Rorug01G0417500

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002977
Physical Location & Seq
Forward (+)
51991714 .. 51992436
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0417500.1

Sequence Viewer

Length: 723 bp
ATGTTTAACGGGTACCAATTCTACGATTACGTTCCTGTTCCGGTTCCCGTCGAGCAGTACTTCCGCAATGGCCATGACACCGGCTTCTTCAGCTCCGACGAGTTCCGGATGTACTCCTACAAAATCAAGCGCTGCCCGAGAATGCGCAGCCACGACTGGACCGACTGCCCCTACGCCCATCGCGGCGAGAAAGCACAGCGCCGCGACCCGCGTAGGTATTCCTACGCCGCCATAGTCTGCCCGGCCTTCCGCAACGGCGTCTGCTACAAGGGCGACGCGTGCGAGTACGCGCACGGGGTGTTCGAGTACTGGCTCCACCCTGCGCGTTACCGCACGCGCGCCTGCAATGCGGGCCTGTTGTGCACCCGCAAGGTCTGCTTCTTTGCTCACTCCTCGGACCAGCTGCGGGTCCCGCCACCCGAGTCGACCAAATCGTTCAAGTGTCGACAGCACCACAACAACTATGTCTATCGCCCCGTCGGAGATCACTTGCTGATGAGCGGTGCCAATGGAGCCACCTCAGTGCGGTCGCCAGAACGGTTGGCGACAAATAACAATGTTATTGTCGCCGACAGGGTCTCGGAATTTTTGAGCAGTTTGAGGGCATTGAAGTTAAGTGATCAGGAGGGCAATGGTGGTAGTGGTGAGGTGGATATGAGGGTTGACGAAAATGGGCTGCCGGAAACTTTGGAGGTTGATTGGGTTTCGGAGCTGTTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

240

Amino Acids

27.62

Weight (kDa)

