Rroxscaffold_1G00017840

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002977
Physical Location & Seq
Forward (+)
21888173 .. 21890246
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017840.1

Sequence Viewer

Length: 1053 bp
ATGGAGGACATGGGTTCTATATGGACTACCTATCAAGAGGAATTTTATGTTTCTTCCAATTTTATTAGAAGCCCTTTGTCTGAAACTGACCAATTACCTGTTCTAAATCCACAGAGTACTGATGATTTGAACAAGAAGCTTCTTTACACTACCCTTGAGCTTGAAACAATGAAGAATTTAGCAACAGAGAGTCAAGAGAATGTGCAGAATCTACTCAATCTACTAAAGGTTGCATACAAAGAAAGAGATGAAGCCAGAGACCAGCTGCACAAGTTCTTCAACAAGATCACTGCTTCTACTCCAATTGACTTACCCAATATGCAGTTTAATCAAGTAGTCCAGCCCGAAAGTCCGACTTTGATGCCCACAAAAGCACACTCGAGCATTACTGAATCCAACAGCCTCTCTGAAACTTACAATCCCCAATCACATATCTCTTCTCCTGTTGATTCATTGTTTGATGCAGTCTCTTCTCCTGAGTTTTCCAATATCAAGATGGCTGATTCTAGCAACAACGTGGGTTTTGTGAAGCAGCCTTTGGTGAAAGAATTTAATGGAAGTACTATTATACCTACTGGTGTAGTAGTCTTTTCTGGTTCAAGTATCAAAGCTGATCCAGCTAATGAAATAATTGACAATTTTGTTAGGGGTAGGCCTTTGCCTCAGAAAGGGATGTTATTGCAAGCTGTGATGGATGCTGGTCCATTGCTTCAGACACTTCTCGTTGCAGGTCCTATGCCCCGGTGGCGAAATCCCCCTCCTTTGCAGCCCTTCAAAATCCCACAAGTTTCAATCAAAGGTTATGAAGCTGCTGTGAGTTTTAACAACCAGAAACCAGTGGCAAGTCCTACCTATGTGGTTCATAAGACACAGAACGTAACATCTTATCCTGAGATGACTCGAGGCTTTTCTCAAACATGTTCAGCTGCCATGTTGAATTTCAACAATGTCAATCCTAATGCTGTTTCATACCTAAACAATTCAAGAATGCCGAGTTCAATTTCCAGTTTTGATCACCAAATCCCAATTGCCAAGCGGCATAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

350

Amino Acids

38.98

Weight (kDa)

