Rroxscaffold_4G00279670

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002977
Physical Location & Seq
Reverse (-)
2411353 .. 2412036
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279670.1

Sequence Viewer

Length: 684 bp
ATGCAGAGCACTGACGAGTTAAAGAACGAGCTTATGTACTCCAGTCTTGAACTAGAATCAGTAAAATGCAAAGTTACCGAGAGTCAAGAAAATGTGACCAACTTGCTCAATCTGTTAGAGGTTGCATACAAAGAAAGAGATGAAGCCAGAGACCAGTTGAAGAAAATATTTGAGAAGATGAACCCCAATTGTACTCCAATTGATCAACTGCCAAATCATGTAGTCCAGTCCGTTAGCCCCCAAATTTTGATGCCGACGACTACAAAAGAAAACTTAAGCTTAACTGAATCCAACAGTCCCTCTTCTGTTGATTCCTTATTCGATCATGCAGTTTCTTCACCAGAGTTTCCAAGCATCATTATGCCTGATTCAAGCACCATGGGTTTTGTTAATGTGAAGCAGCCTAATGCGGTTCAACAATTTAATTTGGGCACTACTAATGTTACCATGAGTACCCAAACTGATACAGCTTCTGAAATAGTTAACGATTTTGCTAAAGGAAAGACTTTACCTCAGAAAGGGAAACTCATGCAAGCTGTGAAGGAAGCTGGTCCATTGCTTCGGACGCTTCTTATTGCTGGTCCCCCATTGCCCCAGTGGCGAAACCCCCTCCTCCTTTGCAGCATCCTTTCAAAATCCCTCCCGTTGCTCCGATCAACGGTTGTACTACAGCTTCTCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

227

Amino Acids

25.1

Weight (kDa)

