Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004576.1

Orthogroup ID

OG0002977

Physical Location & Seq

Genomic Coordinates Reverse (-)

16494 .. 17198

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004576.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgaaccctaattctgctccaatcgaacagtttcctaatgttgtcccacccattttcatacccccaaaagcaaactcaggcatatctgagttgaacggcctatttgaaacatgcatcaatccccaatcatatgactcttctcttgttgattccttatttgatgcactttcttcaccagatttctcaaatatcaacgattctagccacacgagttttttgaaccagcctttaatagaagaacatatcgggactactaataattttcccactgctgtagtggcctcttttggtttggatgctaaaattgattatattgctaaaggcaagagtctgcctcaaaaagggaagttgttgcaggctctgatggaagccagtccattgcttaagacgcttcttgtcaccgggcctcctctgccccagtggcggaatccttctactatacagaccctagaaatcccactcatatcactcgaaggttgcgaggcaattcttgcaagttttaatgagaaaccagtgacaaaggcatgttcttctaaccatctgaattccatatcctgtcctggattttctcaaatatgttcagctaccatgtggaatttcaacaatgttcctcctgtgatatcatgcaaaagttcgaggccgctaaattcgagttcatattttgatcaacaaatccctgctgccaagcaacgtaggcttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1635

Protein Analysis

234

Amino Acids

25.39

Weight (kDa)