6.1

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 38 - 281 6.9e-44 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 719
AciI CCGC 1 cut(s) 1036
AclWI GGATC 1 cut(s) 608
AcsI RAATTY 4 cut(s) 41, 175, 548, 937
AcuI CTGAAG 1 cut(s) 695
AfaI GTAC 2 cut(s) 118, 562
AfiI CCNNNNNNNGG 1 cut(s) 668
AflIII ACRYGT 1 cut(s) 917
AjuI GAANNNNNNNTTGG 4 cut(s) 84, 116, 521, 553
AluBI AGCT 8 cut(s) 139, 160, 265, 611, 620, 686, 809, 926
AluI AGCT 8 cut(s) 139, 160, 265, 611, 620, 686, 809, 926
Alw26I GTCTC 2 cut(s) 252, 472
AlwI GGATC 1 cut(s) 608
Ama87I CYCGRG 2 cut(s) 379, 900
AoxI GGCC 1 cut(s) 653
ApeKI GCWGC 5 cut(s) 265, 532, 766, 809, 926
ApoI RAATTY 4 cut(s) 41, 175, 548, 937
AspS9I GGNCC 2 cut(s) 701, 731
AsuC2I CCSGG 1 cut(s) 742
AsuHPI GGTGA 2 cut(s) 553, 1007
AvaI CYCGRG 2 cut(s) 379, 900
AvaII GGWCC 2 cut(s) 701, 731
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbvI GCAGC 5 cut(s) 252, 544, 778, 796, 913
BccI CCATC 2 cut(s) 490, 685
BcgI CGANNNNNNTGC 2 cut(s) 343, 377
BclI TGATCA 1 cut(s) 1012
BcnI CCSGG 1 cut(s) 742
BcoDI GTCTC 2 cut(s) 252, 472
BfaI CTAG 1 cut(s) 507
BfuAI ACCTGC 1 cut(s) 719
BglI GCCNNNNNGGC 1 cut(s) 745
BisI GCNGC 6 cut(s) 266, 533, 767, 810, 927, 1037
BlsI GCNGC 6 cut(s) 267, 534, 768, 811, 928, 1038
BmcAI AGTACT 2 cut(s) 118, 562
Bme1390I CCNGG 1 cut(s) 742
Bme18I GGWCC 2 cut(s) 701, 731
BmeT110I CYCGRG 2 cut(s) 379, 900
BmgT120I GGNCC 2 cut(s) 701, 731
BmrFI CCNGG 1 cut(s) 742
BmsI GCATC 3 cut(s) 351, 451, 685
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 742
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 740
Bsc4I CCNNNNNNNGG 1 cut(s) 668
Bse1I ACTGG 3 cut(s) 580, 836, 1005
Bse3DI GCAATG 1 cut(s) 704
BseDI CCNNGG 1 cut(s) 740
BseGI GGATG 2 cut(s) 678, 700
BseLI CCNNNNNNNGG 1 cut(s) 668
BseMI GCAATG 1 cut(s) 704
BseMII CTCAG 3 cut(s) 468, 677, 882
BseNI ACTGG 3 cut(s) 580, 836, 1005
BseXI GCAGC 5 cut(s) 252, 544, 778, 796, 913
BsgI GTGCAG 2 cut(s) 224, 251
BshFI GGCC 1 cut(s) 655
BsiHKCI CYCGRG 2 cut(s) 379, 900
BsiSI CCGG 1 cut(s) 742
BslI CCNNNNNNNGG 1 cut(s) 668
BsmAI GTCTC 2 cut(s) 252, 472
BsmI GAATGC 1 cut(s) 993
BsnI GGCC 1 cut(s) 655
Bso31I GGTCTC 1 cut(s) 252
BsoBI CYCGRG 2 cut(s) 379, 900
Bsp143I GATC 3 cut(s) 285, 613, 1012
BspACI CCGC 1 cut(s) 1036
BspANI GGCC 1 cut(s) 655
BspCNI CTCAG 3 cut(s) 469, 676, 883
BspMI ACCTGC 1 cut(s) 719
BspPI GGATC 1 cut(s) 608
BspTNI GGTCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 704
BsrI ACTGG 3 cut(s) 580, 836, 1005
BssECI CCNNGG 1 cut(s) 740
BssMI GATC 3 cut(s) 285, 613, 1012
Bst6I CTCTTC 2 cut(s) 442, 475
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 3 cut(s) 477, 663, 891
BstENI CCTNNNNNAGG 1 cut(s) 666
BstF5I GGATG 2 cut(s) 678, 700
BstKTI GATC 3 cut(s) 288, 616, 1015
BstMAI GTCTC 2 cut(s) 252, 472
BstMBI GATC 3 cut(s) 285, 613, 1012
BstMWI GCNNNNNNNGC 3 cut(s) 617, 745, 1042
BstNSI RCATGY 1 cut(s) 921
BstSCI CCNGG 1 cut(s) 740
BstV1I GCAGC 5 cut(s) 252, 544, 778, 796, 913
BsuRI GGCC 1 cut(s) 655
BtsCI GGATG 2 cut(s) 678, 700
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 288, 843
BveI ACCTGC 1 cut(s) 719
Cac8I GCNNGC 1 cut(s) 684
Cfr13I GGNCC 2 cut(s) 701, 731
Csp6I GTAC 2 cut(s) 117, 561
CviAII CATG 3 cut(s) 10, 918, 931
CviQI GTAC 2 cut(s) 117, 561
DdeI CTNAG 3 cut(s) 477, 663, 891
DpnI GATC 3 cut(s) 287, 615, 1014
DpnII GATC 3 cut(s) 285, 613, 1012
Eam1104I CTCTTC 2 cut(s) 442, 475
EarI CTCTTC 2 cut(s) 442, 475
Eco147I AGGCCT 1 cut(s) 655
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 701, 731
Eco57I CTGAAG 1 cut(s) 695
Eco88I CYCGRG 2 cut(s) 379, 900
