MboI GATC 4 cut(s) 3, 268, 388, 720
MboII GAAGA 5 cut(s) 238, 253, 360, 393, 810
MfeI CAATTG 2 cut(s) 253, 264
MhlI GDGCHC 3 cut(s) 77, 500, 523
MluCI AATT 6 cut(s) 46, 60, 253, 264, 309, 490
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 5 cut(s) 178, 376, 588, 687, 756
MseI TTAA 8 cut(s) 41, 86, 341, 347, 456, 489, 549, 756
MslI CAYNNNNRTG 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 824
MspCI CTTAAG 1 cut(s) 340
MunI CAATTG 2 cut(s) 253, 264
MwoI GCNNNNNNNGC 4 cut(s) 631, 664, 830, 952
NcoI CCATGG 1 cut(s) 444
NdeII GATC 4 cut(s) 3, 268, 388, 720
NlaIII CATG 8 cut(s) 70, 287, 395, 448, 517, 598, 838, 879
NlaIV GGNNCC 1 cut(s) 649
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 70
PfeI GAWTC 4 cut(s) 122, 353, 377, 434
PkrI GCNGC 3 cut(s) 468, 826, 948
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 649
PspPI GGNCC 2 cut(s) 617, 647
PstNI CAGNNNCTG 1 cut(s) 539
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 5 cut(s) 11, 25, 104, 259, 733
RsaNI GTAC 5 cut(s) 10, 24, 103, 258, 732
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 8 cut(s) 41, 86, 341, 347, 456, 489, 549, 756
SatI GCNGC 3 cut(s) 467, 825, 947
Sau3AI GATC 4 cut(s) 3, 268, 388, 720
Sau96I GGNCC 2 cut(s) 617, 647
ScaI AGTACT 1 cut(s) 11
SchI GAGTC 1 cut(s) 157
SduI GDGCHC 3 cut(s) 77, 500, 523
SfaNI GCATC 2 cut(s) 306, 429
SinI GGWCC 2 cut(s) 617, 647
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 3 cut(s) 106, 340, 889
SmoI CTYRAG 3 cut(s) 106, 340, 889
Sse9I AATT 6 cut(s) 46, 60, 253, 264, 309, 490
SsiI CCGC 2 cut(s) 476, 946
SspMI CTAG 2 cut(s) 119, 792
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 3 cut(s) 362, 728, 853
TaqI TCGA 3 cut(s) 14, 387, 921
TasI AATT 6 cut(s) 46, 60, 253, 264, 309, 490
TatI WGTACW 3 cut(s) 9, 102, 257
TauI GCSGC 1 cut(s) 949
TfiI GAWTC 4 cut(s) 122, 353, 377, 434
Tru1I TTAA 8 cut(s) 41, 86, 341, 347, 456, 489, 549, 756
Tru9I TTAA 8 cut(s) 41, 86, 341, 347, 456, 489, 549, 756
TscAI CASTG 3 cut(s) 82, 668, 856
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 2 cut(s) 466, 824
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 222, 260, 864
TspRI CASTG 3 cut(s) 82, 668, 856
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 617, 647
XagI CCTNNNNNAGG 1 cut(s) 582
XapI RAATTY 1 cut(s) 309
XceI RCATGY 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 660
XspI CTAG 2 cut(s) 119, 792
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.