RLG00000035577

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002977
Physical Location & Seq
Reverse (-)
68906767 .. 68908732
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035577

Sequence Viewer

Length: 975 bp
ATGGAGGACATGGGTTCTATATGGACTACCTATCAAGAGAGCACTGATGATTTGAACAAGAAGCTTCTTTACACTACCCTTGAGCTTGAAACAATGAAGAATTTAGCAACAGAGAGTCAAGAGAATGTGAAGAATCTACTCAATCTACTAAAGGTTGCATACAAAGAAAGAGATGAAGCCAGAGACCAGCTGCACAAGTTCTTCAACAAGATCACTGCTTCTACTCCAATTGACTTACCCAATATGCTGTTTAATCAAGTAATCCAGCCCGAAAGTCCGACTTTGATGCCCACAAAAGCAAACTCGAGCATTACTGAATCCAACAGCCTCTCTGAAACTTACAATCCCCAATCACATATCTCTTCTCCTGTTGATTCATTGTTTGATGCAGTCTCTTCTCCTGAGTTTTCCAATATCAACATGGCTGATTCTAGCAACATGGGTTTTGTGAAGCAGCCTTTGGTGAAAGAATTTAATGCAAGTACTATTATACCAACTGGTGTAGTGGTCTCTTCTGGTTCAAGTATCAAAGCTGATCCAGCTAATGAAATAATTGACAATTTTGTTAGGGGTAGGCCTTTGCCTCAGAAAGGGAAGTTATTGCAAGCTGTGATGGATGCTGGTCCATTGCTTCAGACACTTCTTGTTGCAGGTCCTATGCCCCGGTGGCGAAATCCCCCTCCTTTGCAGCCCTTCAAAATCCCACCAGTTTCAATCAAAGGTTGTGAAGCTGCTGTGAGTTTTAACAACCAGAAACCCGTGGCAAGTCCTACCTATGTGGTTCATAAGACACACAACTTAACATCTTATCCTGAGATGACTCGCGGCTTTTCTCAAACATGTTCAGCTGCCATGTTGAATTTCAGCAATGTCAATCCTAATGCTGTTTCACACCTAAACAATTCAAGAATGCCGAGTTCAATTTCCAGTTTTGATCACCAAATCCCAATTGCCAAGCGGCATAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

325

Amino Acids

35.83

Weight (kDa)