EcoNI CCTNNNNNAGG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 731
FaeI CATG 3 cut(s) 13, 921, 934
FalI AAGNNNNNCTT 2 cut(s) 340, 372
FatI CATG 3 cut(s) 9, 917, 930
FbaI TGATCA 1 cut(s) 1012
Fnu4HI GCNGC 6 cut(s) 266, 533, 767, 810, 927, 1037
FokI GGATG 2 cut(s) 685, 707
Fsp4HI GCNGC 6 cut(s) 266, 533, 767, 810, 927, 1037
FspBI CTAG 1 cut(s) 507
GluI GCNGC 6 cut(s) 266, 533, 767, 810, 927, 1037
HaeIII GGCC 1 cut(s) 655
HapII CCGG 1 cut(s) 742
Hin1II CATG 3 cut(s) 13, 921, 934
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 6 cut(s) 190, 208, 392, 449, 503, 898
HpaII CCGG 1 cut(s) 742
HphI GGTGA 2 cut(s) 553, 1007
Hpy188I TCNGA 5 cut(s) 82, 354, 409, 666, 714
Hpy188III TCNNGA 6 cut(s) 35, 194, 476, 493, 890, 984
HpyAV CCTTC 1 cut(s) 781
HpyCH4IV ACGT 2 cut(s) 516, 876
HpyCH4V TGCA 8 cut(s) 205, 233, 268, 322, 464, 682, 728, 766
HpyF10VI GCNNNNNNNGC 3 cut(s) 617, 745, 1042
HpyF3I CTNAG 3 cut(s) 477, 663, 891
HpySE526I ACGT 2 cut(s) 516, 876
Hsp92II CATG 3 cut(s) 13, 921, 934
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 3 cut(s) 285, 613, 1012
Lsp1109I GCAGC 5 cut(s) 252, 544, 778, 796, 913
LweI GCATC 3 cut(s) 351, 451, 685
MaeI CTAG 1 cut(s) 507
MaeII ACGT 2 cut(s) 516, 876
MaeIII GTNAC 1 cut(s) 877
MalI GATC 3 cut(s) 287, 615, 1014
MboI GATC 3 cut(s) 285, 613, 1012
MboII GAAGA 5 cut(s) 45, 184, 268, 429, 462
MfeI CAATTG 2 cut(s) 303, 1026
MlyI GAGTC 2 cut(s) 199, 892
MmeI TCCRAC 2 cut(s) 377, 420
MnlI CCTC 5 cut(s) 31, 413, 672, 768, 896
MseI TTAA 3 cut(s) 327, 552, 822
MspA1I CMGCKG 2 cut(s) 265, 926
MspI CCGG 1 cut(s) 742
MspR9I CCNGG 1 cut(s) 742
MunI CAATTG 2 cut(s) 303, 1026
Mva1269I GAATGC 1 cut(s) 993
MwoI GCNNNNNNNGC 3 cut(s) 617, 745, 1042
NciI CCSGG 1 cut(s) 742
NdeII GATC 3 cut(s) 285, 613, 1012
NlaIII CATG 3 cut(s) 13, 921, 934
NmeAIII GCCGAG 1 cut(s) 1017
NspI RCATGY 1 cut(s) 921
PaeR7I CTCGAG 2 cut(s) 379, 900
PceI AGGCCT 1 cut(s) 655
PciI ACATGT 1 cut(s) 917
PctI GAATGC 1 cut(s) 993
PfeI GAWTC 4 cut(s) 208, 392, 449, 503
PkrI GCNGC 6 cut(s) 267, 534, 768, 811, 928, 1038
PleI GAGTC 2 cut(s) 198, 892
PpsI GAGTC 2 cut(s) 198, 892
PpuMI RGGWCCY 1 cut(s) 731
PscI ACATGT 1 cut(s) 917
Psp5II RGGWCCY 1 cut(s) 731
PspPI GGNCC 2 cut(s) 701, 731
PspPPI RGGWCCY 1 cut(s) 731
PspXI VCTCGAGB 2 cut(s) 379, 900
PvuII CAGCTG 2 cut(s) 265, 926
RsaI GTAC 2 cut(s) 118, 562
RsaNI GTAC 2 cut(s) 117, 561
SaqAI TTAA 3 cut(s) 327, 552, 822
SatI GCNGC 6 cut(s) 266, 533, 767, 810, 927, 1037
Sau3AI GATC 3 cut(s) 285, 613, 1012
Sau96I GGNCC 2 cut(s) 701, 731
ScaI AGTACT 2 cut(s) 118, 562
SchI GAGTC 2 cut(s) 199, 892
ScrFI CCNGG 1 cut(s) 742
SfaNI GCATC 3 cut(s) 351, 451, 685
Sfr274I CTCGAG 2 cut(s) 379, 900
SinI GGWCC 2 cut(s) 701, 731
SlaI CTCGAG 2 cut(s) 379, 900
SmlI CTYRAG 3 cut(s) 155, 379, 900
SmoI CTYRAG 3 cut(s) 155, 379, 900
SseBI AGGCCT 1 cut(s) 655
SsiI CCGC 1 cut(s) 1036
SspMI CTAG 1 cut(s) 507
StuI AGGCCT 1 cut(s) 655
StyD4I CCNGG 1 cut(s) 740
TaiI ACGT 2 cut(s) 519, 879
TaqI TCGA 2 cut(s) 380, 901
TatI WGTACW 2 cut(s) 116, 560
TauI GCSGC 1 cut(s) 1039
TfiI GAWTC 4 cut(s) 208, 392, 449, 503
Tru1I TTAA 3 cut(s) 327, 552, 822
Tru9I TTAA 3 cut(s) 327, 552, 822
TscAI CASTG 2 cut(s) 295, 843
TseI GCWGC 5 cut(s) 265, 532, 766, 809, 926
TspDTI ATGAA 7 cut(s) 185, 264, 441, 639, 819, 851, 957
TspRI CASTG 2 cut(s) 295, 843
VpaK11BI GGWCC 2 cut(s) 701, 731
XagI CCTNNNNNAGG 1 cut(s) 666
XapI RAATTY 4 cut(s) 41, 175, 548, 937
XceI RCATGY 1 cut(s) 921
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XhoI CTCGAG 2 cut(s) 379, 900
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 2 cut(s) 118, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.