Rroxscaffold_7G00167330

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002977
Physical Location & Seq
Reverse (-)
8489880 .. 8491607
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00167330.1

Sequence Viewer

Length: 900 bp
ATGGAGGATTTGAGTTCTATGTGGATGACTTGTGAAGAGAGTACAAATGACTTGAAGCAGAAGATTTTGAGCACCACCCTTGAACTAGAATCAGTGAAGAGTTTAGCAGCTGAGAGTCAACAAAATGCGAACAAGATACTCAGCCTTTTACAGGTTGCATATAAAGAAAGAGATGAAGCCAGAAATGAGTTGCGGCAAATCTTAAACAAGATGAACCCTAATTCTGCTCCAATCGAACAGTTTCCTAATGTTGTCCCACCCATTTTCATACCCCCAAAAGCAAACTCAGACATATCTGAGTCAAACGGTATCATTAATCCCCAATATGACTCTTCTCTTGTTGATTCCTTATTTGATGCACTTTCTTCACCAGATTTCTCTAATATCAATGATTCTAGCCACACGAGTTTTTTTAACCAGCCTTTAACAGAAGAACTTATCCGGACTACTAAGAATATTCCCACTGGTGTAGTGGCCTCTTTTGGTTTGGATGCTAAAATTGATTATATTGCTAAAGGCAAGAGTCTGCCTCAAAAAGGGAAGTTGTTGCAGGCTCTGATGGAAGCGGGTCCATTGCTTAAGACGCTTCTTGTCACCGGGCCTCCTCTGCCCCGGTGGAGGAATCCGCCTACTATGCAGACCCTAGAAATCCCACCCATATCACTCGAAGGTTGCGAGACAATTCTTGCAAGGTTTAATGAGAAACCAGTGACTAAGGCATGTTCTTCTAATCATCTGAATTCAATATCCTGTCCTGGATTTTCTCAAACATGTTCAGCTGCCATGTGGAATTTCAACAATATTCCTCCTGTGATATCATGCAAACGTTCGAGGCCGCTGAATTCGAGTTCATATTTTGATCAACAAATCCCTGCTGCCAAGCAATGTAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

299

Amino Acids

33.05

Weight (kDa)