7.06

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 13 - 252 1.2e-44 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 641
AccII CGCG 1 cut(s) 825
AciI CCGC 2 cut(s) 825, 958
AclWI GGATC 1 cut(s) 530
AcsI RAATTY 3 cut(s) 100, 470, 859
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 1 cut(s) 590
AflIII ACRYGT 1 cut(s) 839
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 8 cut(s) 64, 85, 190, 533, 542, 608, 731, 848
AluI AGCT 8 cut(s) 64, 85, 190, 533, 542, 608, 731, 848
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 3 cut(s) 177, 397, 514
AlwI GGATC 1 cut(s) 530
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 1 cut(s) 575
ApeKI GCWGC 5 cut(s) 190, 454, 688, 731, 848
ApoI RAATTY 3 cut(s) 100, 470, 859
AspS9I GGNCC 2 cut(s) 623, 653
AsuC2I CCSGG 1 cut(s) 664
AsuHPI GGTGA 2 cut(s) 475, 929
AvaI CYCGRG 1 cut(s) 304
AvaII GGWCC 2 cut(s) 623, 653
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 5 cut(s) 177, 466, 700, 718, 835
BccI CCATC 1 cut(s) 607
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BclI TGATCA 1 cut(s) 934
BcnI CCSGG 1 cut(s) 664
BcoDI GTCTC 3 cut(s) 177, 397, 514
BfaI CTAG 1 cut(s) 432
BfuAI ACCTGC 1 cut(s) 641
BglI GCCNNNNNGGC 1 cut(s) 667
BisI GCNGC 7 cut(s) 191, 455, 689, 732, 826, 849, 959
BlsI GCNGC 7 cut(s) 192, 456, 690, 733, 827, 850, 960
BmcAI AGTACT 1 cut(s) 484
Bme1390I CCNGG 1 cut(s) 664
Bme18I GGWCC 2 cut(s) 623, 653
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 623, 653
BmrFI CCNGG 1 cut(s) 664
BmsI GCATC 3 cut(s) 276, 376, 607
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 664
BsaI GGTCTC 2 cut(s) 177, 514
BsaJI CCNNGG 2 cut(s) 662, 759
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse1I ACTGG 3 cut(s) 502, 707, 927
Bse3DI GCAATG 2 cut(s) 626, 874
BseDI CCNNGG 2 cut(s) 662, 759
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMI GCAATG 2 cut(s) 626, 874
BseMII CTCAG 3 cut(s) 393, 599, 804
BseNI ACTGG 3 cut(s) 502, 707, 927
BseXI GCAGC 5 cut(s) 177, 466, 700, 718, 835
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 825
BshFI GGCC 1 cut(s) 577
BsiHKAI GWGCWC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 1 cut(s) 664
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 3 cut(s) 177, 397, 514
BsmI GAATGC 1 cut(s) 915
BsnI GGCC 1 cut(s) 577
Bso31I GGTCTC 2 cut(s) 177, 514
BsoBI CYCGRG 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 210, 535, 934
BspACI CCGC 2 cut(s) 825, 958
BspANI GGCC 1 cut(s) 577
BspCNI CTCAG 3 cut(s) 394, 598, 805
BspFNI CGCG 1 cut(s) 825
BspMI ACCTGC 1 cut(s) 641
BspPI GGATC 1 cut(s) 530
BspTNI GGTCTC 2 cut(s) 177, 514
BsrDI GCAATG 2 cut(s) 626, 874
BsrI ACTGG 3 cut(s) 502, 707, 927
BssECI CCNNGG 2 cut(s) 662, 759
BssMI GATC 3 cut(s) 210, 535, 934
Bst6I CTCTTC 3 cut(s) 367, 400, 517
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 3 cut(s) 402, 585, 813
BstDSI CCRYGG 1 cut(s) 759
BstENI CCTNNNNNAGG 1 cut(s) 588
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 825
BstKTI GATC 3 cut(s) 213, 538, 937
BstMAI GTCTC 3 cut(s) 177, 397, 514
BstMBI GATC 3 cut(s) 210, 535, 934
BstMWI GCNNNNNNNGC 3 cut(s) 539, 667, 964
BstNSI RCATGY 1 cut(s) 843
BstSCI CCNGG 1 cut(s) 662
BstUI CGCG 1 cut(s) 825
BstV1I GCAGC 5 cut(s) 177, 466, 700, 718, 835
BsuRI GGCC 1 cut(s) 577
BtgI CCRYGG 1 cut(s) 759
BtsCI GGATG 1 cut(s) 622
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 42, 213
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 1 cut(s) 606
Cfr13I GGNCC 2 cut(s) 623, 653
Csp6I GTAC 1 cut(s) 483
CviAII CATG 5 cut(s) 10, 421, 439, 840, 853
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 3 cut(s) 402, 585, 813
DpnI GATC 3 cut(s) 212, 537, 936
DpnII GATC 3 cut(s) 210, 535, 934
Eam1104I CTCTTC 3 cut(s) 367, 400, 517
EarI CTCTTC 3 cut(s) 367, 400, 517
Eco147I AGGCCT 1 cut(s) 577
Eco31I GGTCTC 2 cut(s) 177, 514
