Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Forward (+)

4509452 .. 4511685

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G065200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCTGCTGCTCCTAACAATGCGCCGACGGCTGTGGACAAGGAACAGATTTTTGGTATGGCAGAGAAGGAGATGGAGTACAGGGTTGAGTTGTTTAACAAGCTTACCCACACGTGTTTCAACAAGTGCGTTGAGAAGAAGTACAAGGAGGCTGAGTTAAATATGGGTGAAAACAGTTGCATTGATCGCTGTGTCTCAAAATACTGGCATGTAACTAATCTAGTTGGACAGCTGCTTGGTGCCGGTCGGCCTCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

87

Amino Acids

9.74

Weight (kDa)

6.71

Isoelectric Point (pI)

19.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	114
AfaI	GTAC	2 cut(s)	80, 143
AflIII	ACRYGT	2 cut(s)	111, 113
AgsI	TTSAA	1 cut(s)	121
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	2 cut(s)	103, 232
AluI	AGCT	2 cut(s)	103, 232
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	5, 8, 232
AspLEI	GCGC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	239
BbrPI	CACGTG	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	3 cut(s)	6, 9, 233
BlsI	GCNGC	3 cut(s)	7, 10, 234
BmiI	GGNNCC	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	114
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 140, 170
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	184
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	242
BssMI	GATC	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 186
BstNSI	RCATGY	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	250
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	79, 142
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	6 cut(s)	5, 32, 103, 152, 232, 250
CviKI_1	RGCY	6 cut(s)	5, 32, 103, 152, 232, 250
CviQI	GTAC	2 cut(s)	79, 142
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eco72I	CACGTG	1 cut(s)	114
FaeI	CATG	1 cut(s)	212
FaiI	YATR	3 cut(s)	59, 164, 210
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	6, 9, 233
Fsp4HI	GCNGC	3 cut(s)	6, 9, 233
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	6, 9, 233
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	101
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 186
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	3 cut(s)	67, 190, 256
Lsp1109I	GCAGC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	2 cut(s)	142, 261
MseI	TTAA	2 cut(s)	96, 158
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	29, 186
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	7, 10, 234
PmaCI	CACGTG	1 cut(s)	114
PmlI	CACGTG	1 cut(s)	114
Ppu21I	YACGTR	1 cut(s)	114
PspCI	CACGTG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	232
RsaI	GTAC	2 cut(s)	80, 143
RsaNI	GTAC	2 cut(s)	79, 142
SaqAI	TTAA	2 cut(s)	96, 158
SatI	GCNGC	3 cut(s)	6, 9, 233
Sau3AI	GATC	1 cut(s)	184
SetI	ASST	3 cut(s)	105, 116, 234
SspMI	CTAG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	1 cut(s)	116
TatI	WGTACW	2 cut(s)	78, 141
Tru1I	TTAA	2 cut(s)	96, 158
Tru9I	TTAA	2 cut(s)	96, 158
TseI	GCWGC	3 cut(s)	5, 8, 232
XceI	RCATGY	1 cut(s)	212
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.