8.33

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_AtC3H23 PF25512 34 - 67 2.2e-19 AtC3H23-like, CCCH zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 146
Acc65I GGTACC 1 cut(s) 12
AccB1I GGYRCC 2 cut(s) 12, 503
AccBSI CCGCTC 1 cut(s) 501
AccI GTMKAC 2 cut(s) 425, 445
AccII CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
AccIII TCCGGA 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 1 cut(s) 584
AcuI CTGAAG 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 258
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 5 cut(s) 14, 59, 113, 287, 308
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 406, 525
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 2 cut(s) 439, 610
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 3 cut(s) 93, 403, 712
AluI AGCT 3 cut(s) 93, 403, 712
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 583
Alw44I GTGCAC 1 cut(s) 361
Ama87I CYCGRG 2 cut(s) 136, 419
Aor13HI TCCGGA 1 cut(s) 105
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 3 cut(s) 70, 243, 352
ApaLI GTGCAC 1 cut(s) 361
ApeKI GCWGC 4 cut(s) 132, 147, 403, 676
ApoI RAATTY 1 cut(s) 584
Asp718I GGTACC 1 cut(s) 12
AspLEI GCGC 7 cut(s) 132, 147, 201, 292, 325, 339, 341
AspS9I GGNCC 4 cut(s) 159, 352, 397, 409
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 656
AvaI CYCGRG 2 cut(s) 136, 419
AvaII GGWCC 3 cut(s) 159, 397, 409
BaeGI GKGCMC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 72
BanI GGYRCC 2 cut(s) 12, 503
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 4 cut(s) 119, 159, 390, 663
BccI CCATC 1 cut(s) 186
BceAI ACGGC 1 cut(s) 271
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 583
BfoI RGCGCY 2 cut(s) 133, 202
BisI GCNGC 7 cut(s) 133, 148, 184, 202, 228, 404, 677
BlsI GCNGC 7 cut(s) 134, 149, 185, 203, 229, 405, 678
BmcAI AGTACT 2 cut(s) 59, 308
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 3 cut(s) 159, 397, 409
BmeT110I CYCGRG 2 cut(s) 136, 419
BmgT120I GGNCC 4 cut(s) 159, 352, 397, 409
BmiI GGNNCC 7 cut(s) 14, 45, 314, 410, 411, 505, 514
BmrFI CCNGG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 583
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 2 cut(s) 40, 105
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 525
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 161, 314
Bse3DI GCAATG 3 cut(s) 73, 352, 637
BseAI TCCGGA 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 406, 525
BseMI GCAATG 3 cut(s) 73, 352, 637
BseMII CTCAG 1 cut(s) 534
BseNI ACTGG 2 cut(s) 161, 314
BsePI GCGCGC 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 382
BseSI GKGCMC 1 cut(s) 365
BseXI GCAGC 4 cut(s) 119, 159, 390, 663
Bsh1236I CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
Bsh1285I CGRYCG 1 cut(s) 530
BshFI GGCC 3 cut(s) 72, 245, 354
BshNI GGYRCC 2 cut(s) 12, 503
BsiEI CGRYCG 1 cut(s) 530
BsiHKAI GWGCWC 1 cut(s) 365
BsiHKCI CYCGRG 2 cut(s) 136, 419
BsiSI CCGG 5 cut(s) 41, 81, 106, 242, 680
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 406, 525
BsmAI GTCTC 1 cut(s) 583
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 3 cut(s) 72, 245, 354
Bso31I GGTCTC 1 cut(s) 583
BsoBI CYCGRG 2 cut(s) 136, 419
Bsp1286I GDGCHC 1 cut(s) 365
Bsp13I TCCGGA 1 cut(s) 105
Bsp143I GATC 2 cut(s) 484, 619
BspANI GGCC 3 cut(s) 72, 245, 354
BspCNI CTCAG 1 cut(s) 533
BspEI TCCGGA 1 cut(s) 105
BspFNI CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
BspLI GGNNCC 7 cut(s) 14, 45, 314, 410, 411, 505, 514
BspT107I GGYRCC 2 cut(s) 12, 503
BspTNI GGTCTC 1 cut(s) 583
BsrBI CCGCTC 1 cut(s) 501
BsrDI GCAATG 3 cut(s) 73, 352, 637
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 2 cut(s) 161, 314
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 393
BssHII GCGCGC 1 cut(s) 337
BssMI GATC 2 cut(s) 484, 619
BssNI GRCGYC 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 540
BstACI GRCGYC 1 cut(s) 258
BstAPI GCANNNNNTGC 1 cut(s) 375
BstC8I GCNNGC 5 cut(s) 280, 335, 339, 343, 352
BstDEI CTNAG 1 cut(s) 520
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
BstH2I RGCGCY 2 cut(s) 133, 202
BstHHI GCGC 7 cut(s) 132, 147, 201, 292, 325, 339, 341
BstKTI GATC 2 cut(s) 487, 622
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 2 cut(s) 484, 619
BstMCI CGRYCG 1 cut(s) 530
BstMWI GCNNNNNNNGC 9 cut(s) 90, 270, 279, 347, 351, 360, 375, 412, 512
BstSCI CCNGG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 365
BstUI CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
BstV1I GCAGC 4 cut(s) 119, 159, 390, 663
BsuRI GGCC 3 cut(s) 72, 245, 354
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 528
Cac8I GCNNGC 5 cut(s) 280, 335, 339, 343, 352
CfoI GCGC 7 cut(s) 132, 147, 201, 292, 325, 339, 341
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 4 cut(s) 159, 352, 397, 409
CseI GACGC 2 cut(s) 247, 284
Csp6I GTAC 5 cut(s) 13, 58, 112, 286, 307
CviAII CATG 1 cut(s) 74
CviQI GTAC 5 cut(s) 13, 58, 112, 286, 307