5.84

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 14 - 243 3.9e-35 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 441
AciI CCGC 4 cut(s) 193, 566, 626, 836
AclI AACGTT 1 cut(s) 826
AcsI RAATTY 3 cut(s) 739, 790, 841
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 3 cut(s) 151, 536, 618
AflII CTTAAG 1 cut(s) 578
AflIII ACRYGT 1 cut(s) 770
AgsI TTSAA 5 cut(s) 55, 83, 744, 796, 896
AjnI CCWGG 1 cut(s) 754
AluBI AGCT 2 cut(s) 110, 779
AluI AGCT 2 cut(s) 110, 779
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 671
AlwNI CAGNNNCTG 1 cut(s) 556
Aor13HI TCCGGA 1 cut(s) 441
AoxI GGCC 3 cut(s) 474, 599, 833
ApeKI GCWGC 3 cut(s) 107, 779, 875
ApoI RAATTY 3 cut(s) 739, 790, 841
AseI ATTAAT 1 cut(s) 315
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 569, 599
AsuC2I CCSGG 2 cut(s) 598, 613
AsuHPI GGTGA 2 cut(s) 360, 586
AvaII GGWCC 1 cut(s) 569
BauI CACGAG 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 3 cut(s) 119, 766, 862
BccI CCATC 1 cut(s) 553
BciT130I CCWGG 1 cut(s) 756
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 2 cut(s) 598, 613
BcoDI GTCTC 1 cut(s) 671
BfaI CTAG 3 cut(s) 86, 396, 644
BfrI CTTAAG 1 cut(s) 578
BisI GCNGC 5 cut(s) 108, 194, 780, 836, 876
BlsI GCNGC 5 cut(s) 109, 195, 781, 837, 877
Bme1390I CCNGG 3 cut(s) 598, 613, 756
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 2 cut(s) 569, 599
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 3 cut(s) 598, 613, 756
BmsI GCATC 2 cut(s) 346, 481
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpuMI CCSGG 2 cut(s) 598, 613
BsaJI CCNNGG 1 cut(s) 611
BsaWI WCCGGW 1 cut(s) 441
BsaXI ACNNNNNCTCC 2 cut(s) 586, 616
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 536, 618
Bse1I ACTGG 2 cut(s) 469, 707
Bse3DI GCAATG 2 cut(s) 572, 890
BseAI TCCGGA 1 cut(s) 441
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 611
BseGI GGATG 2 cut(s) 30, 496
BseLI CCNNNNNNNGG 3 cut(s) 151, 536, 618
BseMI GCAATG 2 cut(s) 572, 890
BseMII CTCAG 4 cut(s) 102, 154, 288, 300
BseNI ACTGG 2 cut(s) 469, 707
BseRI GAGGAG 1 cut(s) 594
BseXI GCAGC 3 cut(s) 119, 766, 862
BshFI GGCC 3 cut(s) 476, 601, 835
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 3 cut(s) 442, 597, 613
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 3 cut(s) 151, 536, 618
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 3 cut(s) 476, 601, 835
Bsp1286I GDGCHC 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 441
Bsp143I GATC 1 cut(s) 859
BspACI CCGC 4 cut(s) 193, 566, 626, 836
BspANI GGCC 3 cut(s) 476, 601, 835
BspCNI CTCAG 4 cut(s) 103, 153, 289, 299
BspEI TCCGGA 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 570
BspTI CTTAAG 1 cut(s) 578
BsrDI GCAATG 2 cut(s) 572, 890
BsrI ACTGG 2 cut(s) 469, 707
BssECI CCNNGG 1 cut(s) 611
BssMI GATC 1 cut(s) 859
BssSI CACGAG 1 cut(s) 403
Bst2BI CACGAG 1 cut(s) 403
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 2 cut(s) 240, 308
Bst6I CTCTTC 3 cut(s) 30, 92, 337
BstAFI CTTAAG 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 6 cut(s) 111, 140, 286, 297, 450, 714
BstENI CCTNNNNNAGG 2 cut(s) 149, 534
BstF5I GGATG 2 cut(s) 30, 496
BstKTI GATC 1 cut(s) 862
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 1 cut(s) 859
BstMWI GCNNNNNNNGC 4 cut(s) 583, 607, 634, 889
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 2 cut(s) 723, 774
BstSCI CCNGG 3 cut(s) 596, 611, 754
BstV1I GCAGC 3 cut(s) 119, 766, 862
BsuRI GGCC 3 cut(s) 476, 601, 835
BtsCI GGATG 2 cut(s) 30, 496
BtsIMutI CAGTG 3 cut(s) 99, 462, 714
Cac8I GCNNGC 1 cut(s) 552
CaiI CAGNNNCTG 1 cut(s) 556
Cfr13I GGNCC 2 cut(s) 569, 599
CseI GACGC 1 cut(s) 592
Csp6I GTAC 1 cut(s) 42
CviAII CATG 4 cut(s) 720, 771, 784, 819
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 6 cut(s) 111, 140, 286, 297, 450, 714
DpnI GATC 1 cut(s) 861
DpnII GATC 1 cut(s) 859
Eam1104I CTCTTC 3 cut(s) 30, 92, 337
EarI CTCTTC 3 cut(s) 30, 92, 337
EciI GGCGGA 1 cut(s) 615
Eco32I GATATC 1 cut(s) 816
Eco47I GGWCC 1 cut(s) 569
EcoNI CCTNNNNNAGG 2 cut(s) 149, 534
EcoRI GAATTC 2 cut(s) 739, 841
EcoRII CCWGG 1 cut(s) 754
EcoRV GATATC 1 cut(s) 816
FaeI CATG 4 cut(s) 723, 774, 787, 822
FaqI GGGAC 1 cut(s) 239
