Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000015.1

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Forward (+)

1372 .. 7290

Gene Structure 5919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000015.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgttggctgttgttgaagctgcgcagagtcacaggcattctgtgagtgacgtgtccgtttcggatgagtccacgtttgattcttgtgggtcggatagttgttctttggagggtgtggatttggagagtggggttttggagctgaagaataaggtggtggtgcatttgagtaaggttgagagaatttgcagaatttgccacttgggttttgagggtggtgggttggactcttctgggcttccaattgacttgggatgttcttgcaagggtgatttgggtgctgctcataagcaatgtgctgagacttggttcaagatcaagggtgatacaatctgcgagatctgtggtgtcgttgcatttaacatagttggtgagcagatcaacgaggcaaatggagccatcgccccaacatccccttcaacacaaccagcagcatctgtgatcatggtggaaacccaaaccatgtggcatggccgccgcattatgaatttcctgcttgcttgcatgatcattgcctttaaactccggaagtccccggaagctggtggcctgacgctggtgcctcagttagcagcccttagggccggctctggaacagttcgtattccatctcacccaggtccaatggctgctaacaatgttccagtgggtttggacaaggaacagatttttggtatggcagagaaggagatggagtacagggttgagttatttaacaagcttacccacacatgcttcaacaagtgtgttgagaagaagtacaaggagtctgagctaaatatgggtgaaaacagttgcattgatcgttgtgtctcaaagtactggcaggtgactaatctagttggccagctgcttggtgccggtaggcctcctatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

292

Amino Acids

31.46

Weight (kDa)