DdeI CTNAG 1 cut(s) 520
DpnI GATC 2 cut(s) 486, 621
DpnII GATC 2 cut(s) 484, 619
DraIII CACNNNGTG 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 583
Eco47I GGWCC 3 cut(s) 159, 397, 409
Eco47III AGCGCT 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 73
Eco88I CYCGRG 2 cut(s) 136, 419
EcoO109I RGGNCCY 1 cut(s) 409
FaeI CATG 1 cut(s) 77
FaiI YATR 4 cut(s) 75, 233, 465, 656
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 395
FatI CATG 1 cut(s) 73
FauI CCCGC 5 cut(s) 216, 343, 374, 399, 420
FbaI TGATCA 1 cut(s) 619
FblI GTMKAC 2 cut(s) 425, 445
Fnu4HI GCNGC 7 cut(s) 133, 148, 184, 202, 228, 404, 677
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 7 cut(s) 133, 148, 184, 202, 228, 404, 677
FspI TGCGCA 1 cut(s) 146
GlaI GCGC 7 cut(s) 131, 146, 200, 291, 324, 338, 340
GluI GCNGC 7 cut(s) 133, 148, 184, 202, 228, 404, 677
HaeII RGCGCY 2 cut(s) 133, 202
HaeIII GGCC 3 cut(s) 72, 245, 354
HapII CCGG 5 cut(s) 41, 81, 106, 242, 680
HgaI GACGC 2 cut(s) 247, 284
HhaI GCGC 7 cut(s) 132, 147, 201, 292, 325, 339, 341
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 7 cut(s) 130, 145, 199, 290, 323, 337, 339
HinP1I GCGC 7 cut(s) 130, 145, 199, 290, 323, 337, 339
HincII GTYRAC 3 cut(s) 426, 446, 664
HindII GTYRAC 3 cut(s) 426, 446, 664
HinfI GANTC 1 cut(s) 422
HpaII CCGG 5 cut(s) 41, 81, 106, 242, 680
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 4 cut(s) 363, 426, 446, 664
Hpy188I TCNGA 5 cut(s) 97, 397, 482, 583, 709
Hpy188III TCNNGA 2 cut(s) 106, 623
Hpy8I GTNNAC 4 cut(s) 363, 426, 446, 664
Hpy99I CGWCG 4 cut(s) 53, 101, 278, 482
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 540
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 3 cut(s) 345, 363, 718
HpyF10VI GCNNNNNNNGC 9 cut(s) 90, 270, 279, 347, 351, 360, 375, 412, 512
HpyF3I CTNAG 1 cut(s) 520
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 7 cut(s) 130, 145, 199, 290, 323, 337, 339
KflI GGGWCCC 1 cut(s) 409
Kpn2I TCCGGA 1 cut(s) 105
KpnI GGTACC 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 2 cut(s) 484, 619
LmnI GCTCC 4 cut(s) 98, 318, 512, 709
Lsp1109I GCAGC 4 cut(s) 119, 159, 390, 663
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 326
MalI GATC 2 cut(s) 486, 621
MbiI CCGCTC 1 cut(s) 501
MboI GATC 2 cut(s) 484, 619
MboII GAAGA 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 72
MluCI AATT 2 cut(s) 17, 584
MluI ACGCGT 1 cut(s) 276
MluNI TGGCCA 1 cut(s) 72
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 120, 460
MnlI CCTC 7 cut(s) 403, 529, 594, 619, 640, 651, 685
Mox20I TGGCCA 1 cut(s) 72
MroI TCCGGA 1 cut(s) 105
MscI TGGCCA 1 cut(s) 72
MseI TTAA 2 cut(s) 6, 614
MslI CAYNNNNRTG 1 cut(s) 521
Msp20I TGGCCA 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 403
MspI CCGG 5 cut(s) 41, 81, 106, 242, 680
MspR9I CCNGG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 147
MvnI CGCG 8 cut(s) 183, 204, 211, 278, 290, 325, 337, 339
MwoI GCNNNNNNNGC 9 cut(s) 90, 270, 279, 347, 351, 360, 375, 412, 512
NciI CCSGG 1 cut(s) 242
NdeII GATC 2 cut(s) 484, 619
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 7 cut(s) 14, 45, 314, 410, 411, 505, 514
NsbI TGCGCA 1 cut(s) 146
OliI CACNNNNGTG 1 cut(s) 521
PauI GCGCGC 1 cut(s) 337
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 300, 431
PctI GAATGC 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 575
PkrI GCNGC 7 cut(s) 134, 149, 185, 203, 229, 405, 678
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PpuMI RGGWCCY 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 409
PspN4I GGNNCC 7 cut(s) 14, 45, 314, 410, 411, 505, 514
PspPI GGNCC 4 cut(s) 159, 352, 397, 409
PspPPI RGGWCCY 1 cut(s) 409
PsyI GACNNNGTC 1 cut(s) 575
PteI GCGCGC 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 403
RsaI GTAC 5 cut(s) 14, 59, 113, 287, 308
RsaNI GTAC 5 cut(s) 13, 58, 112, 286, 307
RseI CAYNNNNRTG 1 cut(s) 521
SalI GTCGAC 2 cut(s) 424, 444
SaqAI TTAA 2 cut(s) 6, 614
SatI GCNGC 7 cut(s) 133, 148, 184, 202, 228, 404, 677
Sau3AI GATC 2 cut(s) 484, 619
Sau96I GGNCC 4 cut(s) 159, 352, 397, 409
ScaI AGTACT 2 cut(s) 59, 308
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 365
SetI ASST 9 cut(s) 33, 95, 218, 375, 405, 521, 651, 696, 714
SinI GGWCC 3 cut(s) 159, 397, 409
SmiMI CAYNNNNRTG 1 cut(s) 521
Sse9I AATT 2 cut(s) 17, 584
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 540
TaiI ACGT 1 cut(s) 33
TaqI TCGA 4 cut(s) 51, 303, 425, 445
TaqII GACCGA 1 cut(s) 176
TasI AATT 2 cut(s) 17, 584
TatI WGTACW 3 cut(s) 57, 111, 306
TauI GCSGC 3 cut(s) 186, 204, 230
Tru1I TTAA 2 cut(s) 6, 614
Tru9I TTAA 2 cut(s) 6, 614
TscAI CASTG 1 cut(s) 528
TseI GCWGC 4 cut(s) 132, 147, 403, 676
TspRI CASTG 1 cut(s) 528
Tth111I GACNNNGTC 1 cut(s) 575
VneI GTGCAC 1 cut(s) 361
VpaK11BI GGWCC 3 cut(s) 159, 397, 409
XapI RAATTY 1 cut(s) 584
XmiI GTMKAC 2 cut(s) 425, 445
ZrmI AGTACT 2 cut(s) 59, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.