Rh5AG443600

Mitochondrial import inner membrane translocase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002651
Physical Location & Seq
Reverse (-)
76113089 .. 76116869
3781 bp
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UTR
Exon/CDS
Intron
Rh5AG443600.1

Sequence Viewer

Length: 417 bp
ATGGCTGCTAACAATGTTCCAGTGGGTTTGGACAAGGAACAGATTTTTGGTATGGCAGAGAAGGAGATGGAGTACAGGGTTGAGTTATTTAACAAGCTTACCCACACATGCTTCAACAAGTGTGTTGAGAAGAAGTACAAGGAGTCTGAGCTAAATATGGGTGAAAACAGTTGCATTGATCGTTGTGTCTCAAAGTACTGGCAGGTAAGCTATCGAGGTGTTTTCTTATGGATTATTGGTTTAATTTACAGCAAATTCGTACTTGCCCTTCAAGTATTTATATTTCTTCACTCATTCCTTATATTGGAATTTATCTTCAAACATTTGTTATCATCAAGTTGCAAGACTCTTGGGATCGCCATTTATTGTCATAGTAAAGTGTTTTTAAGCGTAACTGTTTTTTTTTTTTGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Tim10_DDP

Protein Analysis

138

Amino Acids

16.19

Weight (kDa)

8.51

Isoelectric Point (pI)

25.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Tim10_DDP PF02953 17 - 71 1.2e-19 Tim10/DDP family zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 193
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 2 cut(s) 254, 308
AfaI GTAC 4 cut(s) 74, 137, 197, 261
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 3 cut(s) 115, 272, 319
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 3 cut(s) 97, 151, 210
AluI AGCT 3 cut(s) 97, 151, 210
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 1 cut(s) 362
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 254, 308
AsuHPI GGTGA 1 cut(s) 173
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BccI CCATC 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 20, 203
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 2 cut(s) 20, 203
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 178, 354
BspCNI CTCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 1 cut(s) 362
BsrI ACTGG 2 cut(s) 20, 203
BssMI GATC 2 cut(s) 178, 354
Bst4CI ACNGT 2 cut(s) 170, 397
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 2 cut(s) 181, 357
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 178, 354
BstNSI RCATGY 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 27
BveI ACCTGC 1 cut(s) 193
Csp6I GTAC 4 cut(s) 73, 136, 196, 260
CviAII CATG 1 cut(s) 108
CviJI RGCY 4 cut(s) 5, 97, 151, 210
CviKI_1 RGCY 4 cut(s) 5, 97, 151, 210
CviQI GTAC 4 cut(s) 73, 136, 196, 260
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 180, 356
DpnII GATC 2 cut(s) 178, 354
FaeI CATG 1 cut(s) 111
FaiI YATR 7 cut(s) 53, 109, 158, 229, 281, 302, 372
FatI CATG 1 cut(s) 107
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 2 cut(s) 143, 346
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 148
HpyAV CCTTC 2 cut(s) 55, 278
HpyCH4III ACNGT 2 cut(s) 170, 397
HpyCH4V TGCA 2 cut(s) 174, 342
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 1 cut(s) 111
Kzo9I GATC 2 cut(s) 178, 354
LpnPI CCDG 4 cut(s) 33, 61, 184, 188
MaeIII GTNAC 1 cut(s) 391
MalI GATC 2 cut(s) 180, 356
MboI GATC 2 cut(s) 178, 354
MboII GAAGA 3 cut(s) 142, 278, 307
MluCI AATT 3 cut(s) 243, 254, 308
MlyI GAGTC 2 cut(s) 152, 340
MnlI CCTC 1 cut(s) 209
MseI TTAA 3 cut(s) 90, 242, 386
NdeII GATC 2 cut(s) 178, 354
NlaIII CATG 1 cut(s) 111
NspI RCATGY 1 cut(s) 111
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 151, 340
PpsI GAGTC 2 cut(s) 151, 340
RsaI GTAC 4 cut(s) 74, 137, 197, 261
RsaNI GTAC 4 cut(s) 73, 136, 196, 260
SaqAI TTAA 3 cut(s) 90, 242, 386
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 178, 354
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 2 cut(s) 152, 340
SetI ASST 5 cut(s) 99, 153, 207, 212, 220
Sse9I AATT 3 cut(s) 243, 254, 308
TaaI ACNGT 2 cut(s) 170, 397
TaqI TCGA 1 cut(s) 214
TasI AATT 3 cut(s) 243, 254, 308
TatI WGTACW 3 cut(s) 72, 135, 195
Tru1I TTAA 3 cut(s) 90, 242, 386
Tru9I TTAA 3 cut(s) 90, 242, 386
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 5
TspRI CASTG 1 cut(s) 27
XapI RAATTY 2 cut(s) 254, 308
XceI RCATGY 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.