Rorug05G0384200

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
52141842 .. 52142111
270 bp
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UTR
Exon/CDS
Intron
Rorug05G0384200.1

Sequence Viewer

Length: 270 bp
ATGTCTGCTCCTAAACCTTCTACCAATGATTCTATCATATGGCGGCCACCTCCTTCGTCAAGTTTGAAGCTTAACTTTAATGGTTATGTTTGCCATGTTAATCGTGCTGCTGCAGGTTTTGTTGTCTGTAATTCAGATGGATATCCTTTGCCTGCTTTCAGCAAAAATCTTAGTAGCATGGACATCCCTGTGGCTGAAGGCCTGAAGCCATGGCCTTTCGTAAGGGTTTACTTCATTTGTCTCAAATTCCTCTCGATCCATTGTTGTTGA

Protein Analysis

89

Amino Acids

9.82

Weight (kDa)

8.95

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 104
AciI CCGC 1 cut(s) 43
AclWI GGATC 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 2 cut(s) 216, 224
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 250
AoxI GGCC 3 cut(s) 44, 199, 212
ApeKI GCWGC 2 cut(s) 107, 110
ApoI RAATTY 1 cut(s) 245
BbvI GCAGC 2 cut(s) 94, 97
BccI CCATC 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 104
BisI GCNGC 3 cut(s) 44, 108, 111
BlsI GCNGC 3 cut(s) 45, 109, 112
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 209
Bse8I GATNNNNATC 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 141
BseXI GCAGC 2 cut(s) 94, 97
BshFI GGCC 3 cut(s) 46, 201, 214
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 3 cut(s) 46, 201, 214
Bsp143I GATC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 209
BspACI CCGC 1 cut(s) 43
BspANI GGCC 3 cut(s) 46, 201, 214
BspMAI CTGCAG 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 104
BspPI GGATC 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 170
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 1 cut(s) 258
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 255
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 94, 97
BsuRI GGCC 3 cut(s) 46, 201, 214
BtgI CCRYGG 1 cut(s) 209
BtsCI GGATG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 153
CviAII CATG 3 cut(s) 95, 178, 210
CviJI RGCY 6 cut(s) 46, 70, 194, 201, 208, 214
CviKI_1 RGCY 6 cut(s) 46, 70, 194, 201, 208, 214
DdeI CTNAG 1 cut(s) 170
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 209
Eco147I AGGCCT 1 cut(s) 201
Eco32I GATATC 1 cut(s) 143
Eco57I CTGAAG 2 cut(s) 216, 224
EcoRV GATATC 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 3 cut(s) 98, 181, 213
FaiI YATR 6 cut(s) 38, 40, 87, 96, 179, 211
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 3 cut(s) 94, 177, 209
FauNDI CATATG 1 cut(s) 38
Fnu4HI GCNGC 3 cut(s) 44, 108, 111
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 3 cut(s) 44, 108, 111
GluI GCNGC 3 cut(s) 44, 108, 111
HaeIII GGCC 3 cut(s) 46, 201, 214
Hin1II CATG 3 cut(s) 98, 181, 213
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 3 cut(s) 27, 63, 191
HpyCH4V TGCA 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 3 cut(s) 98, 181, 213
Kzo9I GATC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 4 cut(s) 99, 165, 201, 215
Lsp1109I GCAGC 2 cut(s) 94, 97
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MluCI AATT 2 cut(s) 130, 245
MnlI CCTC 2 cut(s) 60, 260
MseI TTAA 3 cut(s) 72, 78, 99
MslI CAYNNNNRTG 1 cut(s) 188
NcoI CCATGG 1 cut(s) 209
NdeI CATATG 1 cut(s) 38
NdeII GATC 1 cut(s) 255
NlaIII CATG 3 cut(s) 98, 181, 213
PceI AGGCCT 1 cut(s) 201
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 3 cut(s) 45, 109, 112
PstI CTGCAG 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 3 cut(s) 72, 78, 99
SatI GCNGC 3 cut(s) 44, 108, 111
Sau3AI GATC 1 cut(s) 255
SetI ASST 4 cut(s) 19, 52, 72, 118
SfcI CTRYAG 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 2 cut(s) 130, 245
SseBI AGGCCT 1 cut(s) 201
SsiI CCGC 1 cut(s) 43
StuI AGGCCT 1 cut(s) 201
StyI CCWWGG 1 cut(s) 209
TaqI TCGA 1 cut(s) 254
TasI AATT 2 cut(s) 130, 245
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 72, 78, 99
Tru9I TTAA 3 cut(s) 72, 78, 99
TseI GCWGC 2 cut(s) 107, 110
TspDTI ATGAA 1 cut(s) 223
XapI RAATTY 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.