Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Reverse (-)

12640800 .. 12642387

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCTTCTCCTATTCCCGTCGGCGTTACTAAGGAACAGGCGTTTAGTATGGCACAAACGGAGATGGAGTATCGCGTGGAACTCTTTAACAAGCTTGCTCAAACATGCTTTAATAAATGTGTGGATAAAAGGTACAAGGAAGCTGAGCTAAACATGGGTGAGAATAGTTGCATCGACCGTTGTGTTTCCAAGTACTGGCAGGTAAATGGAATGGTTGGACAGCTTCTAAGTGCTGGCAAGCCTCCCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

83

Amino Acids

9.34

Weight (kDa)

7.62

Isoelectric Point (pI)

23.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	45 - 100	3.1e-16	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccII	CGCG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	134, 194
AfiI	CCNNNNNNNGG	1 cut(s)	195
AluBI	AGCT	4 cut(s)	94, 143, 148, 223
AluI	AGCT	4 cut(s)	94, 143, 148, 223
AsuHPI	GGTGA	1 cut(s)	170
BccI	CCATC	1 cut(s)	58
BfuAI	ACCTGC	1 cut(s)	190
BlpI	GCTNAGC	1 cut(s)	144
BmcAI	AGTACT	1 cut(s)	194
BmsI	GCATC	1 cut(s)	180
Bpu1102I	GCTNAGC	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	195
Bsp1720I	GCTNAGC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	179
BstC8I	GCNNGC	3 cut(s)	96, 235, 239
BstDEI	CTNAG	3 cut(s)	30, 144, 227
BstFNI	CGCG	1 cut(s)	75
BstMCI	CGRYCG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	108
BstUI	CGCG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	96, 235, 239
Csp6I	GTAC	2 cut(s)	133, 193
CviAII	CATG	2 cut(s)	105, 154
CviJI	RGCY	6 cut(s)	5, 94, 143, 148, 223, 241
CviKI_1	RGCY	6 cut(s)	5, 94, 143, 148, 223, 241
CviQI	GTAC	2 cut(s)	133, 193
DdeI	CTNAG	3 cut(s)	30, 144, 227
FaeI	CATG	2 cut(s)	108, 157
FaiI	YATR	3 cut(s)	50, 106, 155
FatI	CATG	2 cut(s)	104, 153
Hin1II	CATG	2 cut(s)	108, 157
HindIII	AAGCTT	1 cut(s)	92
HphI	GGTGA	1 cut(s)	170
Hpy99I	CGWCG	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	1 cut(s)	171
HpyF3I	CTNAG	3 cut(s)	30, 144, 227
Hsp92II	CATG	2 cut(s)	108, 157
LpnPI	CCDG	4 cut(s)	23, 181, 185, 219
LweI	GCATC	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	87, 111
MvnI	CGCG	1 cut(s)	75
NlaIII	CATG	2 cut(s)	108, 157
NspI	RCATGY	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	195
RsaI	GTAC	2 cut(s)	134, 194
RsaNI	GTAC	2 cut(s)	133, 193
SaqAI	TTAA	2 cut(s)	87, 111
ScaI	AGTACT	1 cut(s)	194
SetI	ASST	6 cut(s)	96, 134, 145, 150, 204, 225
SfaNI	GCATC	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	174
TatI	WGTACW	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	87, 111
Tru9I	TTAA	2 cut(s)	87, 111
TspGWI	ACGGA	1 cut(s)	74
Van91I	CCANNNNNTGG	1 cut(s)	195
XceI	RCATGY	1 cut(s)	108
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.