Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Reverse (-)

32122901 .. 32126049

Gene Structure 3149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCTGCTCCAGCGGGTATGGACAAGGAACAGATTTTTGGTATGGCTGAGAAGGAGATGGAGTACAGGGTTGAGTTGTTTAACAAGCTCACTCACACATGCTTCAACAAGTGTGTAGAGAAGAAGTACAAGGAGGGTGAGCTAAATATGGGTGAAAACAGTTGCATTGATCGCTGTGTCTCAAAGTACTGGCAGGTGACTAATCTAGTTGGCCAGCTGCTTGGGGCCGGTAAGCCAGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

82

Amino Acids

9.17

Weight (kDa)

6.56

Isoelectric Point (pI)

10.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	14 - 74	1.1e-22	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	184
AciI	CCGC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	211
AfaI	GTAC	3 cut(s)	65, 128, 188
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AluBI	AGCT	3 cut(s)	88, 142, 217
AluI	AGCT	3 cut(s)	88, 142, 217
Alw26I	GTCTC	1 cut(s)	184
AoxI	GGCC	2 cut(s)	211, 225
ApeKI	GCWGC	2 cut(s)	5, 217
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	3 cut(s)	149, 164, 208
BalI	TGGCCA	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	6, 218
BlsI	GCNGC	2 cut(s)	7, 219
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	204
BshFI	GGCC	2 cut(s)	213, 227
BsiSI	CCGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	213, 227
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	213, 227
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 171
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	213, 227
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	3 cut(s)	64, 127, 187
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	8 cut(s)	5, 47, 88, 142, 213, 217, 227, 235
CviKI_1	RGCY	8 cut(s)	5, 47, 88, 142, 213, 217, 227, 235
CviQI	GTAC	3 cut(s)	64, 127, 187
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	235
FaeI	CATG	1 cut(s)	102
FaiI	YATR	4 cut(s)	20, 44, 100, 149
FatI	CATG	1 cut(s)	98
FauI	CCCGC	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	6, 218
Fsp4HI	GCNGC	2 cut(s)	6, 218
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	2 cut(s)	6, 218
HaeIII	GGCC	2 cut(s)	213, 227
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	1 cut(s)	102
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	3 cut(s)	149, 164, 208
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 171
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	7 cut(s)	24, 52, 175, 179, 222, 227, 241
Lsp1109I	GCAGC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	133
MlsI	TGGCCA	1 cut(s)	213
MluNI	TGGCCA	1 cut(s)	213
MnlI	CCTC	1 cut(s)	127
Mox20I	TGGCCA	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	213
MspA1I	CMGCKG	2 cut(s)	14, 217
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	11, 171
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	102
PaqCI	CACCTGC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	7, 219
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	3 cut(s)	65, 128, 188
RsaNI	GTAC	3 cut(s)	64, 127, 187
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	6, 218
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	225
ScaI	AGTACT	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	4 cut(s)	90, 144, 198, 219
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	161
TatI	WGTACW	3 cut(s)	63, 126, 186
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	5, 217
Tsp45I	GTSAC	1 cut(s)	196
XceI	RCATGY	1 cut(s)	102
XspI	CTAG	1 cut(s)	206
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.