Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Forward (+)

33484183 .. 33485663

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1278800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGAATACAGGGTTGAGTTGTTCAACAAGTACAAGGAGTCTGAGCTAAATATGGGTGAAAACAGTTGCATTGATCGGTGCGTGTCAAAATACTGGCATCTCCCATCACCACTAGGGCAAGACCTTTTGCGAGGGAAGGTATTAGACCTCTTCGACTGCGGTGGTTTGCACTTACTAGCTCTGCGCTTATTGGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

67

Amino Acids

7.67

Weight (kDa)

5.55

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	9 - 33	3.5e-07	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	2 cut(s)	46, 179
AluI	AGCT	2 cut(s)	46, 179
AspLEI	GCGC	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	68, 99
BccI	CCATC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	113, 176
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	2 cut(s)	46, 179
CviKI_1	RGCY	2 cut(s)	46, 179
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
FaeI	CATG	1 cut(s)	201
FaiI	YATR	2 cut(s)	53, 199
FatI	CATG	1 cut(s)	197
FspBI	CTAG	2 cut(s)	113, 176
GlaI	GCGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	2 cut(s)	68, 99
Hpy188I	TCNGA	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	69, 169
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	201
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	1 cut(s)	79
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	113, 176
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	2 cut(s)	125, 158
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	195
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	47
SetI	ASST	5 cut(s)	48, 126, 141, 150, 181
SfaNI	GCATC	1 cut(s)	106
SgeI	CNNG	9 cut(s)	22, 40, 46, 94, 106, 125, 131, 143, 188
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	2 cut(s)	113, 176
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	1 cut(s)	153
TatI	WGTACW	1 cut(s)	30
XspI	CTAG	2 cut(s)	113, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.