Rh1AG442700

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002977
Physical Location & Seq
Forward (+)
66393474 .. 66394421
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG442700.1

Sequence Viewer

Length: 948 bp
ATGGAAAGTACCCTTTTATTATATTTAACCAATTACTTGTTTGGAATTGACATGCAGAGCACTGACGAGTTAAAGAACGAGCTTATGTACTCCAGTCTTGAACTTGAATCAGTAAAATGCAAAGTTACCGAGAGTCAAGAAAATGTGACCAACTTGCTCAATCTGTTAGAGGTTGCATACAAAGAAAGAGATGAAGCCAGAGACCAGTTGAAGAAAATCTTTGAGAAGATGAACCCCAATTGTACTCCAATTGATCAACTGCCAAATCATGTAGTCCAGTCTGTTAGCCCCCAAATTTTGATGCCGACGACTACAAAAGAAAACTTAAGCTTAACTGAATCCAACAGTCCCTCTTCTGTTGATTCCTTATTCGATCATGCAGTTTCTTCACCAGAGTTTCCAAGCATCATTATGCCTGATTCAAGCACCATGGGTTTTGTTAATGTGAAGCAGCATAATGCGGTTCAACAATTTAATTTGGGCACTACTAATGTTACCATGAGTGCCCAAACTGATACAGCTTCTGAAATAGTTAACGATTTTGCTAAAGGAAAGACTTTACCTCAGAAAGGGAAACTCATGCAAGCTGTGAAGGAAGCTGGTCCATTGCTTCGGACGCTTCTTATTGCTGGTCCCCCATTGCCCCAGTGGCGAAACCCCCCTCCTCCTTTGCAGCAGCCTTTCAAAATCCCACCCGTTGCTCCGATCAACGGTTGTACTACAGCTTCTCCTCTAAGCTTTAATCAGAAACCATTTGCCATTTCAAATCCTACAACTAGCTATTTCAATGTGGCTCATACATCTTCAGCTGCCAATGCCATGTTGAGTTTCAACACTGTCCTTCCTTCTGCTGGTGTTTCATGCTTCAATAACTCAAGAATGATGGAGACTTCAAACTCTGGTTTCGACCACCAAATCCCATTTGCCAAGCGGCGAAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

315

Amino Acids

34.76

Weight (kDa)