5.59

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28690 AT5G59760
fragaria_vesca	FvH4_3g34910 FvH4_3g34910
malus_domestica	MD03G1100400.v1.1 MD11G1114400.v1.1
prunus_persica	Prupe.6G085300_v2.0.a1
pyrus_communis	pycom03g08250 pycom11g09620
rosa_chinensis	RchiOBHm_Chr1g0380111 RchiOBHm_Chr5g0062781 RchiOBHm_Chr6g0300901
rosa_laevigata	RLG00000011292 RLG00000026330 RLG00000035577
rosa_multiflora	Rmu_sc0001232.1_g000013 Rmu_sc0004576.1_g000006 Rmu_sc0006254.1_g000002 Rmu_ssc0000472.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017840 Rroxscaffold_4G00279670 Rroxscaffold_7G00167330
rosa_rugosa	Rorug01G0417500 Rorug05G0351600
rosa_samantha	Rh1AG442700 Rh1BG397800 Rh1CG411300 Rh1DG428600 Rh5AG412600 Rh5BG426500 Rh5CG450600 Rh5DG440400 Rh6AG412900 Rh6BG420100 Rh6CG427600 Rh6DG412900
rosa_wichuraiana	Rw1G038440 Rw5G038780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	424, 641
AcsI	RAATTY	3 cut(s)	544, 595, 646
AfiI	CCNNNNNNNGG	2 cut(s)	341, 423
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	94, 107, 220, 601, 701
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	1 cut(s)	584
AluI	AGCT	1 cut(s)	584
AlwNI	CAGNNNCTG	1 cut(s)	361
AoxI	GGCC	4 cut(s)	97, 279, 404, 638
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	3 cut(s)	544, 595, 646
Asp700I	GAANNNNTTC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	404
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	165, 391
BauI	CACGAG	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	2 cut(s)	358, 546
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	561
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	403
BfaI	CTAG	2 cut(s)	201, 449
BfmI	CTRYAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	383
BglI	GCCNNNNNGGC	1 cut(s)	421
BisI	GCNGC	2 cut(s)	641, 681
BlsI	GCNGC	2 cut(s)	642, 682
Bme1390I	CCNGG	2 cut(s)	403, 561
BmgT120I	GGNCC	1 cut(s)	404
BmrFI	CCNGG	2 cut(s)	403, 561
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	3 cut(s)	123, 151, 286
BmuI	ACTGGG	1 cut(s)	412
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpuMI	CCSGG	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 423
Bse1I	ACTGG	3 cut(s)	372, 418, 512
Bse3DI	GCAATG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	341, 423
BseMI	GCAATG	1 cut(s)	377
BseMII	CTCAG	2 cut(s)	78, 90
BseNI	ACTGG	3 cut(s)	372, 418, 512
BseRI	GAGGAG	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	667
BshFI	GGCC	4 cut(s)	99, 281, 406, 640
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	2 cut(s)	29, 262
BslI	CCNNNNNNNGG	2 cut(s)	341, 423
BsmFI	GGGAC	2 cut(s)	29, 262
BsnI	GGCC	4 cut(s)	99, 281, 406, 640
Bsp143I	GATC	1 cut(s)	664
BspACI	CCGC	2 cut(s)	424, 641
BspANI	GGCC	4 cut(s)	99, 281, 406, 640
BspCNI	CTCAG	2 cut(s)	79, 89
BspTI	CTTAAG	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	377
BsrI	ACTGG	3 cut(s)	372, 418, 512
BssMI	GATC	1 cut(s)	664
BssSI	CACGAG	1 cut(s)	208
Bst2BI	CACGAG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	142
BstAFI	CTTAAG	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	2 cut(s)	76, 87
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	1 cut(s)	667
BstMBI	GATC	1 cut(s)	664
BstMWI	GCNNNNNNNGC	6 cut(s)	278, 388, 412, 421, 491, 694
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	2 cut(s)	114, 528
BstSCI	CCNGG	2 cut(s)	401, 559
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	667
BsuRI	GGCC	4 cut(s)	99, 281, 406, 640
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	3 cut(s)	267, 425, 519
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	404
CseI	GACGC	1 cut(s)	397
CviAII	CATG	4 cut(s)	111, 525, 589, 624
DdeI	CTNAG	2 cut(s)	76, 87
DpnI	GATC	1 cut(s)	666
DpnII	GATC	1 cut(s)	664
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
EciI	GGCGGA	1 cut(s)	439
Eco32I	GATATC	1 cut(s)	621
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	559
EcoRV	GATATC	1 cut(s)	621
EcoT22I	ATGCAT	1 cut(s)	116
FaeI	CATG	4 cut(s)	114, 528, 592, 627
FaqI	GGGAC	2 cut(s)	29, 262
FatI	CATG	4 cut(s)	110, 524, 588, 623
FauNDI	CATATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	2 cut(s)	641, 681
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	2 cut(s)	641, 681
FspBI	CTAG	2 cut(s)	201, 449
GluI	GCNGC	2 cut(s)	641, 681
HaeIII	GGCC	4 cut(s)	99, 281, 406, 640
HapII	CCGG	1 cut(s)	402
HgaI	GACGC	1 cut(s)	397
Hin1II	CATG	4 cut(s)	114, 528, 592, 627
HinfI	GANTC	5 cut(s)	134, 149, 197, 328, 427
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	2 cut(s)	165, 391
Hpy188I	TCNGA	3 cut(s)	88, 363, 543
Hpy188III	TCNNGA	1 cut(s)	247
HpyAV	CCTTC	2 cut(s)	441, 467
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	5 cut(s)	114, 164, 355, 494, 627
HpyF10VI	GCNNNNNNNGC	6 cut(s)	278, 388, 412, 421, 491, 694
HpyF3I	CTNAG	2 cut(s)	76, 87
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	4 cut(s)	114, 528, 592, 627
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	1 cut(s)	664
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	3 cut(s)	123, 151, 286
MaeI	CTAG	2 cut(s)	201, 449
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	2 cut(s)	397, 514
MalI	GATC	1 cut(s)	666
MboI	GATC	1 cut(s)	664
MboII	GAAGA	4 cut(s)	129, 162, 248, 522
MluCI	AATT	7 cut(s)	10, 259, 303, 486, 544, 595, 646
MlyI	GAGTC	2 cut(s)	128, 337
MnlI	CCTC	7 cut(s)	292, 345, 417, 420, 475, 621, 630
Mph1103I	ATGCAT	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	3 cut(s)	230, 384, 501
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	403, 561
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	6 cut(s)	278, 388, 412, 421, 491, 694
NciI	CCSGG	1 cut(s)	403
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	1 cut(s)	664
NlaIII	CATG	4 cut(s)	114, 528, 592, 627
NmuCI	GTSAC	2 cut(s)	397, 514
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	2 cut(s)	114, 528
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	149, 197, 427
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	2 cut(s)	642, 682
PleI	GAGTC	2 cut(s)	128, 336
PpsI	GAGTC	2 cut(s)	128, 336
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	404
PstNI	CAGNNNCTG	1 cut(s)	361
SaqAI	TTAA	3 cut(s)	230, 384, 501
SatI	GCNGC	2 cut(s)	641, 681
Sau3AI	GATC	1 cut(s)	664
Sau96I	GGNCC	1 cut(s)	404
SchI	GAGTC	2 cut(s)	128, 337
ScrFI	CCNGG	2 cut(s)	403, 561
SetI	ASST	3 cut(s)	478, 586, 694
SfaNI	GCATC	3 cut(s)	123, 151, 286
SfcI	CTRYAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	7 cut(s)	10, 259, 303, 486, 544, 595, 646
SsiI	CCGC	2 cut(s)	424, 641
SspMI	CTAG	2 cut(s)	201, 449
StyD4I	CCNGG	2 cut(s)	401, 559
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	4 cut(s)	24, 471, 635, 650
TasI	AATT	7 cut(s)	10, 259, 303, 486, 544, 595, 646
TauI	GCSGC	1 cut(s)	643
TfiI	GAWTC	3 cut(s)	149, 197, 427
Tru1I	TTAA	3 cut(s)	230, 384, 501
Tru9I	TTAA	3 cut(s)	230, 384, 501
TscAI	CASTG	3 cut(s)	274, 425, 519
TseFI	GTSAC	2 cut(s)	397, 514
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	2 cut(s)	397, 514
TspDTI	ATGAA	3 cut(s)	17, 46, 645
TspRI	CASTG	3 cut(s)	274, 425, 519
Vha464I	CTTAAG	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	3 cut(s)	544, 595, 646
XceI	RCATGY	2 cut(s)	114, 528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	2 cut(s)	201, 449
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.