Rh5DG475700

Mitochondrial import inner membrane translocase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002651
Physical Location & Seq
Reverse (-)
75180381 .. 75182668
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG475700.1

Sequence Viewer

Length: 579 bp
ATGGCTGCTAACAATGTTCCAGTGGGTTTGGACAAGGAACAGATTTTTGGTATGGCAGAGAAGGAGATGGAGTACAGGGTTGAGTTATTTAACAAGCTTACCCACACATGCTTCAACAAGTGTGTTGAGAAGAAGTACAAGGAGTCTGAGCTAAATATGGGTGAAAACAGTTGCATTGATCGTTGTGTCTCAAAGTACTGGCAGGTAAGCTATCGAGGTGTTTTCTTATGGATTATTGGGTTAAGTTACAGCAAATTCGTACTTGCCCTTCAAGTATTTATATTTCTTCTTTCATTCCTTATATTGGAATTTATCTTCAAACATTTGTTATCATCAAGTTGCAAGATTCTTGGGATCGCCATTTATTGTCATAGTAAAGTGTTTTTAAGCGTAACTGTTTTTTTTGGTTATAATGAAGTGATTCTTCTGGTTGACAATTCAGCCGCAAAAGAAAGTAATAAGCCCCCTGCATATATTAACTTCATACACTTCACACTTTTTGCTGCTGCATCTATACTTATGCACAAATCTAAGCTTCTTTTGTGTCTAAATGAAAAACTATTGTTTGCAGGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Tim10_DDP

Protein Analysis

192

Amino Acids

22.0

Weight (kDa)

8.41

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Tim10_DDP PF02953 17 - 71 2.4e-19 Tim10/DDP family zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 2 cut(s) 193, 560
AciI CCGC 1 cut(s) 444
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 2 cut(s) 254, 308
AfaI GTAC 4 cut(s) 74, 137, 197, 261
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 3 cut(s) 115, 272, 319
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 4 cut(s) 97, 151, 210, 535
AluI AGCT 4 cut(s) 97, 151, 210, 535
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 1 cut(s) 362
ApeKI GCWGC 3 cut(s) 5, 503, 506
ApoI RAATTY 2 cut(s) 254, 308
Asp700I GAANNNNTTC 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 173
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BbvI GCAGC 2 cut(s) 490, 493
BccI CCATC 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 193
BfuAI ACCTGC 2 cut(s) 193, 560
BisI GCNGC 4 cut(s) 6, 444, 504, 507
BlsI GCNGC 4 cut(s) 7, 445, 505, 508
BmcAI AGTACT 1 cut(s) 197
BmsI GCATC 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 20, 203
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 2 cut(s) 20, 203
BseXI GCAGC 2 cut(s) 490, 493
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 178, 354
BspACI CCGC 1 cut(s) 444
BspCNI CTCAG 1 cut(s) 139
BspMI ACCTGC 2 cut(s) 193, 560
BspPI GGATC 1 cut(s) 362
BsrI ACTGG 2 cut(s) 20, 203
BssMI GATC 2 cut(s) 178, 354
Bst4CI ACNGT 2 cut(s) 170, 397
BstDEI CTNAG 2 cut(s) 147, 531
BstKTI GATC 2 cut(s) 181, 357
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 178, 354
BstNSI RCATGY 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 490, 493
BtsIMutI CAGTG 1 cut(s) 27
BveI ACCTGC 2 cut(s) 193, 560
Csp6I GTAC 4 cut(s) 73, 136, 196, 260
CviAII CATG 1 cut(s) 108
CviJI RGCY 7 cut(s) 5, 97, 151, 210, 443, 463, 535
CviKI_1 RGCY 7 cut(s) 5, 97, 151, 210, 443, 463, 535
CviQI GTAC 4 cut(s) 73, 136, 196, 260
DdeI CTNAG 2 cut(s) 147, 531
DpnI GATC 2 cut(s) 180, 356
DpnII GATC 2 cut(s) 178, 354
FaeI CATG 1 cut(s) 111
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FatI CATG 1 cut(s) 107
Fnu4HI GCNGC 4 cut(s) 6, 444, 504, 507
Fsp4HI GCNGC 4 cut(s) 6, 444, 504, 507
GluI GCNGC 4 cut(s) 6, 444, 504, 507
Hin1II CATG 1 cut(s) 111
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 2 cut(s) 95, 533
HinfI GANTC 3 cut(s) 143, 346, 421
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 55, 278
HpyCH4III ACNGT 2 cut(s) 170, 397
HpyCH4V TGCA 6 cut(s) 174, 342, 470, 509, 523, 569
HpyF3I CTNAG 2 cut(s) 147, 531
Hsp92II CATG 1 cut(s) 111
Kzo9I GATC 2 cut(s) 178, 354
LpnPI CCDG 7 cut(s) 33, 61, 184, 188, 413, 480, 555
Lsp1109I GCAGC 2 cut(s) 490, 493
LweI GCATC 1 cut(s) 518
MaeIII GTNAC 3 cut(s) 245, 391, 572
MalI GATC 2 cut(s) 180, 356
MboI GATC 2 cut(s) 178, 354
MboII GAAGA 4 cut(s) 142, 278, 307, 416
MluCI AATT 3 cut(s) 254, 308, 436
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 4 cut(s) 90, 242, 386, 477
NdeII GATC 2 cut(s) 178, 354
NlaIII CATG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 572
NspI RCATGY 1 cut(s) 111
PaqCI CACCTGC 1 cut(s) 560
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 346, 421
PkrI GCNGC 4 cut(s) 7, 445, 505, 508
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PsiI TTATAA 1 cut(s) 411
RsaI GTAC 4 cut(s) 74, 137, 197, 261
RsaNI GTAC 4 cut(s) 73, 136, 196, 260
SaqAI TTAA 4 cut(s) 90, 242, 386, 477
SatI GCNGC 4 cut(s) 6, 444, 504, 507
Sau3AI GATC 2 cut(s) 178, 354
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 1 cut(s) 152
SetI ASST 7 cut(s) 99, 153, 207, 212, 220, 537, 574
SfaNI GCATC 1 cut(s) 518
Sse9I AATT 3 cut(s) 254, 308, 436
SsiI CCGC 1 cut(s) 444
TaaI ACNGT 2 cut(s) 170, 397
TaqI TCGA 1 cut(s) 214
TasI AATT 3 cut(s) 254, 308, 436
TatI WGTACW 3 cut(s) 72, 135, 195
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 2 cut(s) 346, 421
Tru1I TTAA 4 cut(s) 90, 242, 386, 477
Tru9I TTAA 4 cut(s) 90, 242, 386, 477
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 3 cut(s) 5, 503, 506
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 4 cut(s) 282, 429, 472, 567
TspRI CASTG 1 cut(s) 27
XapI RAATTY 2 cut(s) 254, 308
XceI RCATGY 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 420
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.