Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034065.1

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4205

Gene Structure 4205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034065.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 299 bp

agataccaatcagaacagttcgtattccatctcacccaggtccaatggctgctaacaatgttccagtgggtttggacaaggaacagatttttggtatggcagagaaggagatggagtacagggttgagttatttaacaagcttacccacacatgcttcaacaagtgtgttgagaagaagtacaaggagtctgagctaaatatgggtgaaaacagttgcattgatcgttgtgtctcaaagtactggcaggtgactaatctagttggccagctgcttggtgccggtaggcctcctatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

98

Amino Acids

11.13

Weight (kDa)

8.42

Isoelectric Point (pI)

19.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	237
Acc36I	ACCTGC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	264
AfaI	GTAC	3 cut(s)	118, 181, 241
AgsI	TTSAA	1 cut(s)	159
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	3 cut(s)	141, 195, 270
AluI	AGCT	3 cut(s)	141, 195, 270
Alw26I	GTCTC	1 cut(s)	237
AoxI	GGCC	2 cut(s)	264, 286
ApeKI	GCWGC	2 cut(s)	49, 270
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	3 cut(s)	25, 217, 261
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	36, 257
BccI	CCATC	2 cut(s)	36, 105
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	50, 271
BlsI	GCNGC	2 cut(s)	51, 272
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	64, 247
Bse8I	GATNNNNATC	1 cut(s)	7
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	36
BseJI	GATNNNNATC	1 cut(s)	7
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	64, 247
BseXI	GCAGC	2 cut(s)	36, 257
BshFI	GGCC	2 cut(s)	266, 288
BshNI	GGYRCC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	266, 288
Bsp143I	GATC	1 cut(s)	222
BspANI	GGCC	2 cut(s)	266, 288
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	279
BspMI	ACCTGC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	64, 247
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	18, 214
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	191
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	36, 257
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	266, 288
BtsIMutI	CAGTG	1 cut(s)	71
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	3 cut(s)	117, 180, 240
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	6 cut(s)	49, 141, 195, 266, 270, 288
CviKI_1	RGCY	6 cut(s)	49, 141, 195, 266, 270, 288
CviQI	GTAC	3 cut(s)	117, 180, 240
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	155
FaiI	YATR	4 cut(s)	97, 153, 202, 295
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	50, 271
Fsp4HI	GCNGC	2 cut(s)	50, 271
FspBI	CTAG	1 cut(s)	259
GluI	GCNGC	2 cut(s)	50, 271
HaeIII	GGCC	2 cut(s)	266, 288
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	3 cut(s)	25, 217, 261
Hpy188I	TCNGA	2 cut(s)	13, 192
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	2 cut(s)	18, 214
HpyCH4V	TGCA	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	222
LpnPI	CCDG	8 cut(s)	23, 50, 77, 105, 228, 232, 280, 294
Lsp1109I	GCAGC	2 cut(s)	36, 257
MaeI	CTAG	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	1 cut(s)	299
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	1 cut(s)	134
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	249
NspI	RCATGY	1 cut(s)	155
PaqCI	CACCTGC	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	51, 272
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	270
RsaI	GTAC	3 cut(s)	118, 181, 241
RsaNI	GTAC	3 cut(s)	117, 180, 240
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	2 cut(s)	50, 271
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	40
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	5 cut(s)	42, 143, 197, 251, 272
SinI	GGWCC	1 cut(s)	40
SseBI	AGGCCT	1 cut(s)	288
SspMI	CTAG	1 cut(s)	259
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	18, 214
TatI	WGTACW	3 cut(s)	116, 179, 239
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	2 cut(s)	49, 270
Tsp45I	GTSAC	1 cut(s)	249
TspRI	CASTG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	40
XceI	RCATGY	1 cut(s)	155
XspI	CTAG	1 cut(s)	259
ZrmI	AGTACT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.