5.99

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 19 - 240 1.7e-39 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 461, 931
AcsI RAATTY 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 789
AfaI GTAC 4 cut(s) 10, 89, 244, 718
AfiI CCNNNNNNNGG 3 cut(s) 569, 710, 851
AflII CTTAAG 1 cut(s) 325
AluBI AGCT 9 cut(s) 82, 330, 521, 587, 599, 725, 738, 780, 809
AluI AGCT 9 cut(s) 82, 330, 521, 587, 599, 725, 738, 780, 809
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 195, 881
AlwNI CAGNNNCTG 1 cut(s) 524
ApeKI GCWGC 4 cut(s) 451, 673, 676, 809
ApoI RAATTY 1 cut(s) 294
AspS9I GGNCC 2 cut(s) 602, 632
AsuHPI GGTGA 1 cut(s) 381
AvaII GGWCC 2 cut(s) 602, 632
BaeGI GKGCMC 2 cut(s) 485, 508
BarI GAAGNNNNNNTAC 2 cut(s) 709, 741
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 4 cut(s) 463, 685, 688, 796
BccI CCATC 1 cut(s) 877
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 195, 881
BfaI CTAG 1 cut(s) 777
BfmI CTRYAG 1 cut(s) 720
BfrI CTTAAG 1 cut(s) 325
BglI GCCNNNNNGGC 1 cut(s) 649
BisI GCNGC 5 cut(s) 452, 674, 677, 810, 932
BlsI GCNGC 5 cut(s) 453, 675, 678, 811, 933
Bme18I GGWCC 2 cut(s) 602, 632
BmgT120I GGNCC 2 cut(s) 602, 632
BmiI GGNNCC 1 cut(s) 634
BmrI ACTGGG 1 cut(s) 640
BmsI GCATC 2 cut(s) 291, 414
BmuI ACTGGG 1 cut(s) 640
BpmI CTGGAG 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 859
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 429
BsaXI ACNNNNNCTCC 2 cut(s) 712, 742
Bsc4I CCNNNNNNNGG 3 cut(s) 569, 710, 851
Bse1I ACTGG 4 cut(s) 93, 205, 277, 646
Bse3DI GCAATG 2 cut(s) 605, 638
BseDI CCNNGG 1 cut(s) 429
BseLI CCNNNNNNNGG 3 cut(s) 569, 710, 851
BseMI GCAATG 2 cut(s) 605, 638
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 4 cut(s) 93, 205, 277, 646
BseRI GAGGAG 2 cut(s) 654, 720
BseSI GKGCMC 2 cut(s) 485, 508
BseXI GCAGC 4 cut(s) 463, 685, 688, 796
BsiHKAI GWGCWC 1 cut(s) 62
BslFI GGGAC 2 cut(s) 333, 618
BslI CCNNNNNNNGG 3 cut(s) 569, 710, 851
BsmAI GTCTC 2 cut(s) 195, 881
BsmFI GGGAC 2 cut(s) 333, 618
Bso31I GGTCTC 1 cut(s) 195
Bsp1286I GDGCHC 3 cut(s) 62, 485, 508
Bsp143I GATC 3 cut(s) 253, 373, 705
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 2 cut(s) 461, 931
BspCNI CTCAG 1 cut(s) 577
BspLI GGNNCC 1 cut(s) 634
BspTI CTTAAG 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 195
BsrDI GCAATG 2 cut(s) 605, 638
BsrI ACTGG 4 cut(s) 93, 205, 277, 646
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 3 cut(s) 253, 373, 705
BssT1I CCWWGG 1 cut(s) 429
Bst4CI ACNGT 3 cut(s) 347, 713, 838
Bst6I CTCTTC 1 cut(s) 358
BstAFI CTTAAG 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 2 cut(s) 564, 734
BstDSI CCRYGG 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 567
BstKTI GATC 3 cut(s) 256, 376, 708
BstMAI GTCTC 2 cut(s) 195, 881
BstMBI GATC 3 cut(s) 253, 373, 705
BstMWI GCNNNNNNNGC 4 cut(s) 616, 649, 815, 937
BstNSI RCATGY 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 720
BstSLI GKGCMC 2 cut(s) 485, 508
BstV1I GCAGC 4 cut(s) 463, 685, 688, 796
BtgI CCRYGG 1 cut(s) 429
BtsIMutI CAGTG 3 cut(s) 60, 653, 834
Cac8I GCNNGC 1 cut(s) 585
CaiI CAGNNNCTG 1 cut(s) 524
Cfr13I GGNCC 2 cut(s) 602, 632
CseI GACGC 1 cut(s) 625
Csp6I GTAC 4 cut(s) 9, 88, 243, 717
CviAII CATG 8 cut(s) 52, 269, 377, 430, 499, 580, 820, 861
CviQI GTAC 4 cut(s) 9, 88, 243, 717
DdeI CTNAG 2 cut(s) 564, 734
DpnI GATC 3 cut(s) 255, 375, 707
DpnII GATC 3 cut(s) 253, 373, 705
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 429
Eco31I GGTCTC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 602, 632
Eco57I CTGAAG 1 cut(s) 789
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 8 cut(s) 55, 272, 380, 433, 502, 583, 823, 864
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 2 cut(s) 333, 618