5.3

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 2 - 203 4.6e-34 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 410
AcsI RAATTY 1 cut(s) 243
AfaI GTAC 4 cut(s) 38, 193, 454, 666
AfiI CCNNNNNNNGG 2 cut(s) 518, 658
AflII CTTAAG 1 cut(s) 274
AgsI TTSAA 5 cut(s) 50, 160, 372, 416, 633
AluBI AGCT 6 cut(s) 31, 279, 470, 536, 548, 673
AluI AGCT 6 cut(s) 31, 279, 470, 536, 548, 673
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 144
AlwNI CAGNNNCTG 1 cut(s) 473
ApeKI GCWGC 2 cut(s) 400, 621
ApoI RAATTY 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 551, 581
AsuHPI GGTGA 1 cut(s) 330
AvaII GGWCC 2 cut(s) 551, 581
BaeGI GKGCMC 1 cut(s) 434
BarI GAAGNNNNNNTAC 1 cut(s) 657
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 412, 633
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 668
BfrI CTTAAG 1 cut(s) 274
BglI GCCNNNNNGGC 1 cut(s) 598
BisI GCNGC 2 cut(s) 401, 622
BlsI GCNGC 2 cut(s) 402, 623
Bme18I GGWCC 2 cut(s) 551, 581
BmgT120I GGNCC 2 cut(s) 551, 581
BmiI GGNNCC 1 cut(s) 583
BmrI ACTGGG 1 cut(s) 589
BmsI GCATC 3 cut(s) 240, 363, 633
BmuI ACTGGG 1 cut(s) 589
BpmI CTGGAG 1 cut(s) 25
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 378
BsaXI ACNNNNNCTCC 1 cut(s) 660
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 658
Bse1I ACTGG 4 cut(s) 42, 154, 226, 595
Bse3DI GCAATG 2 cut(s) 554, 587
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 624
BseLI CCNNNNNNNGG 2 cut(s) 518, 658
BseMI GCAATG 2 cut(s) 554, 587
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 4 cut(s) 42, 154, 226, 595
BseRI GAGGAG 2 cut(s) 602, 668
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 2 cut(s) 412, 633
BsiHKAI GWGCWC 1 cut(s) 11
BslFI GGGAC 2 cut(s) 282, 567
BslI CCNNNNNNNGG 2 cut(s) 518, 658
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 2 cut(s) 282, 567
Bso31I GGTCTC 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 11, 434
Bsp143I GATC 3 cut(s) 202, 322, 653
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 1 cut(s) 410
BspCNI CTCAG 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 583
BspTI CTTAAG 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 144
BsrDI GCAATG 2 cut(s) 554, 587
BsrI ACTGG 4 cut(s) 42, 154, 226, 595
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 3 cut(s) 202, 322, 653
BssT1I CCWWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 296, 661
Bst6I CTCTTC 1 cut(s) 307
BstAFI CTTAAG 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 1 cut(s) 513
BstDSI CCRYGG 1 cut(s) 378
BstENI CCTNNNNNAGG 1 cut(s) 516
BstF5I GGATG 1 cut(s) 624
BstKTI GATC 3 cut(s) 205, 325, 656
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 3 cut(s) 202, 322, 653
BstMWI GCNNNNNNNGC 2 cut(s) 565, 598
BstSFI CTRYAG 1 cut(s) 668
BstSLI GKGCMC 1 cut(s) 434
BstV1I GCAGC 2 cut(s) 412, 633
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 9, 602
Cac8I GCNNGC 1 cut(s) 534
CaiI CAGNNNCTG 1 cut(s) 473
Cfr13I GGNCC 2 cut(s) 551, 581
CseI GACGC 1 cut(s) 574
Csp6I GTAC 4 cut(s) 37, 192, 453, 665
CviAII CATG 5 cut(s) 218, 326, 379, 448, 529
CviJI RGCY 9 cut(s) 31, 146, 237, 279, 403, 470, 536, 548, 673
CviKI_1 RGCY 9 cut(s) 31, 146, 237, 279, 403, 470, 536, 548, 673
CviQI GTAC 4 cut(s) 37, 192, 453, 665
DdeI CTNAG 1 cut(s) 513
DpnI GATC 3 cut(s) 204, 324, 655
DpnII GATC 3 cut(s) 202, 322, 653
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 551, 581
EcoNI CCTNNNNNAGG 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 5 cut(s) 221, 329, 382, 451, 532
FaiI YATR 8 cut(s) 35, 127, 219, 327, 362, 380, 449, 530
FaqI GGGAC 2 cut(s) 282, 567
FatI CATG 5 cut(s) 217, 325, 378, 447, 528
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 401, 622
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 2 cut(s) 401, 622
FspBI CTAG 1 cut(s) 53
GluI GCNGC 2 cut(s) 401, 622
GsuI CTGGAG 1 cut(s) 25
HgaI GACGC 1 cut(s) 574
Hin1II CATG 5 cut(s) 221, 329, 382, 451, 532
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 5 cut(s) 56, 82, 287, 311, 368
HpaI GTTAAC 1 cut(s) 484
HphI GGTGA 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 4 cut(s) 475, 516, 564, 653
Hpy188III TCNNGA 2 cut(s) 47, 86
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 535
HpyCH4III ACNGT 2 cut(s) 296, 661
HpyCH4V TGCA 6 cut(s) 4, 69, 125, 329, 532, 621
HpyF10VI GCNNNNNNNGC 2 cut(s) 565, 598
HpyF3I CTNAG 1 cut(s) 513
Hsp92II CATG 5 cut(s) 221, 329, 382, 451, 532
Ksp22I TGATCA 1 cut(s) 202
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 3 cut(s) 202, 322, 653
LmnI GCTCC 1 cut(s) 654
LpnPI CCDG 9 cut(s) 55, 160, 167, 239, 354, 378, 534, 564, 608
Lsp1109I GCAGC 2 cut(s) 412, 633
LweI GCATC 3 cut(s) 240, 363, 633
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 3 cut(s) 73, 94, 442
MalI GATC 3 cut(s) 204, 324, 655
MboI GATC 3 cut(s) 202, 322, 653
MboII GAAGA 4 cut(s) 172, 187, 294, 327
MfeI CAATTG 2 cut(s) 187, 198
MhlI GDGCHC 2 cut(s) 11, 434
MluCI AATT 5 cut(s) 187, 198, 243, 419, 424
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 6 cut(s) 112, 310, 522, 620, 623, 650
MseI TTAA 6 cut(s) 20, 275, 281, 390, 423, 483
MslI CAYNNNNRTG 1 cut(s) 359
MspCI CTTAAG 1 cut(s) 274
MunI CAATTG 2 cut(s) 187, 198
MwoI GCNNNNNNNGC 2 cut(s) 565, 598
NcoI CCATGG 1 cut(s) 378
NdeII GATC 3 cut(s) 202, 322, 653
NlaIII CATG 5 cut(s) 221, 329, 382, 451, 532
NlaIV GGNNCC 1 cut(s) 583
NmuCI GTSAC 1 cut(s) 94
PfeI GAWTC 4 cut(s) 56, 287, 311, 368
PkrI GCNGC 2 cut(s) 402, 623
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 583
PspPI GGNCC 2 cut(s) 551, 581
PstNI CAGNNNCTG 1 cut(s) 473
RsaI GTAC 4 cut(s) 38, 193, 454, 666
RsaNI GTAC 4 cut(s) 37, 192, 453, 665
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 6 cut(s) 20, 275, 281, 390, 423, 483
SatI GCNGC 2 cut(s) 401, 622
Sau3AI GATC 3 cut(s) 202, 322, 653
Sau96I GGNCC 2 cut(s) 551, 581
SchI GAGTC 1 cut(s) 91
SduI GDGCHC 2 cut(s) 11, 434
SetI ASST 8 cut(s) 33, 123, 281, 472, 514, 538, 550, 675
SfaNI GCATC 3 cut(s) 240, 363, 633
SfcI CTRYAG 1 cut(s) 668
SinI GGWCC 2 cut(s) 551, 581
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 5 cut(s) 187, 198, 243, 419, 424
SsiI CCGC 1 cut(s) 410
SspI AATATT 1 cut(s) 168
SspMI CTAG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 296, 661
TaqI TCGA 1 cut(s) 321
TasI AATT 5 cut(s) 187, 198, 243, 419, 424
TatI WGTACW 3 cut(s) 36, 191, 664
TfiI GAWTC 4 cut(s) 56, 287, 311, 368
Tru1I TTAA 6 cut(s) 20, 275, 281, 390, 423, 483
Tru9I TTAA 6 cut(s) 20, 275, 281, 390, 423, 483
TscAI CASTG 2 cut(s) 16, 602
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 2 cut(s) 400, 621
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 156, 194
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 2 cut(s) 16, 602
Vha464I CTTAAG 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 551, 581
XagI CCTNNNNNAGG 1 cut(s) 516
XapI RAATTY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 594
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.