Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Reverse (-)

73515510 .. 73517979

Gene Structure 2470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34304

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCTGCTAACAATGTTCCAGTGGGTTTGGACAAGGAACAGATTTTTGGTATGGCAGAGAAGGAGATGGAGTACAGGGTTGAGTTATTTAACAAGCTTACCCACACATGCTTCAACAAGTGTGTTGAGAAGAAGTACAAGGAGTCTGAGCTAAATATGGGTGAAAACAGTTGCATTGATCGTTGTGTCTCAAAGTACTGGCAGGTGACTAATCTAGTTGGCCAGCTGCTTGGTGCCGGTAGGCCTCCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

84

Amino Acids

9.61

Weight (kDa)

6.56

Isoelectric Point (pI)

21.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	17 - 77	1.4e-22	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	220
AfaI	GTAC	3 cut(s)	74, 137, 197
AgsI	TTSAA	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	3 cut(s)	97, 151, 226
AluI	AGCT	3 cut(s)	97, 151, 226
Alw26I	GTCTC	1 cut(s)	193
AoxI	GGCC	2 cut(s)	220, 242
ApeKI	GCWGC	2 cut(s)	5, 226
AsuHPI	GGTGA	2 cut(s)	173, 217
BalI	TGGCCA	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	6, 227
BlsI	GCNGC	2 cut(s)	7, 228
BmcAI	AGTACT	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	20, 203
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	20, 203
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	222, 244
BshNI	GGYRCC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	222, 244
Bsp143I	GATC	1 cut(s)	178
BspANI	GGCC	2 cut(s)	222, 244
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	235
BspMI	ACCTGC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	20, 203
BssAI	RCCGGY	1 cut(s)	236
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	222, 244
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	73, 136, 196
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	6 cut(s)	5, 97, 151, 222, 226, 244
CviKI_1	RGCY	6 cut(s)	5, 97, 151, 222, 226, 244
CviQI	GTAC	3 cut(s)	73, 136, 196
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	244
FaeI	CATG	1 cut(s)	111
FaiI	YATR	4 cut(s)	53, 109, 158, 251
FatI	CATG	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	6, 227
Fsp4HI	GCNGC	2 cut(s)	6, 227
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	2 cut(s)	6, 227
HaeIII	GGCC	2 cut(s)	222, 244
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	173, 217
Hpy188I	TCNGA	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	174
HpyF3I	CTNAG	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	33, 61, 184, 188, 236, 250
Lsp1109I	GCAGC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	1 cut(s)	255
Mox20I	TGGCCA	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	1 cut(s)	237
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	111
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	111
PaqCI	CACCTGC	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	7, 228
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	226
RsaI	GTAC	3 cut(s)	74, 137, 197
RsaNI	GTAC	3 cut(s)	73, 136, 196
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	6, 227
Sau3AI	GATC	1 cut(s)	178
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	152
SetI	ASST	4 cut(s)	99, 153, 207, 228
SseBI	AGGCCT	1 cut(s)	244
SspMI	CTAG	1 cut(s)	215
StuI	AGGCCT	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	170
TatI	WGTACW	3 cut(s)	72, 135, 195
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	5, 226
Tsp45I	GTSAC	1 cut(s)	205
TspRI	CASTG	1 cut(s)	27
XceI	RCATGY	1 cut(s)	111
XspI	CTAG	1 cut(s)	215
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.