FatI CATG 8 cut(s) 51, 268, 376, 429, 498, 579, 819, 860
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 5 cut(s) 452, 674, 677, 810, 932
Fsp4HI GCNGC 5 cut(s) 452, 674, 677, 810, 932
FspBI CTAG 1 cut(s) 777
GluI GCNGC 5 cut(s) 452, 674, 677, 810, 932
GsuI CTGGAG 1 cut(s) 76
HgaI GACGC 1 cut(s) 625
Hin1II CATG 8 cut(s) 55, 272, 380, 433, 502, 583, 823, 864
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 2 cut(s) 328, 736
HinfI GANTC 5 cut(s) 107, 133, 338, 362, 419
HpaI GTTAAC 1 cut(s) 535
HphI GGTGA 1 cut(s) 381
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 5 cut(s) 526, 567, 615, 705, 747
Hpy188III TCNNGA 3 cut(s) 98, 137, 876
Hpy8I GTNNAC 1 cut(s) 535
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 4 cut(s) 586, 851, 855, 930
HpyCH4III ACNGT 3 cut(s) 347, 713, 838
HpyCH4V TGCA 6 cut(s) 55, 120, 176, 380, 583, 673
HpyF10VI GCNNNNNNNGC 4 cut(s) 616, 649, 815, 937
HpyF3I CTNAG 2 cut(s) 564, 734
Hsp92II CATG 8 cut(s) 55, 272, 380, 433, 502, 583, 823, 864
Ksp22I TGATCA 1 cut(s) 253
KspAI GTTAAC 1 cut(s) 535
Kzo9I GATC 3 cut(s) 253, 373, 705
LmnI GCTCC 1 cut(s) 706
Lsp1109I GCAGC 4 cut(s) 463, 685, 688, 796
LweI GCATC 2 cut(s) 291, 414
MaeI CTAG 1 cut(s) 777
MaeIII GTNAC 3 cut(s) 124, 145, 493
MalI GATC 3 cut(s) 255, 375, 707
MboI GATC 3 cut(s) 253, 373, 705
MboII GAAGA 5 cut(s) 223, 238, 345, 378, 795
MfeI CAATTG 2 cut(s) 238, 249
MhlI GDGCHC 3 cut(s) 62, 485, 508
MluCI AATT 7 cut(s) 31, 45, 238, 249, 294, 470, 475
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 6 cut(s) 163, 361, 573, 672, 675, 741
MseI TTAA 8 cut(s) 26, 71, 326, 332, 441, 474, 534, 741
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 809
MspCI CTTAAG 1 cut(s) 325
MunI CAATTG 2 cut(s) 238, 249
MwoI GCNNNNNNNGC 4 cut(s) 616, 649, 815, 937
NcoI CCATGG 1 cut(s) 429
NdeII GATC 3 cut(s) 253, 373, 705
NlaIII CATG 8 cut(s) 55, 272, 380, 433, 502, 583, 823, 864
NlaIV GGNNCC 1 cut(s) 634
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 1 cut(s) 55
PfeI GAWTC 4 cut(s) 107, 338, 362, 419
PkrI GCNGC 5 cut(s) 453, 675, 678, 811, 933
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 634
PspPI GGNCC 2 cut(s) 602, 632
PstNI CAGNNNCTG 1 cut(s) 524
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 4 cut(s) 10, 89, 244, 718
RsaNI GTAC 4 cut(s) 9, 88, 243, 717
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 8 cut(s) 26, 71, 326, 332, 441, 474, 534, 741
SatI GCNGC 5 cut(s) 452, 674, 677, 810, 932
Sau3AI GATC 3 cut(s) 253, 373, 705
Sau96I GGNCC 2 cut(s) 602, 632
SchI GAGTC 1 cut(s) 142
SduI GDGCHC 3 cut(s) 62, 485, 508
SfaNI GCATC 2 cut(s) 291, 414
SfcI CTRYAG 1 cut(s) 720
SinI GGWCC 2 cut(s) 602, 632
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 2 cut(s) 325, 874
SmoI CTYRAG 2 cut(s) 325, 874
Sse9I AATT 7 cut(s) 31, 45, 238, 249, 294, 470, 475
SsiI CCGC 2 cut(s) 461, 931
SspMI CTAG 1 cut(s) 777
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 3 cut(s) 347, 713, 838
TaqI TCGA 2 cut(s) 372, 906
TasI AATT 7 cut(s) 31, 45, 238, 249, 294, 470, 475
TatI WGTACW 3 cut(s) 87, 242, 716
TauI GCSGC 1 cut(s) 934
TfiI GAWTC 4 cut(s) 107, 338, 362, 419
Tru1I TTAA 8 cut(s) 26, 71, 326, 332, 441, 474, 534, 741
Tru9I TTAA 8 cut(s) 26, 71, 326, 332, 441, 474, 534, 741
TscAI CASTG 3 cut(s) 67, 653, 841
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 4 cut(s) 451, 673, 676, 809
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 3 cut(s) 207, 245, 849
TspRI CASTG 3 cut(s) 67, 653, 841
Vha464I CTTAAG 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 602, 632
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 1 cut(s) 294
XceI RCATGY 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 645
XspI CTAG 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.