RLG00000026330

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002977
Physical Location & Seq
Reverse (-)
2215592 .. 2217343
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026330

Sequence Viewer

Length: 933 bp
ATGGAGGAGTTGGGTTCTATATGGACTACTACATATCAAGAGAGCACTGACGAGTTAAAGAACGAGCTTATGTACTCCAGTCTTGAACTAGAATCAGTAAAATGCAAAGTTACCGAGAGTCAAGAAAATGTGACCAACTTGCTCAATCTGTTAGAGGTTGCATACAAAGAAAGAGACGAAGCCAGAGACCAGTTGAAGAAAATCTTTGAGAAGATGAACCCCAATTGTACTCCAATTGATCAACTGCCAAATCATGTAGTCCAGTCTGTTAGCCCCCAAATTTTGATGCCGACGACTACAAAAGAAAACTTAAGCTTAACTGAATCCAACAGTCCCTCTTCTGTTGATTCCTTATTCGATCATGCAGTTTCTTCACCAGAGTTTCCAAGCATCATTATGCCTGATTCAAGCACCATGGGTTTTGTTAATGTGAAGCAGCCTAATGCGGTTCAACAATTTAATTTGGGCACTACTAATGTTACCATGAGTGCCCAAACTGATACAGCTTCTGAAATAGTTAACGATTTTGCTAAAGGAAAGACGTTACCTCAGAAAGGGAAACTCATGCAAGCTGTGAAGGAAGCTGGTCCATTGCTTCGGACGCTTCTTATTGCTGGTCCCCCATTGCCCCAGTGGCGAAACCCCCCTCCTCCTTTGCAGCAGCCTTTCAAAATCCCACCTGTTGCTCCGATCAACGGTTGTACTACAGCTTCTCCTCTAAGCTTTAATCAGAAACCATTTGCCATTTCAAATCCTACAACTAGCTATTTCAATGTGGCTCATACATCTTCAGCTGCCAATGCCATGTTGAGTTTCAACACTGTCCTTCCTTCTGCTGGTGTTTCATGCTTCAATAACTCAAGAATGATGGAGACTTCAAACTCTGGTTTCGACCACCAAATCCCATTTGCCAAGCGGCGAAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

311

Amino Acids

34.14

Weight (kDa)

