Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Forward (+)

20247005 .. 20247986

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1203300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGCTGCCCCTAATGAGCCGACGGTTTTGGACAAGGAACAGATTTTTGGTATGGCCGAGAAGGAGATGGAATACAGGGTTGAGTTGTTCAACAAGCTTACCCACACATGTTTCAACAAGTGCGTCGAGAAGAAGTATGAGAACTCTTTTCTTTTCTCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

55

Amino Acids

6.39

Weight (kDa)

5.25

Isoelectric Point (pI)

23.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	17 - 48	2e-08	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	54
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	91, 115
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	5
BccI	CCATC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	56
CseI	GACGC	1 cut(s)	112
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	4 cut(s)	5, 19, 56, 97
CviKI_1	RGCY	4 cut(s)	5, 19, 56, 97
EaeI	YGGCCR	1 cut(s)	54
FaeI	CATG	1 cut(s)	111
FaiI	YATR	3 cut(s)	53, 109, 138
FatI	CATG	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	56
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	127
Hpy99I	CGWCG	2 cut(s)	25, 128
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	25
Hsp92II	CATG	1 cut(s)	111
LpnPI	CCDG	1 cut(s)	61
MboII	GAAGA	1 cut(s)	142
NlaIII	CATG	1 cut(s)	111
NmeAIII	GCCGAG	1 cut(s)	82
NspI	RCATGY	1 cut(s)	111
PciI	ACATGT	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	7
PscI	ACATGT	1 cut(s)	107
SatI	GCNGC	1 cut(s)	6
SetI	ASST	1 cut(s)	99
SgeI	CNNG	7 cut(s)	46, 70, 88, 106, 120, 130, 139
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	126
TseI	GCWGC	1 cut(s)	5
XceI	RCATGY	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.