Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Forward (+)

16944864 .. 16950394

Gene Structure 5531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00013750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATGTTGGCTGTTGTTGAAGCTGCGCAGAGTCACGGGCATTCGGTGAGTGACGTGTCTGTTTCGGATGAGTCCACGTTTGATTCTTGTGGGTCGGACTGTTGTTCTTTGGAGGGTGTGGATTTGGAGAGTGGGGTTTTGGAGTTGAAGAAGAATAAGGTGGTGCTGCATTTGAGTAAGGTTGAGAGAATTTGCAGAATTTGCCACTTGGGTTTTGAGGGTGGTGGGTTGGACTCTTCTGGGCTTCCAATTGACTTGGGATGTTCTTGCAAAGGTGATTTGGGTGCTGCTCATAAGCAGTGTGCTGAGACTTGGTTCAAGATCAAGGGTGATACAATCTGCGAGATCTGTGGTGTCGTTGCATTTAACATAGTTGGTGAGCAGATCAACGAGGCAAATGGAGCCATCGCCCCAACATCCCCTTCAACACCACCAGCAGCATCTGGTCCAATGGCTGCTAACAATGTTCCAGTGGGTTTGGACAAGGAACAGATTTTTGGTATGGCAGAGAAGGAGATGGAGTACAGGGTTGAGTTATTTAACAAGTACAAGGAGTCTGAGCTAAATATGGGTGAAAACAGTTGCATTGATCGTTGTGTCTCAAAGTACTGGCAGGTGACTAATCTAGTTGGTCAGCTGCTTGGTGCCGGTAGGCCTCCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

221

Amino Acids

23.52

Weight (kDa)