5.93

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	817
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	817
AccB1I	GGYRCC	2 cut(s)	559, 857
AccIII	TCCGGA	1 cut(s)	525
AciI	CCGC	2 cut(s)	475, 478
AcoI	YGGCCR	2 cut(s)	472, 844
AcsI	RAATTY	3 cut(s)	183, 192, 487
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	3 cut(s)	698, 761, 821
AfiI	CCNNNNNNNGG	2 cut(s)	542, 556
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	4 cut(s)	17, 313, 420, 739
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	616
AjuI	GAANNNNNNNTTGG	4 cut(s)	400, 432, 654, 686
AluBI	AGCT	6 cut(s)	20, 142, 542, 721, 775, 850
AluI	AGCT	6 cut(s)	20, 142, 542, 721, 775, 850
Alw26I	GTCTC	2 cut(s)	296, 817
AlwNI	CAGNNNCTG	1 cut(s)	437
Aor13HI	TCCGGA	1 cut(s)	525
AoxI	GGCC	5 cut(s)	472, 547, 582, 844, 866
ApeKI	GCWGC	6 cut(s)	20, 281, 431, 572, 629, 850
ApoI	RAATTY	3 cut(s)	183, 192, 487
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	582, 620
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	6 cut(s)	281, 335, 383, 605, 797, 841
AvaII	GGWCC	1 cut(s)	620
AxyI	CCTNAGG	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	846
BanI	GGYRCC	2 cut(s)	559, 857
BbvI	GCAGC	6 cut(s)	7, 268, 443, 584, 616, 837
BccI	CCATC	3 cut(s)	407, 616, 685
BciT130I	CCWGG	1 cut(s)	618
BclI	TGATCA	2 cut(s)	441, 507
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	2 cut(s)	296, 817
BfaI	CTAG	1 cut(s)	839
BfuAI	ACCTGC	1 cut(s)	817
BglI	GCCNNNNNGGC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	8 cut(s)	21, 282, 432, 475, 478, 573, 630, 851
BlsI	GCNGC	8 cut(s)	22, 283, 433, 476, 479, 574, 631, 852
BmcAI	AGTACT	1 cut(s)	821
Bme1390I	CCNGG	2 cut(s)	536, 618
Bme18I	GGWCC	1 cut(s)	620
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	582, 620
BmiI	GGNNCC	3 cut(s)	397, 561, 859
BmrFI	CCNGG	2 cut(s)	536, 618
BmsI	GCATC	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	534, 616
BsaWI	WCCGGW	1 cut(s)	525
BsaXI	ACNNNNNCTCC	2 cut(s)	680, 710
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 556
Bse118I	RCCGGY	2 cut(s)	584, 860
Bse1I	ACTGG	2 cut(s)	644, 827
Bse21I	CCTNAGG	1 cut(s)	578
Bse3DI	GCAATG	2 cut(s)	299, 510
BseAI	TCCGGA	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	2 cut(s)	534, 616
BseGI	GGATG	3 cut(s)	70, 260, 410
BseLI	CCNNNNNNNGG	2 cut(s)	542, 556
BseMI	GCAATG	2 cut(s)	299, 510
BseMII	CTCAG	3 cut(s)	291, 578, 762
BseNI	ACTGG	2 cut(s)	644, 827
BseXI	GCAGC	6 cut(s)	7, 268, 443, 584, 616, 837
BshFI	GGCC	5 cut(s)	474, 549, 584, 846, 868
BshNI	GGYRCC	2 cut(s)	559, 857
BsiSI	CCGG	4 cut(s)	526, 536, 585, 861
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	2 cut(s)	542, 556
BsmAI	GTCTC	2 cut(s)	296, 817
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	5 cut(s)	474, 549, 584, 846, 868
Bsp13I	TCCGGA	1 cut(s)	525
Bsp143I	GATC	6 cut(s)	315, 339, 378, 441, 507, 802
BspACI	CCGC	2 cut(s)	475, 478
BspANI	GGCC	5 cut(s)	474, 549, 584, 846, 868
BspCNI	CTCAG	3 cut(s)	292, 577, 763
BspEI	TCCGGA	1 cut(s)	525
BspLI	GGNNCC	3 cut(s)	397, 561, 859
BspMI	ACCTGC	1 cut(s)	817
BspT107I	GGYRCC	2 cut(s)	559, 857
BsrDI	GCAATG	2 cut(s)	299, 510
BsrFI	RCCGGY	2 cut(s)	584, 860
BsrI	ACTGG	2 cut(s)	644, 827
BssAI	RCCGGY	2 cut(s)	584, 860
BssECI	CCNNGG	2 cut(s)	534, 616
BssMI	GATC	6 cut(s)	315, 339, 378, 441, 507, 802
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	2 cut(s)	598, 794
Bst6I	CTCTTC	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstC8I	GCNNGC	4 cut(s)	498, 502, 586, 848
BstDEI	CTNAG	4 cut(s)	300, 564, 578, 771
BstF5I	GGATG	3 cut(s)	70, 260, 410
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	6 cut(s)	318, 342, 381, 444, 510, 805
BstMAI	GTCTC	2 cut(s)	296, 817
BstMBI	GATC	6 cut(s)	315, 339, 378, 441, 507, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 395, 581
BstNI	CCWGG	1 cut(s)	618
BstNSI	RCATGY	1 cut(s)	735
BstSCI	CCNGG	2 cut(s)	534, 616
BstV1I	GCAGC	6 cut(s)	7, 268, 443, 584, 616, 837
BstX2I	RGATCY	1 cut(s)	339
BstXI	CCANNNNNNTGG	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	339
Bsu36I	CCTNAGG	1 cut(s)	578
BsuRI	GGCC	5 cut(s)	474, 549, 584, 846, 868
BtgZI	GCGATG	1 cut(s)	385
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	3 cut(s)	70, 260, 410
BtsIMutI	CAGTG	1 cut(s)	651
BveI	ACCTGC	1 cut(s)	817
Cac8I	GCNNGC	4 cut(s)	498, 502, 586, 848
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	2 cut(s)	584, 860
Cfr13I	GGNCC	2 cut(s)	582, 620
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	3 cut(s)	697, 760, 820
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	5 cut(s)	445, 463, 470, 505, 732
CviQI	GTAC	3 cut(s)	697, 760, 820
DdeI	CTNAG	4 cut(s)	300, 564, 578, 771
DpnI	GATC	6 cut(s)	317, 341, 380, 443, 509, 804