Eco47I GGWCC 2 cut(s) 623, 653
Eco57I CTGAAG 1 cut(s) 617
Eco88I CYCGRG 1 cut(s) 304
EcoNI CCTNNNNNAGG 1 cut(s) 588
EcoO109I RGGNCCY 1 cut(s) 653
FaeI CATG 5 cut(s) 13, 424, 442, 843, 856
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FatI CATG 5 cut(s) 9, 420, 438, 839, 852
FbaI TGATCA 1 cut(s) 934
Fnu4HI GCNGC 7 cut(s) 191, 455, 689, 732, 826, 849, 959
FokI GGATG 1 cut(s) 629
Fsp4HI GCNGC 7 cut(s) 191, 455, 689, 732, 826, 849, 959
FspBI CTAG 1 cut(s) 432
GluI GCNGC 7 cut(s) 191, 455, 689, 732, 826, 849, 959
HaeIII GGCC 1 cut(s) 577
HapII CCGG 1 cut(s) 664
Hin1II CATG 5 cut(s) 13, 424, 442, 843, 856
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 6 cut(s) 115, 133, 317, 374, 428, 820
HpaII CCGG 1 cut(s) 664
HphI GGTGA 2 cut(s) 475, 929
Hpy188I TCNGA 4 cut(s) 279, 334, 588, 636
Hpy188III TCNNGA 5 cut(s) 35, 119, 401, 812, 906
HpyAV CCTTC 1 cut(s) 703
HpyCH4V TGCA 7 cut(s) 158, 193, 389, 479, 604, 650, 688
HpyF10VI GCNNNNNNNGC 3 cut(s) 539, 667, 964
HpyF3I CTNAG 3 cut(s) 402, 585, 813
Hsp92II CATG 5 cut(s) 13, 424, 442, 843, 856
Ksp22I TGATCA 1 cut(s) 934
Kzo9I GATC 3 cut(s) 210, 535, 934
Lsp1109I GCAGC 5 cut(s) 177, 466, 700, 718, 835
LweI GCATC 3 cut(s) 276, 376, 607
MaeI CTAG 1 cut(s) 432
MalI GATC 3 cut(s) 212, 537, 936
MboI GATC 3 cut(s) 210, 535, 934
MboII GAAGA 6 cut(s) 109, 142, 193, 354, 387, 504
MfeI CAATTG 2 cut(s) 228, 948
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 9 cut(s) 100, 228, 470, 552, 559, 859, 901, 921, 948
MlyI GAGTC 2 cut(s) 124, 814
MmeI TCCRAC 2 cut(s) 302, 345
MnlI CCTC 3 cut(s) 338, 594, 690
MseI TTAA 4 cut(s) 252, 474, 744, 800
MspA1I CMGCKG 2 cut(s) 190, 848
MspI CCGG 1 cut(s) 664
MspR9I CCNGG 1 cut(s) 664
MunI CAATTG 2 cut(s) 228, 948
Mva1269I GAATGC 1 cut(s) 915
MvnI CGCG 1 cut(s) 825
MwoI GCNNNNNNNGC 3 cut(s) 539, 667, 964
NciI CCSGG 1 cut(s) 664
NdeII GATC 3 cut(s) 210, 535, 934
NlaIII CATG 5 cut(s) 13, 424, 442, 843, 856
NmeAIII GCCGAG 1 cut(s) 939
NspI RCATGY 1 cut(s) 843
PaeR7I CTCGAG 1 cut(s) 304
PceI AGGCCT 1 cut(s) 577
PciI ACATGT 1 cut(s) 839
PctI GAATGC 1 cut(s) 915
PfeI GAWTC 4 cut(s) 133, 317, 374, 428
PkrI GCNGC 7 cut(s) 192, 456, 690, 733, 827, 850, 960
PleI GAGTC 2 cut(s) 123, 814
PpsI GAGTC 2 cut(s) 123, 814
PpuMI RGGWCCY 1 cut(s) 653
PscI ACATGT 1 cut(s) 839
Psp5II RGGWCCY 1 cut(s) 653
PspPI GGNCC 2 cut(s) 623, 653
PspPPI RGGWCCY 1 cut(s) 653
PspXI VCTCGAGB 1 cut(s) 304
PvuII CAGCTG 2 cut(s) 190, 848
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
SaqAI TTAA 4 cut(s) 252, 474, 744, 800
SatI GCNGC 7 cut(s) 191, 455, 689, 732, 826, 849, 959
Sau3AI GATC 3 cut(s) 210, 535, 934
Sau96I GGNCC 2 cut(s) 623, 653
ScaI AGTACT 1 cut(s) 484
SchI GAGTC 2 cut(s) 124, 814
ScrFI CCNGG 1 cut(s) 664
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 3 cut(s) 276, 376, 607
Sfr274I CTCGAG 1 cut(s) 304
SinI GGWCC 2 cut(s) 623, 653
SlaI CTCGAG 1 cut(s) 304
SmlI CTYRAG 2 cut(s) 80, 304
SmoI CTYRAG 2 cut(s) 80, 304
Sse9I AATT 9 cut(s) 100, 228, 470, 552, 559, 859, 901, 921, 948
SseBI AGGCCT 1 cut(s) 577
SsiI CCGC 2 cut(s) 825, 958
SspMI CTAG 1 cut(s) 432
StuI AGGCCT 1 cut(s) 577
StyD4I CCNGG 1 cut(s) 662
TaqI TCGA 1 cut(s) 305
TasI AATT 9 cut(s) 100, 228, 470, 552, 559, 859, 901, 921, 948
TatI WGTACW 1 cut(s) 482
TauI GCSGC 2 cut(s) 828, 961
TfiI GAWTC 4 cut(s) 133, 317, 374, 428
Tru1I TTAA 4 cut(s) 252, 474, 744, 800
Tru9I TTAA 4 cut(s) 252, 474, 744, 800
TscAI CASTG 2 cut(s) 49, 220
TseI GCWGC 5 cut(s) 190, 454, 688, 731, 848
TspDTI ATGAA 5 cut(s) 110, 189, 366, 561, 773
TspRI CASTG 2 cut(s) 49, 220
VpaK11BI GGWCC 2 cut(s) 623, 653
XagI CCTNNNNNAGG 1 cut(s) 588
XapI RAATTY 3 cut(s) 100, 470, 859
XceI RCATGY 1 cut(s) 843
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XhoI CTCGAG 1 cut(s) 304
XspI CTAG 1 cut(s) 432
ZrmI AGTACT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.