FatI CATG 4 cut(s) 719, 770, 783, 818
FauI CCCGC 1 cut(s) 559
FbaI TGATCA 1 cut(s) 859
Fnu4HI GCNGC 5 cut(s) 108, 194, 780, 836, 876
FokI GGATG 2 cut(s) 37, 503
Fsp4HI GCNGC 5 cut(s) 108, 194, 780, 836, 876
FspBI CTAG 3 cut(s) 86, 396, 644
GluI GCNGC 5 cut(s) 108, 194, 780, 836, 876
HaeIII GGCC 3 cut(s) 476, 601, 835
HapII CCGG 3 cut(s) 442, 597, 613
HgaI GACGC 1 cut(s) 592
Hin1II CATG 4 cut(s) 723, 774, 787, 822
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
HinfI GANTC 8 cut(s) 89, 115, 299, 329, 344, 392, 523, 622
HpaII CCGG 3 cut(s) 442, 597, 613
HphI GGTGA 2 cut(s) 360, 586
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 4 cut(s) 289, 298, 558, 738
Hpy188III TCNNGA 1 cut(s) 442
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 662
HpyCH4III ACNGT 2 cut(s) 240, 308
HpyCH4IV ACGT 1 cut(s) 826
HpyCH4V TGCA 6 cut(s) 158, 359, 550, 637, 689, 822
HpyF10VI GCNNNNNNNGC 4 cut(s) 583, 607, 634, 889
HpyF3I CTNAG 6 cut(s) 111, 140, 286, 297, 450, 714
HpySE526I ACGT 1 cut(s) 826
Hsp92II CATG 4 cut(s) 723, 774, 787, 822
Kpn2I TCCGGA 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 1 cut(s) 859
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 3 cut(s) 119, 766, 862
LweI GCATC 2 cut(s) 346, 481
MaeI CTAG 3 cut(s) 86, 396, 644
MaeII ACGT 1 cut(s) 826
MaeIII GTNAC 2 cut(s) 592, 709
MalI GATC 1 cut(s) 861
MboI GATC 1 cut(s) 859
MboII GAAGA 7 cut(s) 47, 73, 109, 324, 357, 443, 717
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 6 cut(s) 220, 498, 681, 739, 790, 841
MlyI GAGTC 4 cut(s) 124, 308, 323, 532
MnlI CCTC 7 cut(s) 487, 540, 612, 612, 615, 816, 825
MroI TCCGGA 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 6 cut(s) 203, 315, 414, 425, 579, 696
MspA1I CMGCKG 3 cut(s) 110, 779, 838
MspCI CTTAAG 1 cut(s) 578
MspI CCGG 3 cut(s) 442, 597, 613
MspR9I CCNGG 3 cut(s) 598, 613, 756
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 4 cut(s) 583, 607, 634, 889
NciI CCSGG 2 cut(s) 598, 613
NdeII GATC 1 cut(s) 859
NlaIII CATG 4 cut(s) 723, 774, 787, 822
NlaIV GGNNCC 1 cut(s) 570
NmuCI GTSAC 2 cut(s) 592, 709
NspI RCATGY 2 cut(s) 723, 774
PciI ACATGT 1 cut(s) 770
PcsI WCGNNNNNNNCGW 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 4 cut(s) 89, 344, 392, 622
PfoI TCCNGGA 1 cut(s) 754
PkrI GCNGC 5 cut(s) 109, 195, 781, 837, 877
PleI GAGTC 4 cut(s) 123, 307, 323, 531
PpsI GAGTC 4 cut(s) 123, 307, 323, 531
PscI ACATGT 1 cut(s) 770
PshBI ATTAAT 1 cut(s) 315
Psp1406I AACGTT 1 cut(s) 826
Psp6I CCWGG 1 cut(s) 754
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 1 cut(s) 570
PspPI GGNCC 2 cut(s) 569, 599
PstNI CAGNNNCTG 1 cut(s) 556
PvuII CAGCTG 2 cut(s) 110, 779
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 6 cut(s) 203, 315, 414, 425, 579, 696
SatI GCNGC 5 cut(s) 108, 194, 780, 836, 876
Sau3AI GATC 1 cut(s) 859
Sau96I GGNCC 2 cut(s) 569, 599
SchI GAGTC 4 cut(s) 124, 308, 323, 532
ScrFI CCNGG 3 cut(s) 598, 613, 756
SduI GDGCHC 1 cut(s) 74
SetI ASST 6 cut(s) 112, 156, 673, 695, 781, 829
SfaNI GCATC 2 cut(s) 346, 481
SinI GGWCC 1 cut(s) 569
SmlI CTYRAG 1 cut(s) 578
SmoI CTYRAG 1 cut(s) 578
Sse9I AATT 6 cut(s) 220, 498, 681, 739, 790, 841
SsiI CCGC 4 cut(s) 193, 566, 626, 836
SspI AATATT 2 cut(s) 457, 802
SspMI CTAG 3 cut(s) 86, 396, 644
StyD4I CCNGG 3 cut(s) 596, 611, 754
TaaI ACNGT 2 cut(s) 240, 308
TaiI ACGT 1 cut(s) 829
TaqI TCGA 4 cut(s) 234, 666, 830, 845
TasI AATT 6 cut(s) 220, 498, 681, 739, 790, 841
TatI WGTACW 1 cut(s) 41
TauI GCSGC 2 cut(s) 196, 838
TfiI GAWTC 4 cut(s) 89, 344, 392, 622
Tru1I TTAA 6 cut(s) 203, 315, 414, 425, 579, 696
Tru9I TTAA 6 cut(s) 203, 315, 414, 425, 579, 696
TscAI CASTG 3 cut(s) 99, 469, 714
TseFI GTSAC 2 cut(s) 592, 709
TseI GCWGC 3 cut(s) 107, 779, 875
Tsp45I GTSAC 2 cut(s) 592, 709
TspDTI ATGAA 4 cut(s) 189, 227, 256, 840
TspRI CASTG 3 cut(s) 99, 469, 714
Vha464I CTTAAG 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 569
VspI ATTAAT 1 cut(s) 315
XagI CCTNNNNNAGG 2 cut(s) 149, 534
XapI RAATTY 3 cut(s) 739, 790, 841
XceI RCATGY 2 cut(s) 723, 774
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 3 cut(s) 86, 396, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.