5.66

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 14 - 235 2.3e-39 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 446, 916
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 3 cut(s) 74, 229, 703
AfiI CCNNNNNNNGG 3 cut(s) 554, 695, 836
AflII CTTAAG 1 cut(s) 310
AluBI AGCT 9 cut(s) 67, 315, 506, 572, 584, 710, 723, 765, 794
AluI AGCT 9 cut(s) 67, 315, 506, 572, 584, 710, 723, 765, 794
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 3 cut(s) 168, 180, 866
AlwNI CAGNNNCTG 1 cut(s) 509
ApeKI GCWGC 4 cut(s) 436, 658, 661, 794
ApoI RAATTY 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 587, 617
AsuHPI GGTGA 1 cut(s) 366
AvaII GGWCC 2 cut(s) 587, 617
BaeGI GKGCMC 2 cut(s) 470, 493
BarI GAAGNNNNNNTAC 2 cut(s) 694, 726
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 4 cut(s) 448, 670, 673, 781
BccI CCATC 1 cut(s) 862
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 3 cut(s) 168, 180, 866
BfaI CTAG 2 cut(s) 89, 762
BfmI CTRYAG 1 cut(s) 705
BfrI CTTAAG 1 cut(s) 310
BglI GCCNNNNNGGC 1 cut(s) 634
BisI GCNGC 5 cut(s) 437, 659, 662, 795, 917
BlsI GCNGC 5 cut(s) 438, 660, 663, 796, 918
Bme18I GGWCC 2 cut(s) 587, 617
BmgT120I GGNCC 2 cut(s) 587, 617
BmiI GGNNCC 1 cut(s) 619
BmrI ACTGGG 1 cut(s) 625
BmsI GCATC 2 cut(s) 276, 399
BmuI ACTGGG 1 cut(s) 625
BpmI CTGGAG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 844
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 414
BsaXI ACNNNNNCTCC 2 cut(s) 697, 727
Bsc4I CCNNNNNNNGG 3 cut(s) 554, 695, 836
Bse1I ACTGG 4 cut(s) 78, 190, 262, 631
Bse3DI GCAATG 2 cut(s) 590, 623
BseDI CCNNGG 1 cut(s) 414
BseLI CCNNNNNNNGG 3 cut(s) 554, 695, 836
BseMI GCAATG 2 cut(s) 590, 623
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 4 cut(s) 78, 190, 262, 631
BseRI GAGGAG 3 cut(s) 20, 639, 705
BseSI GKGCMC 2 cut(s) 470, 493
BseXI GCAGC 4 cut(s) 448, 670, 673, 781
BsiHKAI GWGCWC 1 cut(s) 47
BslFI GGGAC 2 cut(s) 318, 603
BslI CCNNNNNNNGG 3 cut(s) 554, 695, 836
BsmAI GTCTC 3 cut(s) 168, 180, 866
BsmBI CGTCTC 1 cut(s) 168
BsmFI GGGAC 2 cut(s) 318, 603
Bso31I GGTCTC 1 cut(s) 180
Bsp1286I GDGCHC 3 cut(s) 47, 470, 493
Bsp143I GATC 3 cut(s) 238, 358, 690
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 2 cut(s) 446, 916
BspCNI CTCAG 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 619
BspTI CTTAAG 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 180
BsrDI GCAATG 2 cut(s) 590, 623
BsrI ACTGG 4 cut(s) 78, 190, 262, 631
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 3 cut(s) 238, 358, 690
BssT1I CCWWGG 1 cut(s) 414
Bst4CI ACNGT 3 cut(s) 332, 698, 823
Bst6I CTCTTC 1 cut(s) 343
BstAFI CTTAAG 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 2 cut(s) 549, 719
BstDSI CCRYGG 1 cut(s) 414
BstENI CCTNNNNNAGG 1 cut(s) 552
BstKTI GATC 3 cut(s) 241, 361, 693
BstMAI GTCTC 3 cut(s) 168, 180, 866
BstMBI GATC 3 cut(s) 238, 358, 690
BstMWI GCNNNNNNNGC 4 cut(s) 601, 634, 800, 922
BstSFI CTRYAG 1 cut(s) 705
BstSLI GKGCMC 2 cut(s) 470, 493
BstV1I GCAGC 4 cut(s) 448, 670, 673, 781
BtgI CCRYGG 1 cut(s) 414
BtsIMutI CAGTG 3 cut(s) 45, 638, 819
Cac8I GCNNGC 1 cut(s) 570
CaiI CAGNNNCTG 1 cut(s) 509
Cfr13I GGNCC 2 cut(s) 587, 617
CseI GACGC 1 cut(s) 610
Csp6I GTAC 3 cut(s) 73, 228, 702
CviAII CATG 7 cut(s) 254, 362, 415, 484, 565, 805, 846
CviQI GTAC 3 cut(s) 73, 228, 702
DdeI CTNAG 2 cut(s) 549, 719
DpnI GATC 3 cut(s) 240, 360, 692
DpnII GATC 3 cut(s) 238, 358, 690
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 587, 617
Eco57I CTGAAG 1 cut(s) 774
EcoNI CCTNNNNNAGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 7 cut(s) 257, 365, 418, 487, 568, 808, 849
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 2 cut(s) 318, 603
