Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002651

Physical Location & Seq

Genomic Coordinates Forward (+)

4505356 .. 4508586

Gene Structure 3231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G065100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCAGCTGCTGCTGAGGCTACCCATTACCGCCATTCAGTCAGCGGAGGCAGTGACGTGTCAGCCTCCGATGACTCGGACGACCAGTCTTGGCACTCCATGCTTGAGTCCACCGCAGGAGGAGGAGGAGGGCCTAAGTCTCAGCTTTCTGGGGTGTCTGTTTCAGGCAATGTTCAGAGGGGCTCTTGTGACTCAAATTGCTCTCTGGAGTTGGATTTGGAGAGTGGGGTTTTGGAGTTGAAGGTGGTGCATTTGAGTAAAGTTGAAAGAAATTGCAGAATTTGCCACCTGGGTTTGGAGGGTGGTGGCCCAGATGGGATCCCAATTGACTTGGGTTGCTCTTGCAAGGGTGATTTGGGTGCTGCTCATAAGCAATGTGCTGAGACTTGGTTCAAGATCAAGGGCGATACAACCTGCGAGATCTGTGGCTCCACTGCATTCAACATTGCCACTGAGCAGACAAATGAGGCAAATGGCACTACTACCACACTCCCATCAGTACCAGCAGCACCCATGATCCTGGTGGAAACCAGAACCATGTGGCATGGCCGCCGCATTATGAATTTCCTGCTTGCCTGCATGATCTTTGCCTTTGTAATCTCATGGCTTTTTCACTTCAAAGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

210

Amino Acids

22.15

Weight (kDa)

