Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Reverse (-)

67348193 .. 67350448

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG482900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGACCTTTCTGAAAGGTTTCAACATATTTTGTTTTGGATAATCAATTCACTGACATTAATAAACAAGTTGCCTTGTACAACCAGGTACAAGGAGTCTGAGCTAAATATGGGTGAAAACAGTTGCATTGATCGTTGTGTCTCAAAGTACTGGCAGGTAAGCTATCGAGGTGTTTTCTTATGGATTATTGGGTTAAGTTACAGCAAATTCGTACTTGCCCTTCAAGTATTTATATTTCTTCTTTCATTCCTTATATTGGAATTTATCTTCAAACATTTGTTATCATCAAGTTGCAAGATTCTTGGGATCGCCATTTATTGTCATAGTAAAGTGTTTTTAAGCGTAACTGTTTTTTTTGGTTATAATGAAGTGATTCTTCTGGTTGACAATTCAGCCGCAAAAGAAAGTAATAAGCCCCCTGCATATATTAACTTCATACAGTTCACACTTTTTGCTGCTGCATCTATACTTCTGCACAAATCTAAGCTTCTTTTGTGTCTAAATGAAAAACTATTGTTTGCAGGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

176

Amino Acids

20.24

Weight (kDa)

8.72

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	26 - 55	3e-08	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AarI	CACCTGC	1 cut(s)	512
Acc36I	ACCTGC	2 cut(s)	145, 512
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	1 cut(s)	314
AcsI	RAATTY	2 cut(s)	206, 260
AfaI	GTAC	4 cut(s)	79, 89, 149, 213
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	3 cut(s)	23, 224, 271
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	3 cut(s)	103, 162, 487
AluI	AGCT	3 cut(s)	103, 162, 487
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	455, 458
ApoI	RAATTY	2 cut(s)	206, 260
AseI	ATTAAT	1 cut(s)	59
Asp700I	GAANNNNTTC	2 cut(s)	18, 372
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BbvI	GCAGC	2 cut(s)	442, 445
BciT130I	CCWGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	145
BfuAI	ACCTGC	2 cut(s)	145, 512
BisI	GCNGC	3 cut(s)	396, 456, 459
BlsI	GCNGC	3 cut(s)	397, 457, 460
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	442, 445
BsgI	GTGCAG	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	130, 306
BspACI	CCGC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	91
BspMI	ACCTGC	2 cut(s)	145, 512
BspPI	GGATC	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	155
BssMI	GATC	2 cut(s)	130, 306
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	3 cut(s)	122, 349, 441
BstAUI	TGTACA	1 cut(s)	77
BstDEI	CTNAG	2 cut(s)	99, 483
BstKTI	GATC	2 cut(s)	133, 309
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	2 cut(s)	130, 306
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	442, 445
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	2 cut(s)	145, 512
Cfr13I	GGNCC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	83
Csp6I	GTAC	4 cut(s)	78, 88, 148, 212
CviJI	RGCY	5 cut(s)	103, 162, 395, 415, 487
CviKI_1	RGCY	5 cut(s)	103, 162, 395, 415, 487
CviQI	GTAC	4 cut(s)	78, 88, 148, 212
DdeI	CTNAG	2 cut(s)	99, 483
DpnI	GATC	2 cut(s)	132, 308
DpnII	GATC	2 cut(s)	130, 306
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	83
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
Fnu4HI	GCNGC	3 cut(s)	396, 456, 459
Fsp4HI	GCNGC	3 cut(s)	396, 456, 459
GluI	GCNGC	3 cut(s)	396, 456, 459
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	3 cut(s)	95, 298, 373
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	385, 444
Hpy188I	TCNGA	2 cut(s)	13, 100
Hpy8I	GTNNAC	2 cut(s)	385, 444
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	3 cut(s)	122, 349, 441
HpyCH4V	TGCA	6 cut(s)	126, 294, 422, 461, 475, 521
HpyF3I	CTNAG	2 cut(s)	99, 483
Kzo9I	GATC	2 cut(s)	130, 306
LpnPI	CCDG	7 cut(s)	70, 97, 136, 140, 365, 432, 507
Lsp1109I	GCAGC	2 cut(s)	442, 445
LweI	GCATC	1 cut(s)	470
MabI	ACCWGGT	1 cut(s)	83
MaeIII	GTNAC	3 cut(s)	197, 343, 524
MalI	GATC	2 cut(s)	132, 308
MboI	GATC	2 cut(s)	130, 306
MboII	GAAGA	3 cut(s)	230, 259, 368
MluCI	AATT	4 cut(s)	46, 206, 260, 388
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	1 cut(s)	161
MroXI	GAANNNNTTC	2 cut(s)	18, 372
MseI	TTAA	4 cut(s)	59, 194, 338, 429
MspR9I	CCNGG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	130, 306
NmuCI	GTSAC	1 cut(s)	524
PaqCI	CACCTGC	1 cut(s)	512
PdmI	GAANNNNTTC	2 cut(s)	18, 372
PfeI	GAWTC	2 cut(s)	298, 373
PkrI	GCNGC	3 cut(s)	397, 457, 460
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PshBI	ATTAAT	1 cut(s)	59
PsiI	TTATAA	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	4 cut(s)	79, 89, 149, 213
RsaNI	GTAC	4 cut(s)	78, 88, 148, 212
SaqAI	TTAA	4 cut(s)	59, 194, 338, 429
SatI	GCNGC	3 cut(s)	396, 456, 459
Sau3AI	GATC	2 cut(s)	130, 306
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	149
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	9 cut(s)	9, 20, 89, 105, 159, 164, 172, 489, 526
SexAI	ACCWGGT	1 cut(s)	83
SfaNI	GCATC	1 cut(s)	470
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	4 cut(s)	46, 206, 260, 388
SsiI	CCGC	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	3 cut(s)	122, 349, 441
TaqI	TCGA	1 cut(s)	166
TasI	AATT	4 cut(s)	46, 206, 260, 388
TatI	WGTACW	2 cut(s)	77, 147
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	298, 373
Tru1I	TTAA	4 cut(s)	59, 194, 338, 429
Tru9I	TTAA	4 cut(s)	59, 194, 338, 429
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	2 cut(s)	455, 458
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	4 cut(s)	234, 381, 424, 519
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	59
XapI	RAATTY	2 cut(s)	206, 260
XmnI	GAANNNNTTC	2 cut(s)	18, 372
ZrmI	AGTACT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.