4.82

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	65 - 117	4.2e-11	RING-variant domain
zf-Tim10_DDP	PF02953	181 - 214	2.7e-09	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	604
Acc16I	TGCGCA	1 cut(s)	27
Acc36I	ACCTGC	1 cut(s)	604
AccB1I	GGYRCC	1 cut(s)	644
AcsI	RAATTY	2 cut(s)	189, 198
AfaI	GTAC	3 cut(s)	524, 548, 608
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	4 cut(s)	20, 148, 319, 426
AjiI	CACGTC	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	4 cut(s)	406, 438, 480, 512
AluBI	AGCT	3 cut(s)	23, 562, 637
AluI	AGCT	3 cut(s)	23, 562, 637
Alw26I	GTCTC	2 cut(s)	302, 604
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	653
ApeKI	GCWGC	6 cut(s)	23, 166, 287, 437, 455, 637
ApoI	RAATTY	2 cut(s)	189, 198
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	6 cut(s)	58, 287, 341, 389, 584, 628
AvaII	GGWCC	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	644
BbvI	GCAGC	6 cut(s)	10, 153, 274, 442, 449, 624
BccI	CCATC	2 cut(s)	413, 511
BcoDI	GTCTC	2 cut(s)	302, 604
BfaI	CTAG	1 cut(s)	626
BfuAI	ACCTGC	1 cut(s)	604
BglII	AGATCT	1 cut(s)	345
BisI	GCNGC	6 cut(s)	24, 167, 288, 438, 456, 638
BlsI	GCNGC	6 cut(s)	25, 168, 289, 439, 457, 639
BmcAI	AGTACT	1 cut(s)	608
Bme18I	GGWCC	1 cut(s)	446
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	403, 646
BmsI	GCATC	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	2 cut(s)	470, 614
BseGI	GGATG	3 cut(s)	73, 266, 416
BseMII	CTCAG	2 cut(s)	297, 549
BseNI	ACTGG	2 cut(s)	470, 614
BseXI	GCAGC	6 cut(s)	10, 153, 274, 442, 449, 624
BshFI	GGCC	1 cut(s)	655
BshNI	GGYRCC	1 cut(s)	644
BsiSI	CCGG	1 cut(s)	648
BsmAI	GTCTC	2 cut(s)	302, 604
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	655
Bsp143I	GATC	4 cut(s)	321, 345, 384, 589
BspANI	GGCC	1 cut(s)	655
BspCNI	CTCAG	2 cut(s)	298, 550
BspLI	GGNNCC	2 cut(s)	403, 646
BspMI	ACCTGC	1 cut(s)	604
BspT107I	GGYRCC	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	2 cut(s)	470, 614
BssAI	RCCGGY	1 cut(s)	647
BssMI	GATC	4 cut(s)	321, 345, 384, 589
Bst4CI	ACNGT	2 cut(s)	101, 581
Bst6I	CTCTTC	1 cut(s)	241
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	306, 558
BstF5I	GGATG	3 cut(s)	73, 266, 416
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	4 cut(s)	324, 348, 387, 592
BstMAI	GTCTC	2 cut(s)	302, 604
BstMBI	GATC	4 cut(s)	321, 345, 384, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 401
BstV1I	GCAGC	6 cut(s)	10, 153, 274, 442, 449, 624
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	655
BtgZI	GCGATG	1 cut(s)	391
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	3 cut(s)	73, 266, 416
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	305, 477
BveI	ACCTGC	1 cut(s)	604
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	446
Csp6I	GTAC	3 cut(s)	523, 547, 607
CviJI	RGCY	8 cut(s)	11, 23, 244, 404, 455, 562, 637, 655
CviKI_1	RGCY	8 cut(s)	11, 23, 244, 404, 455, 562, 637, 655
CviQI	GTAC	3 cut(s)	523, 547, 607
DdeI	CTNAG	2 cut(s)	306, 558
DpnI	GATC	4 cut(s)	323, 347, 386, 591
DpnII	GATC	4 cut(s)	321, 345, 384, 589
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco147I	AGGCCT	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	446
FaiI	YATR	5 cut(s)	294, 371, 503, 569, 662
Fnu4HI	GCNGC	6 cut(s)	24, 167, 288, 438, 456, 638
FokI	GGATG	3 cut(s)	80, 273, 403
Fsp4HI	GCNGC	6 cut(s)	24, 167, 288, 438, 456, 638
FspBI	CTAG	1 cut(s)	626
FspI	TGCGCA	1 cut(s)	27
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	6 cut(s)	24, 167, 288, 438, 456, 638
HaeIII	GGCC	1 cut(s)	655
HapII	CCGG	1 cut(s)	648
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	5 cut(s)	31, 71, 83, 233, 554
HpaII	CCGG	1 cut(s)	648
HphI	GGTGA	6 cut(s)	58, 287, 341, 389, 584, 628
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	3 cut(s)	67, 97, 559
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	432, 505
HpyCH4III	ACNGT	2 cut(s)	101, 581
HpyCH4IV	ACGT	2 cut(s)	54, 77
HpyCH4V	TGCA	5 cut(s)	169, 195, 270, 362, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 401
HpyF3I	CTNAG	2 cut(s)	306, 558
HpySE526I	ACGT	2 cut(s)	54, 77
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	4 cut(s)	321, 345, 384, 589
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	8 cut(s)	225, 429, 447, 483, 511, 595, 599, 661
Lsp1109I	GCAGC	6 cut(s)	10, 153, 274, 442, 449, 624
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	2 cut(s)	54, 77
MaeIII	GTNAC	3 cut(s)	32, 50, 616
MalI	GATC	4 cut(s)	323, 347, 386, 591
MboI	GATC	4 cut(s)	321, 345, 384, 589
MboII	GAAGA	3 cut(s)	160, 163, 228
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	1 cut(s)	345
MluCI	AATT	3 cut(s)	189, 198, 249
MlyI	GAGTC	4 cut(s)	40, 80, 227, 563
MmeI	TCCRAC	2 cut(s)	75, 210
MnlI	CCTC	4 cut(s)	106, 211, 385, 666
MseI	TTAA	2 cut(s)	366, 540
MspA1I	CMGCKG	1 cut(s)	637
MspI	CCGG	1 cut(s)	648
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	201, 401
NdeII	GATC	4 cut(s)	321, 345, 384, 589
NlaIV	GGNNCC	2 cut(s)	403, 646
NmuCI	GTSAC	3 cut(s)	32, 50, 616
NsbI	TGCGCA	1 cut(s)	27
PaqCI	CACCTGC	1 cut(s)	604
PceI	AGGCCT	1 cut(s)	655
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	6 cut(s)	25, 168, 289, 439, 457, 639
PleI	GAGTC	4 cut(s)	39, 79, 227, 562
PpsI	GAGTC	4 cut(s)	39, 79, 227, 562
PspN4I	GGNNCC	2 cut(s)	403, 646
PspPI	GGNCC	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	345
PvuII	CAGCTG	1 cut(s)	637
RsaI	GTAC	3 cut(s)	524, 548, 608
RsaNI	GTAC	3 cut(s)	523, 547, 607
SaqAI	TTAA	2 cut(s)	366, 540
SatI	GCNGC	6 cut(s)	24, 167, 288, 438, 456, 638
Sau3AI	GATC	4 cut(s)	321, 345, 384, 589
Sau96I	GGNCC	1 cut(s)	446
ScaI	AGTACT	1 cut(s)	608
SchI	GAGTC	4 cut(s)	40, 80, 227, 563
SetI	ASST	9 cut(s)	25, 57, 80, 162, 183, 277, 564, 618, 639
SfaNI	GCATC	1 cut(s)	449
SinI	GGWCC	1 cut(s)	446
Sse9I	AATT	3 cut(s)	189, 198, 249
SseBI	AGGCCT	1 cut(s)	655
SspMI	CTAG	1 cut(s)	626
StuI	AGGCCT	1 cut(s)	655
TaaI	ACNGT	2 cut(s)	101, 581
TaiI	ACGT	2 cut(s)	57, 80
TasI	AATT	3 cut(s)	189, 198, 249
TatI	WGTACW	3 cut(s)	522, 546, 606
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	366, 540
Tru9I	TTAA	2 cut(s)	366, 540
TscAI	CASTG	2 cut(s)	305, 477
TseFI	GTSAC	3 cut(s)	32, 50, 616
TseI	GCWGC	6 cut(s)	23, 166, 287, 437, 455, 637
Tsp45I	GTSAC	3 cut(s)	32, 50, 616
TspRI	CASTG	2 cut(s)	305, 477
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	2 cut(s)	189, 198
XspI	CTAG	1 cut(s)	626
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.