5.4

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29530 AT2G29530 AT2G29530
fragaria_vesca	FvH4_3g37430 FvH4_3g37430 FvH4_3g37440
malus_domestica	MD02G1203300.v1.1 MD02G1278800.v1.1 MD03G1080600.v1.1 MD03G1080700.v1.1 MD11G1085200.v1.1
prunus_persica	Prupe.6G065100_v2.0.a1 Prupe.6G065200_v2.0.a1
pyrus_communis	pycom03g06430 pycom03g06440 pycom11g07370
rosa_chinensis	RchiOBHm_Chr5g0067321 RchiOBHm_Chr5g0067331
rosa_laevigata	RLG00000018721 RLG00000035927
rosa_multiflora	Rmu_sc0000015.1_g000001 Rmu_sc0024489.1_g000001 Rmu_sc0034065.1_g000001 Rmu_ssc0000354.1_g000002
rosa_roxburghii	Rroxscaffold_1G00013750
rosa_rugosa	Rorug05G0384200 Rorug05G0384300 Rorug05G0384400
rosa_samantha	Rh5AG443600 Rh5AG443700 Rh5BG460600 Rh5BG460700 Rh5CG482900 Rh5CG483000 Rh5DG475700 Rh5DG475800 Rh6DG258900
rosa_wichuraiana	Rw2G027490 Rw5G041430 Rw5G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	422
AciI	CCGC	5 cut(s)	31, 45, 114, 550, 553
AclWI	GGATC	3 cut(s)	313, 326, 511
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	279, 562
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	5 cut(s)	241, 266, 394, 442, 619
AhdI	GACNNNNNGTC	1 cut(s)	85
AjiI	CACGTC	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	288, 519
AluBI	AGCT	2 cut(s)	8, 145
AluI	AGCT	2 cut(s)	8, 145
Alw26I	GTCTC	2 cut(s)	144, 377
AlwI	GGATC	3 cut(s)	313, 326, 511
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	3 cut(s)	131, 307, 547
ApeKI	GCWGC	4 cut(s)	8, 11, 362, 506
ApoI	RAATTY	2 cut(s)	279, 562
AspS9I	GGNCC	2 cut(s)	131, 308
AsuHPI	GGTGA	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	185
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	349, 518
BccI	CCATC	2 cut(s)	308, 502
BciT130I	CCWGG	2 cut(s)	290, 521
BcoDI	GTCTC	2 cut(s)	144, 377
BfuAI	ACCTGC	1 cut(s)	422
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	6 cut(s)	9, 12, 363, 507, 550, 553
BlsI	GCNGC	6 cut(s)	10, 13, 364, 508, 551, 554
Bme1390I	CCNGG	2 cut(s)	290, 521
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	131, 308
BmiI	GGNNCC	2 cut(s)	320, 430
BmrFI	CCNGG	2 cut(s)	290, 521
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	3 cut(s)	175, 380, 444
BseBI	CCWGG	2 cut(s)	290, 521
BseDI	CCNNGG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	3 cut(s)	175, 380, 444
BseMII	CTCAG	4 cut(s)	6, 155, 372, 444
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	3 cut(s)	135, 138, 141
BseXI	GCAGC	2 cut(s)	349, 518
BshFI	GGCC	3 cut(s)	133, 309, 549
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	2 cut(s)	144, 377
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	133, 309, 549
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	5 cut(s)	318, 396, 420, 516, 582
BspACI	CCGC	5 cut(s)	31, 45, 114, 550, 553
BspANI	GGCC	3 cut(s)	133, 309, 549
BspCNI	CTCAG	4 cut(s)	7, 154, 373, 445
BspLI	GGNNCC	2 cut(s)	320, 430
BspMI	ACCTGC	1 cut(s)	422
BspPI	GGATC	3 cut(s)	313, 326, 511
BsrDI	GCAATG	3 cut(s)	175, 380, 444
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	5 cut(s)	318, 396, 420, 516, 582
Bst2UI	CCWGG	2 cut(s)	290, 521
BstAPI	GCANNNNNTGC	2 cut(s)	100, 282
BstC8I	GCNNGC	2 cut(s)	573, 577
BstDEI	CTNAG	5 cut(s)	15, 135, 141, 381, 453
BstKTI	GATC	5 cut(s)	321, 399, 423, 519, 585
BstMAI	GTCTC	2 cut(s)	144, 377
BstMBI	GATC	5 cut(s)	318, 396, 420, 516, 582
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 100, 282
BstNI	CCWGG	2 cut(s)	290, 521
BstSCI	CCNGG	2 cut(s)	288, 519
BstV1I	GCAGC	2 cut(s)	349, 518
BstX2I	RGATCY	2 cut(s)	318, 420
BstXI	CCANNNNNNTGG	1 cut(s)	520
BstYI	RGATCY	2 cut(s)	318, 420
BsuRI	GGCC	3 cut(s)	133, 309, 549
BtrI	CACGTC	1 cut(s)	58
BtsI	GCAGTG	2 cut(s)	58, 432
BtsIMutI	CAGTG	3 cut(s)	58, 432, 450
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	573, 577
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	131, 308
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	6 cut(s)	100, 514, 538, 545, 580, 603
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	5 cut(s)	15, 135, 141, 381, 453
DpnI	GATC	5 cut(s)	320, 398, 422, 518, 584
DpnII	GATC	5 cut(s)	318, 396, 420, 516, 582
DriI	GACNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	547
Eam1105I	GACNNNNNGTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	288, 519
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	6 cut(s)	103, 517, 541, 548, 583, 606
FaiI	YATR	8 cut(s)	101, 369, 515, 539, 546, 560, 581, 604
FatI	CATG	6 cut(s)	99, 513, 537, 544, 579, 602
Fnu4HI	GCNGC	6 cut(s)	9, 12, 363, 507, 550, 553
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	6 cut(s)	9, 12, 363, 507, 550, 553
GluI	GCNGC	6 cut(s)	9, 12, 363, 507, 550, 553
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	3 cut(s)	133, 309, 549
Hin1II	CATG	6 cut(s)	103, 517, 541, 548, 583, 606
HinfI	GANTC	3 cut(s)	74, 107, 191
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	3 cut(s)	70, 79, 177
Hpy188III	TCNNGA	2 cut(s)	206, 394
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	5 cut(s)	250, 276, 345, 437, 579
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 100, 282
HpyF3I	CTNAG	5 cut(s)	15, 135, 141, 381, 453
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	6 cut(s)	103, 517, 541, 548, 583, 606
Kzo9I	GATC	5 cut(s)	318, 396, 420, 516, 582
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	2 cut(s)	349, 518
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	53, 188
MalI	GATC	5 cut(s)	320, 398, 422, 518, 584
MboI	GATC	5 cut(s)	318, 396, 420, 516, 582
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	2 cut(s)	318, 420
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	5 cut(s)	196, 271, 279, 324, 562
MlyI	GAGTC	3 cut(s)	68, 116, 185
MmeI	TCCRAC	1 cut(s)	192
MseI	TTAA	1 cut(s)	628
MspA1I	CMGCKG	2 cut(s)	8, 45
MspR9I	CCNGG	2 cut(s)	290, 521
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	2 cut(s)	290, 521
MwoI	GCNNNNNNNGC	3 cut(s)	17, 100, 282
NdeII	GATC	5 cut(s)	318, 396, 420, 516, 582
NlaIII	CATG	6 cut(s)	103, 517, 541, 548, 583, 606
NlaIV	GGNNCC	2 cut(s)	320, 430
NmuCI	GTSAC	2 cut(s)	53, 188
PctI	GAATGC	1 cut(s)	437
PkrI	GCNGC	6 cut(s)	10, 13, 364, 508, 551, 554
PleI	GAGTC	3 cut(s)	68, 115, 185
PpsI	GAGTC	3 cut(s)	68, 115, 185
Psp6I	CCWGG	2 cut(s)	288, 519
PspGI	CCWGG	2 cut(s)	288, 519
PspN4I	GGNNCC	2 cut(s)	320, 430
PspPI	GGNCC	2 cut(s)	131, 308
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	2 cut(s)	318, 420
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	628
SatI	GCNGC	6 cut(s)	9, 12, 363, 507, 550, 553
Sau3AI	GATC	5 cut(s)	318, 396, 420, 516, 582
Sau96I	GGNCC	2 cut(s)	131, 308
SchI	GAGTC	3 cut(s)	68, 116, 185
ScrFI	CCNGG	2 cut(s)	290, 521
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	6 cut(s)	10, 60, 147, 246, 291, 416
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	5 cut(s)	196, 271, 279, 324, 562
SsiI	CCGC	5 cut(s)	31, 45, 114, 550, 553
StyD4I	CCNGG	2 cut(s)	288, 519
TaiI	ACGT	1 cut(s)	60
TasI	AATT	5 cut(s)	196, 271, 279, 324, 562
TauI	GCSGC	2 cut(s)	552, 555
Tru1I	TTAA	1 cut(s)	628
Tru9I	TTAA	1 cut(s)	628
TscAI	CASTG	3 cut(s)	58, 439, 457
TseFI	GTSAC	2 cut(s)	53, 188
TseI	GCWGC	4 cut(s)	8, 11, 362, 506
Tsp45I	GTSAC	2 cut(s)	53, 188
TspDTI	ATGAA	1 cut(s)	575
TspRI	CASTG	3 cut(s)	58, 439, 457
XapI	RAATTY	2 cut(s)	279, 562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.