Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Forward (+)

6513826 .. 6516085

Gene Structure 2260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1080700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGAATACAGGGTTGAGTTGTTCAACAAGCTTACCCACACATGTTTCAACAAGTGCATCGAGAAGAAGTACAAGGAGTCTGAGCTAAATATGGGTGAAAACAGTTGCATTGATCGGTGCGTGTCAAAATACTGGCATGTGACTAATCTAGTCGGCCAGCTGCTTGGTTCTGGTAGGCCTCCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

63

Amino Acids

7.27

Weight (kDa)

8.41

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	3 - 55	3.8e-20	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	154
AfaI	GTAC	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	25, 49
AluBI	AGCT	3 cut(s)	31, 85, 160
AluI	AGCT	3 cut(s)	31, 85, 160
AoxI	GGCC	2 cut(s)	154, 176
ApeKI	GCWGC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
BmsI	GCATC	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	147
BshFI	GGCC	2 cut(s)	156, 178
BsnI	GGCC	2 cut(s)	156, 178
Bsp143I	GATC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	156, 178
BspCNI	CTCAG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstNSI	RCATGY	2 cut(s)	45, 140
BstV1I	GCAGC	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	156, 178
Cac8I	GCNNGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	2 cut(s)	42, 137
CviJI	RGCY	5 cut(s)	31, 85, 156, 160, 178
CviKI_1	RGCY	5 cut(s)	31, 85, 156, 160, 178
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	178
FaeI	CATG	2 cut(s)	45, 140
FaiI	YATR	4 cut(s)	43, 92, 138, 185
FatI	CATG	2 cut(s)	41, 136
Fnu4HI	GCNGC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	156, 178
Hin1II	CATG	2 cut(s)	45, 140
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	57, 108
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	45, 140
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	118, 156, 170
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	160
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	45, 140
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	2 cut(s)	45, 140
PceI	AGGCCT	1 cut(s)	178
PciI	ACATGT	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PscI	ACATGT	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	86
SetI	ASST	3 cut(s)	33, 87, 162
SfaNI	GCATC	1 cut(s)	66
SseBI	AGGCCT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	60
TatI	WGTACW	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	139
XceI	RCATGY	2 cut(s)	45, 140
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.