FatI CATG 7 cut(s) 253, 361, 414, 483, 564, 804, 845
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 5 cut(s) 437, 659, 662, 795, 917
Fsp4HI GCNGC 5 cut(s) 437, 659, 662, 795, 917
FspBI CTAG 2 cut(s) 89, 762
GluI GCNGC 5 cut(s) 437, 659, 662, 795, 917
GsuI CTGGAG 1 cut(s) 61
HgaI GACGC 1 cut(s) 610
Hin1II CATG 7 cut(s) 257, 365, 418, 487, 568, 808, 849
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 2 cut(s) 313, 721
HinfI GANTC 5 cut(s) 92, 118, 323, 347, 404
HpaI GTTAAC 1 cut(s) 520
HphI GGTGA 1 cut(s) 366
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 5 cut(s) 511, 552, 600, 690, 732
Hpy188III TCNNGA 4 cut(s) 38, 83, 122, 861
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 1 cut(s) 295
HpyAV CCTTC 4 cut(s) 571, 836, 840, 915
HpyCH4III ACNGT 3 cut(s) 332, 698, 823
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 5 cut(s) 105, 161, 365, 568, 658
HpyF10VI GCNNNNNNNGC 4 cut(s) 601, 634, 800, 922
HpyF3I CTNAG 2 cut(s) 549, 719
HpySE526I ACGT 1 cut(s) 542
Hsp92II CATG 7 cut(s) 257, 365, 418, 487, 568, 808, 849
Ksp22I TGATCA 1 cut(s) 238
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 3 cut(s) 238, 358, 690
LmnI GCTCC 1 cut(s) 691
Lsp1109I GCAGC 4 cut(s) 448, 670, 673, 781
LweI GCATC 2 cut(s) 276, 399
MaeI CTAG 2 cut(s) 89, 762
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 4 cut(s) 109, 130, 478, 543
MalI GATC 3 cut(s) 240, 360, 692
MboI GATC 3 cut(s) 238, 358, 690
MboII GAAGA 5 cut(s) 208, 223, 330, 363, 780
MfeI CAATTG 2 cut(s) 223, 234
MhlI GDGCHC 3 cut(s) 47, 470, 493
MluCI AATT 5 cut(s) 223, 234, 279, 455, 460
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 6 cut(s) 148, 346, 558, 657, 660, 726
MseI TTAA 7 cut(s) 56, 311, 317, 426, 459, 519, 726
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 794
MspCI CTTAAG 1 cut(s) 310
MunI CAATTG 2 cut(s) 223, 234
MwoI GCNNNNNNNGC 4 cut(s) 601, 634, 800, 922
NcoI CCATGG 1 cut(s) 414
NdeII GATC 3 cut(s) 238, 358, 690
NlaIII CATG 7 cut(s) 257, 365, 418, 487, 568, 808, 849
NlaIV GGNNCC 1 cut(s) 619
NmuCI GTSAC 1 cut(s) 130
PfeI GAWTC 4 cut(s) 92, 323, 347, 404
PkrI GCNGC 5 cut(s) 438, 660, 663, 796, 918
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 619
PspPI GGNCC 2 cut(s) 587, 617
PstNI CAGNNNCTG 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 3 cut(s) 74, 229, 703
RsaNI GTAC 3 cut(s) 73, 228, 702
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 7 cut(s) 56, 311, 317, 426, 459, 519, 726
SatI GCNGC 5 cut(s) 437, 659, 662, 795, 917
Sau3AI GATC 3 cut(s) 238, 358, 690
Sau96I GGNCC 2 cut(s) 587, 617
SchI GAGTC 1 cut(s) 127
SduI GDGCHC 3 cut(s) 47, 470, 493
SfaNI GCATC 2 cut(s) 276, 399
SfcI CTRYAG 1 cut(s) 705
SinI GGWCC 2 cut(s) 587, 617
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 310, 859
SmoI CTYRAG 2 cut(s) 310, 859
Sse9I AATT 5 cut(s) 223, 234, 279, 455, 460
SsiI CCGC 2 cut(s) 446, 916
SspMI CTAG 2 cut(s) 89, 762
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 3 cut(s) 332, 698, 823
TaiI ACGT 1 cut(s) 545
TaqI TCGA 2 cut(s) 357, 891
TasI AATT 5 cut(s) 223, 234, 279, 455, 460
TatI WGTACW 3 cut(s) 72, 227, 701
TauI GCSGC 1 cut(s) 919
TfiI GAWTC 4 cut(s) 92, 323, 347, 404
Tru1I TTAA 7 cut(s) 56, 311, 317, 426, 459, 519, 726
Tru9I TTAA 7 cut(s) 56, 311, 317, 426, 459, 519, 726
TscAI CASTG 3 cut(s) 52, 638, 826
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 4 cut(s) 436, 658, 661, 794
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 230, 834
TspRI CASTG 3 cut(s) 52, 638, 826
Vha464I CTTAAG 1 cut(s) 310
VpaK11BI GGWCC 2 cut(s) 587, 617
XagI CCTNNNNNAGG 1 cut(s) 552
XapI RAATTY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 630
XspI CTAG 2 cut(s) 89, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.