DpnII	GATC	6 cut(s)	315, 339, 378, 441, 507, 802
DraI	TTTAAA	1 cut(s)	520
EaeI	YGGCCR	2 cut(s)	472, 844
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	868
Eco47I	GGWCC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	616
FaeI	CATG	5 cut(s)	448, 466, 473, 508, 735
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	5 cut(s)	444, 462, 469, 504, 731
FbaI	TGATCA	2 cut(s)	441, 507
Fnu4HI	GCNGC	8 cut(s)	21, 282, 432, 475, 478, 573, 630, 851
FokI	GGATG	3 cut(s)	77, 267, 397
Fsp4HI	GCNGC	8 cut(s)	21, 282, 432, 475, 478, 573, 630, 851
FspBI	CTAG	1 cut(s)	839
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	8 cut(s)	21, 282, 432, 475, 478, 573, 630, 851
HaeIII	GGCC	5 cut(s)	474, 549, 584, 846, 868
HapII	CCGG	4 cut(s)	526, 536, 585, 861
HgaI	GACGC	1 cut(s)	562
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	5 cut(s)	448, 466, 473, 508, 735
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	5 cut(s)	28, 68, 80, 227, 767
HpaII	CCGG	4 cut(s)	526, 536, 585, 861
HphI	GGTGA	6 cut(s)	281, 335, 383, 605, 797, 841
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	3 cut(s)	64, 94, 772
Hpy188III	TCNNGA	3 cut(s)	313, 526, 591
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	2 cut(s)	426, 679
HpyCH4III	ACNGT	2 cut(s)	598, 794
HpyCH4IV	ACGT	2 cut(s)	51, 74
HpyCH4V	TGCA	6 cut(s)	163, 189, 264, 356, 504, 798
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 395, 581
HpyF3I	CTNAG	4 cut(s)	300, 564, 578, 771
HpySE526I	ACGT	2 cut(s)	51, 74
Hsp92II	CATG	5 cut(s)	448, 466, 473, 508, 735
HspAI	GCGC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	525
KroI	GCCGGC	1 cut(s)	584
KroNI	GCCGGC	1 cut(s)	586
Ksp22I	TGATCA	2 cut(s)	441, 507
Kzo9I	GATC	6 cut(s)	315, 339, 378, 441, 507, 802
LmnI	GCTCC	2 cut(s)	139, 395
Lsp1109I	GCAGC	6 cut(s)	7, 268, 443, 584, 616, 837
LweI	GCATC	1 cut(s)	443
MaeI	CTAG	1 cut(s)	839
MaeII	ACGT	2 cut(s)	51, 74
MaeIII	GTNAC	3 cut(s)	29, 47, 829
MalI	GATC	6 cut(s)	317, 341, 380, 443, 509, 804
MboI	GATC	6 cut(s)	315, 339, 378, 441, 507, 802
MboII	GAAGA	3 cut(s)	157, 222, 766
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	846
MluCI	AATT	4 cut(s)	183, 192, 243, 487
MluNI	TGGCCA	1 cut(s)	846
MlyI	GAGTC	4 cut(s)	37, 77, 221, 776
MmeI	TCCRAC	2 cut(s)	72, 204
MnlI	CCTC	5 cut(s)	103, 205, 379, 573, 879
Mox20I	TGGCCA	1 cut(s)	846
MroI	TCCGGA	1 cut(s)	525
MroNI	GCCGGC	1 cut(s)	584
MscI	TGGCCA	1 cut(s)	846
MseI	TTAA	3 cut(s)	360, 519, 714
Msp20I	TGGCCA	1 cut(s)	846
MspA1I	CMGCKG	1 cut(s)	850
MspI	CCGG	4 cut(s)	526, 536, 585, 861
MspR9I	CCNGG	2 cut(s)	536, 618
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	3 cut(s)	195, 395, 581
NaeI	GCCGGC	1 cut(s)	586
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	6 cut(s)	315, 339, 378, 441, 507, 802
NgoMIV	GCCGGC	1 cut(s)	584
NlaIII	CATG	5 cut(s)	448, 466, 473, 508, 735
NlaIV	GGNNCC	3 cut(s)	397, 561, 859
NmuCI	GTSAC	3 cut(s)	29, 47, 829
NsbI	TGCGCA	1 cut(s)	24
NspI	RCATGY	1 cut(s)	735
PaqCI	CACCTGC	1 cut(s)	817
PceI	AGGCCT	1 cut(s)	868
PctI	GAATGC	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	586
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	8 cut(s)	22, 283, 433, 476, 479, 574, 631, 852
PleI	GAGTC	4 cut(s)	36, 76, 221, 775
PpsI	GAGTC	4 cut(s)	36, 76, 221, 775
Psp6I	CCWGG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	3 cut(s)	397, 561, 859
PspPI	GGNCC	2 cut(s)	582, 620
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	339
PvuII	CAGCTG	1 cut(s)	850
RsaI	GTAC	3 cut(s)	698, 761, 821
RsaNI	GTAC	3 cut(s)	697, 760, 820
SaqAI	TTAA	3 cut(s)	360, 519, 714
SatI	GCNGC	8 cut(s)	21, 282, 432, 475, 478, 573, 630, 851
Sau3AI	GATC	6 cut(s)	315, 339, 378, 441, 507, 802
Sau96I	GGNCC	2 cut(s)	582, 620
ScaI	AGTACT	1 cut(s)	821
SchI	GAGTC	4 cut(s)	37, 77, 221, 776
ScrFI	CCNGG	2 cut(s)	536, 618
SfaNI	GCATC	1 cut(s)	443
SinI	GGWCC	1 cut(s)	620
Sse9I	AATT	4 cut(s)	183, 192, 243, 487
SseBI	AGGCCT	1 cut(s)	868
SsiI	CCGC	2 cut(s)	475, 478
SspMI	CTAG	1 cut(s)	839
StuI	AGGCCT	1 cut(s)	868
StyD4I	CCNGG	2 cut(s)	534, 616
TaaI	ACNGT	2 cut(s)	598, 794
TaiI	ACGT	2 cut(s)	54, 77
TasI	AATT	4 cut(s)	183, 192, 243, 487
TatI	WGTACW	3 cut(s)	696, 759, 819
TauI	GCSGC	2 cut(s)	477, 480
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	3 cut(s)	360, 519, 714
Tru9I	TTAA	3 cut(s)	360, 519, 714
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	3 cut(s)	29, 47, 829
TseI	GCWGC	6 cut(s)	20, 281, 431, 572, 629, 850
Tsp45I	GTSAC	3 cut(s)	29, 47, 829
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	651
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	3 cut(s)	183, 192, 487
XceI	RCATGY	1 cut(s)	735
XspI	CTAG	1 cut(s)	839
ZrmI	AGTACT	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.